Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38205 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00044 * 359.96152 * 4 3 2 6 6 C 1.38211 * 119.99642 * 359.97438 * 5 4 3 7 7 S 1.76199 * 119.99998 * 180.02562 * 6 5 4 8 8 O 1.42100 * 103.00449 * 203.85539 * 7 6 5 9 9 C 1.81405 * 102.99935 * 89.99988 * 7 6 5 10 10 C 1.52999 * 109.46897 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47379 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47011 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00580 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99524 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00540 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99643 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46910 * 60.00594 * 17 15 13 19 19 H 1.48503 * 109.46834 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47488 * 300.00321 * 17 15 13 21 21 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 22 22 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 24 24 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 25 25 H 1.07999 * 120.00073 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.00462 * 179.97438 * 4 3 2 27 27 H 1.08001 * 119.99957 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.47039 * 299.99990 * 9 7 6 29 29 H 1.08993 * 109.46795 * 60.00160 * 9 7 6 30 30 H 1.08995 * 109.47178 * 299.99795 * 10 9 7 31 31 H 1.09002 * 109.47461 * 60.00613 * 10 9 7 32 32 H 1.09006 * 109.47135 * 300.00263 * 11 10 9 33 33 H 1.09006 * 109.47031 * 59.99880 * 11 10 9 34 34 H 1.08999 * 109.46854 * 300.00315 * 12 11 10 35 35 H 1.08997 * 109.47033 * 59.99725 * 12 11 10 36 36 H 0.96995 * 120.00435 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.99891 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2718 0.0001 0.0019 6 6 3.5807 -1.1968 0.0032 7 16 4.4617 -2.7228 0.0056 8 8 3.5252 -3.6336 -0.5535 9 6 4.6651 -3.0738 1.7737 10 6 5.4257 -4.3898 1.9482 11 6 5.5967 -4.6862 3.4395 12 6 6.3568 -6.0025 3.6140 13 6 6.5246 -6.2946 5.0828 14 1 6.1284 -5.6103 5.8183 15 6 7.1831 -7.4364 5.4877 16 7 7.6651 -8.2701 4.5922 17 14 7.3917 -7.7982 7.3085 18 1 6.0557 -7.9090 7.9474 19 1 8.1283 -9.0766 7.4778 20 1 8.1563 -6.6973 7.9476 21 6 2.1981 -1.1969 0.0057 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.6583 2.1326 -0.0004 26 1 4.1203 2.1327 0.0001 27 1 5.3518 0.0002 0.0027 28 1 5.2261 -2.2654 2.2424 29 1 3.6847 -3.1553 2.2430 30 1 4.8650 -5.1984 1.4794 31 1 6.4062 -4.3077 1.4790 32 1 6.1572 -3.8775 3.9087 33 1 4.6161 -4.7683 3.9083 34 1 5.7959 -6.8108 3.1448 35 1 7.3373 -5.9208 3.1450 36 1 8.1287 -9.0731 4.8770 37 1 1.6581 -2.1322 0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385239581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = -43.823571 kcal Electronic energy + Delta-G solvation = -16841.487487 eV Core-core repulsion = 14095.229163 eV Total energy + Delta-G solvation = -2746.258325 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40174 -35.66217 -35.12893 -33.06352 -32.61318 -31.24403 -29.45179 -27.21264 -25.25765 -23.18961 -22.12177 -21.64158 -20.08126 -17.74488 -16.89090 -16.20391 -15.73875 -15.56874 -15.01294 -14.82452 -14.38800 -14.26836 -13.97455 -13.37169 -13.06277 -12.70796 -12.54884 -12.36300 -12.14559 -11.94668 -11.74464 -11.63234 -11.33062 -10.98859 -10.68581 -10.59472 -10.48096 -10.10340 -9.64947 -9.40571 -9.23833 -9.03000 -8.94572 -8.31781 -8.24643 -5.96903 -3.99310 0.74231 1.13264 1.85307 2.73611 3.34814 3.39059 3.41634 3.44644 3.93167 4.48163 4.55979 4.60997 4.81943 5.03599 5.09935 5.19890 5.27930 5.30780 5.33667 5.38566 5.50902 5.71886 5.82510 5.84476 6.01456 6.09042 6.10583 6.24209 6.27245 6.44382 6.71854 6.75710 6.91576 7.16104 7.71017 7.86711 8.03665 8.46504 9.07826 9.64437 11.14417 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.003102 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.202243 B = 9025.224945 C = 9200.289734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.104 4.104 3 C -0.092 4.092 4 C -0.135 4.135 5 C -0.051 4.051 6 C -0.452 4.452 7 S 1.317 4.683 8 O -0.854 6.854 9 C -0.443 4.443 10 C -0.101 4.101 11 C -0.104 4.104 12 C 0.019 3.981 13 C -0.522 4.522 14 H 0.053 0.947 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.892 3.108 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.277 1.277 21 C -0.055 4.055 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.137 0.863 28 H 0.113 0.887 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.045 0.955 34 H 0.015 0.985 35 H 0.018 0.982 36 H 0.261 0.739 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.131 20.905 -11.782 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.106 4.106 3 C -0.110 4.110 4 C -0.154 4.154 5 C -0.071 4.071 6 C -0.548 4.548 7 S 1.516 4.484 8 O -0.850 6.850 9 C -0.580 4.580 10 C -0.140 4.140 11 C -0.143 4.143 12 C -0.019 4.019 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.720 3.280 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.074 4.074 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.155 0.845 28 H 0.131 0.869 29 H 0.102 0.898 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.033 0.967 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.768 20.207 -12.602 24.758 hybrid contribution -1.954 -0.210 2.209 2.957 sum -8.722 19.997 -10.393 24.166 Atomic orbital electron populations 1.20808 0.91072 1.02890 1.02437 1.20051 0.96308 0.93339 1.00853 1.21195 0.94593 0.97381 0.97810 1.21263 0.94338 0.98368 1.01417 1.20880 0.99930 0.90918 0.95327 1.27940 1.02316 1.14602 1.09909 1.69501 1.09123 0.81361 0.88382 1.93094 1.63651 1.58978 1.69285 1.27776 1.06180 1.05411 1.18668 1.21312 0.99091 0.93080 1.00499 1.21625 1.00284 1.00435 0.91983 1.19127 0.95143 0.90928 0.96654 1.21241 1.35836 1.06491 0.92425 0.92828 1.25030 0.95706 0.96265 0.97481 1.69950 1.38028 1.12371 1.33177 0.86668 0.78218 0.77510 0.85652 1.20319 1.21271 1.20230 1.21068 0.93562 0.98053 0.94741 0.91099 0.91451 0.91463 0.85955 0.85480 0.84535 0.86877 0.89832 0.92075 0.91166 0.93143 0.93661 0.96664 0.96405 0.92952 0.85609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.10 -1.13 5.88 -104.62 -0.62 -1.74 16 3 C -0.09 -0.83 9.70 -39.59 -0.38 -1.22 16 4 C -0.13 -1.13 10.05 -39.58 -0.40 -1.52 16 5 C -0.05 -0.45 9.75 -39.58 -0.39 -0.83 16 6 C -0.45 -5.14 5.61 -39.58 -0.22 -5.36 16 7 S 1.32 15.22 13.55 -107.50 -1.46 13.77 16 8 O -0.85 -15.18 16.90 -35.23 -0.60 -15.77 16 9 C -0.44 -5.93 5.88 37.16 0.22 -5.71 16 10 C -0.10 -1.70 5.22 -26.73 -0.14 -1.84 16 11 C -0.10 -2.18 5.15 -26.73 -0.14 -2.32 16 12 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 13 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 14 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 17 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.06 -0.71 9.10 -39.58 -0.36 -1.07 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 23 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 24 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 25 H 0.12 0.82 8.06 -52.49 -0.42 0.39 16 26 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 27 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 28 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.01 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.13 1.80 7.46 -52.48 -0.39 1.41 16 LS Contribution 327.63 15.07 4.94 4.94 Total: -1.00 -36.73 327.63 -9.86 -46.58 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.85 Total: -4.10 kcal Atomic # 6 Polarization: -33.12 SS G_CDS: -2.61 Total: -35.74 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: -0.60 Total: -15.77 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 15.22 SS G_CDS: -1.46 Total: 13.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.73 -9.86 -46.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385239581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.760 kcal (2) G-P(sol) polarization free energy of solvation -36.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds