Wall clock time and date at job start Mon Mar 30 2020 06:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1 9 9 O 1.42094 * 102.99865 * 161.31778 * 8 7 2 10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2 11 11 C 1.53005 * 109.46803 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47057 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47028 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47119 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99691 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99626 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00033 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47236 * 90.00254 * 18 16 14 20 20 H 1.48504 * 109.46969 * 210.00465 * 18 16 14 21 21 H 1.48504 * 109.47286 * 330.00248 * 18 16 14 22 22 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 23 23 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 24 24 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 25 25 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 27 27 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.47163 * 299.99854 * 10 8 7 30 30 H 1.08996 * 109.47020 * 60.00633 * 10 8 7 31 31 H 1.08997 * 109.47370 * 300.00553 * 11 10 8 32 32 H 1.08999 * 109.46816 * 60.00079 * 11 10 8 33 33 H 1.09002 * 109.47323 * 299.99948 * 12 11 10 34 34 H 1.08999 * 109.47334 * 60.00285 * 12 11 10 35 35 H 1.09002 * 109.46587 * 299.99861 * 13 12 11 36 36 H 1.08999 * 109.47270 * 59.99707 * 13 12 11 37 37 H 0.97005 * 119.99995 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 16 1.3172 -2.7229 -0.0121 9 8 2.2938 -3.6535 -0.4587 10 6 0.9736 -3.0043 1.7468 11 6 0.1994 -4.3136 1.9120 12 6 -0.0910 -4.5506 3.3953 13 6 -0.8646 -5.8602 3.5606 14 6 -1.1512 -6.0934 5.0217 15 1 -0.8147 -5.3792 5.7586 16 6 -1.8420 -7.2191 5.4176 17 7 -2.0916 -7.4228 6.6926 18 14 -2.4232 -8.4547 4.1430 19 1 -1.3696 -9.4793 3.9303 20 1 -3.6648 -9.1135 4.6224 21 1 -2.6974 -7.7536 2.8629 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1328 0.0101 27 1 5.3517 0.0002 0.0099 28 1 4.1207 -2.1321 -0.0002 29 1 1.9135 -3.0658 2.2952 30 1 0.3783 -2.1789 2.1372 31 1 -0.7405 -4.2517 1.3635 32 1 0.7943 -5.1392 1.5214 33 1 0.8487 -4.6124 3.9442 34 1 -0.6860 -3.7250 3.7856 35 1 -1.8043 -5.7988 3.0117 36 1 -0.2693 -6.6857 3.1705 37 1 -2.5779 -8.2146 6.9712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385281284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:09 Heat of formation + Delta-G solvation = -38.942185 kcal Electronic energy + Delta-G solvation = -17139.385895 eV Core-core repulsion = 14393.339243 eV Total energy + Delta-G solvation = -2746.046652 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.43448 -35.77559 -35.29990 -33.12474 -32.56825 -31.27111 -29.93154 -27.19138 -25.50826 -23.20647 -21.97189 -21.52451 -20.10336 -18.03292 -16.82269 -16.60576 -15.87016 -15.52413 -15.09097 -14.94866 -14.38192 -14.15505 -13.90976 -13.39146 -13.28719 -12.72067 -12.56375 -12.42128 -12.33430 -12.11831 -11.90209 -11.76139 -11.37343 -11.12970 -10.87957 -10.61715 -10.33867 -9.88134 -9.69553 -9.53495 -9.37069 -9.14854 -8.98649 -8.51321 -8.28964 -6.01981 -3.99789 0.69488 1.10948 1.80376 2.67588 3.33435 3.40351 3.42026 3.44114 3.85046 4.47815 4.49014 4.62228 4.74088 4.95210 5.10529 5.14364 5.16981 5.32032 5.32531 5.34656 5.51434 5.64124 5.69919 5.85839 5.91556 6.06105 6.11679 6.16372 6.19177 6.28969 6.58918 6.69411 6.70814 6.93646 7.34156 7.46920 7.82622 8.56929 9.03078 9.60815 11.11624 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.003483 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.735097 B = 8036.293929 C = 8186.654750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.010 4.010 3 C -0.141 4.141 4 C -0.085 4.085 5 C -0.144 4.144 6 C -0.050 4.050 7 C -0.459 4.459 8 S 1.315 4.685 9 O -0.857 6.857 10 C -0.446 4.446 11 C -0.104 4.104 12 C -0.096 4.096 13 C -0.017 4.017 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.264 1.264 22 H 0.087 0.913 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.010 0.990 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.505 19.170 -17.320 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.011 4.011 3 C -0.159 4.159 4 C -0.103 4.103 5 C -0.163 4.163 6 C -0.069 4.069 7 C -0.555 4.555 8 S 1.514 4.486 9 O -0.853 6.853 10 C -0.583 4.583 11 C -0.142 4.142 12 C -0.135 4.135 13 C -0.054 4.054 14 C -0.558 4.558 15 H 0.089 0.911 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.097 0.903 25 H 0.145 0.855 26 H 0.142 0.858 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.104 0.896 30 H 0.132 0.868 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.029 0.971 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.208 18.480 -17.992 26.313 hybrid contribution 1.847 -0.582 0.880 2.127 sum 7.055 17.898 -17.112 25.748 Atomic orbital electron populations 1.21099 0.90334 1.04103 1.03779 1.19611 0.95994 0.91648 0.93882 1.21160 0.94352 0.97771 1.02661 1.21310 0.94584 0.98006 0.96439 1.21239 1.00061 0.92677 1.02336 1.21157 0.93546 0.98720 0.93467 1.27695 1.02349 1.13802 1.11683 1.69561 1.07551 0.80972 0.90501 1.93077 1.61465 1.57524 1.73199 1.27779 1.06538 1.05153 1.18800 1.21343 0.98945 0.93494 1.00455 1.21449 1.00271 0.99686 0.92132 1.19616 0.95167 0.92903 0.97764 1.21174 1.35622 1.07728 0.91311 0.91145 1.25054 0.95579 0.97863 0.95152 1.69922 1.41484 1.28141 1.14926 0.86759 0.78352 0.81643 0.82437 1.20354 1.21408 1.18870 0.89442 0.90407 0.90301 0.85505 0.85847 0.85953 0.85420 0.89560 0.86754 0.91181 0.92046 0.93025 0.92490 0.96433 0.97120 0.92784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 9.55 36.00 0.34 -0.41 16 2 C -0.01 -0.09 5.88 -104.63 -0.62 -0.71 16 3 C -0.14 -1.19 9.70 -39.58 -0.38 -1.57 16 4 C -0.09 -0.75 10.05 -39.58 -0.40 -1.15 16 5 C -0.14 -1.50 10.05 -39.58 -0.40 -1.90 16 6 C -0.05 -0.63 9.45 -39.58 -0.37 -1.00 16 7 C -0.46 -5.23 5.63 -39.59 -0.22 -5.45 16 8 S 1.31 15.01 11.81 -107.50 -1.27 13.74 16 9 O -0.86 -14.94 16.78 -35.23 -0.59 -15.53 16 10 C -0.45 -5.74 5.77 37.16 0.21 -5.52 16 11 C -0.10 -1.63 5.22 -26.73 -0.14 -1.76 16 12 C -0.10 -1.91 5.15 -26.73 -0.14 -2.05 16 13 C -0.02 -0.41 4.04 -27.88 -0.11 -0.52 16 14 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.35 13.96 55.43 0.77 -27.58 16 18 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.26 -6.26 6.54 56.52 0.37 -5.89 16 22 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.08 0.37 6.00 -51.93 -0.31 0.05 16 24 H 0.08 0.35 8.09 -51.93 -0.42 -0.07 16 25 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 26 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 28 H 0.13 1.78 7.34 -52.49 -0.39 1.39 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 30 H 0.11 1.19 7.48 -51.93 -0.39 0.80 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 36 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -37.12 319.40 -9.26 -46.37 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -5.66 Total: -3.45 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: -2.65 Total: -35.71 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.77 Total: -27.58 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.59 Total: -15.53 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Atomic # 16 Polarization: 15.01 SS G_CDS: -1.27 Total: 13.74 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -37.12 -9.26 -46.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385281284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.432 kcal (2) G-P(sol) polarization free energy of solvation -37.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds