Wall clock time and date at job start Mon Mar 30 2020 06:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38256 * 119.99730 * 2 1 4 4 C 1.38205 * 120.00143 * 179.97438 * 3 2 1 5 5 C 1.38265 * 120.00044 * 359.96152 * 4 3 2 6 6 C 1.38211 * 119.99642 * 359.97438 * 5 4 3 7 7 S 1.76199 * 119.99998 * 180.02562 * 6 5 4 8 8 O 1.42100 * 103.00449 * 203.85539 * 7 6 5 9 9 C 1.81405 * 102.99935 * 89.99988 * 7 6 5 10 10 C 1.52999 * 109.46897 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47006 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47379 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47011 * 180.02562 * 12 11 10 14 14 H 1.07993 * 120.00580 * 0.02562 * 13 12 11 15 15 C 1.37881 * 119.99524 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00540 * 0.02562 * 15 13 12 17 17 Si 1.86805 * 119.99643 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46910 * 60.00594 * 17 15 13 19 19 H 1.48503 * 109.46834 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47488 * 300.00321 * 17 15 13 21 21 C 1.38211 * 120.00152 * 179.72671 * 2 1 3 22 22 H 1.08999 * 109.47015 * 90.00126 * 1 2 3 23 23 H 1.09000 * 109.46646 * 209.99278 * 1 2 3 24 24 H 1.09000 * 109.47248 * 329.99996 * 1 2 3 25 25 H 1.07999 * 120.00073 * 359.97438 * 3 2 1 26 26 H 1.07996 * 120.00462 * 179.97438 * 4 3 2 27 27 H 1.08001 * 119.99957 * 180.02562 * 5 4 3 28 28 H 1.08995 * 109.47039 * 299.99990 * 9 7 6 29 29 H 1.08993 * 109.46795 * 60.00160 * 9 7 6 30 30 H 1.08995 * 109.47178 * 299.99795 * 10 9 7 31 31 H 1.09002 * 109.47461 * 60.00613 * 10 9 7 32 32 H 1.09006 * 109.47135 * 300.00263 * 11 10 9 33 33 H 1.09006 * 109.47031 * 59.99880 * 11 10 9 34 34 H 1.08999 * 109.46854 * 300.00315 * 12 11 10 35 35 H 1.08997 * 109.47033 * 59.99725 * 12 11 10 36 36 H 0.96995 * 120.00435 * 179.97438 * 16 15 13 37 37 H 1.08004 * 119.99891 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2718 0.0001 0.0019 6 6 3.5807 -1.1968 0.0032 7 16 4.4617 -2.7228 0.0056 8 8 3.5252 -3.6336 -0.5535 9 6 4.6651 -3.0738 1.7737 10 6 5.4257 -4.3898 1.9482 11 6 5.5967 -4.6862 3.4395 12 6 6.3568 -6.0025 3.6140 13 6 6.5246 -6.2946 5.0828 14 1 6.1284 -5.6103 5.8183 15 6 7.1831 -7.4364 5.4877 16 7 7.6651 -8.2701 4.5922 17 14 7.3917 -7.7982 7.3085 18 1 6.0557 -7.9090 7.9474 19 1 8.1283 -9.0766 7.4778 20 1 8.1563 -6.6973 7.9476 21 6 2.1981 -1.1969 0.0057 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3632 -0.8901 0.5137 24 1 -0.3634 0.8900 0.5138 25 1 1.6583 2.1326 -0.0004 26 1 4.1203 2.1327 0.0001 27 1 5.3518 0.0002 0.0027 28 1 5.2261 -2.2654 2.2424 29 1 3.6847 -3.1553 2.2430 30 1 4.8650 -5.1984 1.4794 31 1 6.4062 -4.3077 1.4790 32 1 6.1572 -3.8775 3.9087 33 1 4.6161 -4.7683 3.9083 34 1 5.7959 -6.8108 3.1448 35 1 7.3373 -5.9208 3.1450 36 1 8.1287 -9.0731 4.8770 37 1 1.6581 -2.1322 0.0098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385239581.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:06 Heat of formation + Delta-G solvation = -67.142180 kcal Electronic energy + Delta-G solvation = -16842.498658 eV Core-core repulsion = 14095.229163 eV Total energy + Delta-G solvation = -2747.269496 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.13109 -36.93031 -36.79646 -34.64239 -33.76341 -32.00256 -31.25212 -27.90777 -27.13280 -24.17432 -23.50750 -22.57370 -21.76009 -18.66980 -18.40744 -17.73213 -16.68976 -16.58788 -16.40392 -16.24661 -15.82368 -15.06926 -14.72389 -14.56954 -14.53462 -14.02852 -13.82593 -13.43439 -13.42565 -13.13623 -13.04575 -12.84697 -12.65939 -12.42174 -12.29640 -12.14931 -12.02303 -11.51994 -11.41719 -11.30371 -10.82497 -10.55151 -10.16129 -9.69139 -9.32782 -8.19981 -6.31749 -0.06671 0.38924 0.92823 1.39005 1.42474 1.50501 1.80454 2.40729 2.66657 2.95065 3.12445 3.83317 3.94851 3.96832 4.04741 4.15201 4.37674 4.41124 4.45118 4.55183 4.64995 4.66613 4.85348 4.87479 4.95298 4.96493 5.12351 5.18804 5.25442 5.31219 5.32965 5.42367 5.52958 5.54316 5.76667 5.86400 6.02645 6.25505 6.85479 7.37422 8.91632 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.003102 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.202243 B = 9025.224945 C = 9200.289734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.120 4.120 3 C -0.092 4.092 4 C -0.133 4.133 5 C -0.046 4.046 6 C -0.469 4.469 7 S 1.387 4.613 8 O -0.923 6.923 9 C -0.443 4.443 10 C -0.100 4.100 11 C -0.095 4.095 12 C 0.019 3.981 13 C -0.548 4.548 14 H 0.059 0.941 15 C -0.002 4.002 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.262 1.262 21 C -0.092 4.092 22 H 0.076 0.924 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.150 0.850 26 H 0.164 0.836 27 H 0.181 0.819 28 H 0.148 0.852 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.097 0.903 32 H 0.067 0.933 33 H 0.033 0.967 34 H -0.019 1.019 35 H 0.004 0.996 36 H 0.264 0.736 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 24.198 -11.048 27.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.121 4.121 3 C -0.110 4.110 4 C -0.151 4.151 5 C -0.065 4.065 6 C -0.566 4.566 7 S 1.587 4.413 8 O -0.919 6.919 9 C -0.580 4.580 10 C -0.139 4.139 11 C -0.134 4.134 12 C -0.018 4.018 13 C -0.586 4.586 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.790 3.210 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.187 1.187 21 C -0.111 4.111 22 H 0.095 0.905 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.168 0.832 26 H 0.182 0.818 27 H 0.198 0.802 28 H 0.167 0.833 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.115 0.885 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.000 1.000 35 H 0.022 0.978 36 H 0.073 0.927 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.749 23.487 -11.863 26.933 hybrid contribution -2.295 -1.124 1.937 3.206 sum -8.043 22.363 -9.926 25.755 Atomic orbital electron populations 1.20846 0.90133 1.03297 1.02964 1.20311 0.97371 0.93372 1.01093 1.21614 0.95483 0.97565 0.96360 1.21779 0.94205 0.99682 0.99465 1.21437 1.02147 0.89752 0.93196 1.27747 1.01797 1.15089 1.11996 1.68626 1.07230 0.79897 0.85526 1.92967 1.65840 1.62048 1.70999 1.27771 1.04999 1.04579 1.20631 1.21214 1.00809 0.94274 0.97563 1.21463 0.98907 0.97973 0.95048 1.19073 0.94606 0.92816 0.95325 1.21714 1.36046 1.07053 0.93754 0.92291 1.26016 0.95161 0.95972 1.02815 1.70088 1.38690 1.12900 1.35697 0.85495 0.78512 0.77760 0.79242 1.19612 1.20696 1.18671 1.21044 0.94644 0.97799 0.97655 0.90505 0.92652 0.89425 0.83220 0.81808 0.80196 0.83348 0.91905 0.94638 0.88491 0.91383 0.94795 1.00026 0.97801 0.92706 0.88887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.12 -2.50 5.88 -19.86 -0.12 -2.62 16 3 C -0.09 -1.39 9.70 22.27 0.22 -1.18 16 4 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 5 C -0.05 -0.63 9.75 22.27 0.22 -0.42 16 6 C -0.47 -10.14 5.61 22.27 0.12 -10.01 16 7 S 1.39 31.53 13.55 -56.49 -0.77 30.77 16 8 O -0.92 -34.47 16.90 -148.98 -2.52 -36.99 16 9 C -0.44 -11.52 5.88 71.98 0.42 -11.09 16 10 C -0.10 -3.38 5.22 30.60 0.16 -3.22 16 11 C -0.10 -4.00 5.15 30.60 0.16 -3.84 16 12 C 0.02 1.03 4.97 29.85 0.15 1.18 16 13 C -0.55 -32.09 9.11 25.60 0.23 -31.86 16 14 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.12 5.46 84.66 0.46 0.35 16 16 N -0.93 -58.01 13.29 21.45 0.28 -57.72 16 17 Si 0.97 44.96 29.54 68.60 2.03 46.99 16 18 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 21 C -0.09 -2.44 9.10 22.27 0.20 -2.23 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 24 H 0.09 1.06 8.09 -2.39 -0.02 1.04 16 25 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 26 H 0.16 0.84 8.06 -2.91 -0.02 0.82 16 27 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 28 H 0.15 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 34 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 37 H 0.09 2.97 7.46 -2.91 -0.02 2.94 16 Total: -1.00 -83.44 327.63 3.22 -80.22 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 1.02 Total: 4.30 kcal Atomic # 6 Polarization: -70.74 SS G_CDS: 3.17 Total: -67.58 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: 0.28 Total: -57.72 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -2.52 Total: -36.99 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 16 Polarization: 31.53 SS G_CDS: -0.77 Total: 30.77 kcal Total: -83.44 3.22 -80.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385239581.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.080 kcal (2) G-P(sol) polarization free energy of solvation -83.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds