Wall clock time and date at job start Mon Mar 30 2020 06:40:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1 9 9 O 1.42094 * 102.99865 * 161.31778 * 8 7 2 10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2 11 11 C 1.53005 * 109.46803 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.47057 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47028 * 180.02562 * 12 11 10 14 14 C 1.50703 * 109.47119 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99691 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99890 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99626 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00033 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47236 * 90.00254 * 18 16 14 20 20 H 1.48504 * 109.46969 * 210.00465 * 18 16 14 21 21 H 1.48504 * 109.47286 * 330.00248 * 18 16 14 22 22 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 23 23 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 24 24 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 25 25 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 27 27 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.47163 * 299.99854 * 10 8 7 30 30 H 1.08996 * 109.47020 * 60.00633 * 10 8 7 31 31 H 1.08997 * 109.47370 * 300.00553 * 11 10 8 32 32 H 1.08999 * 109.46816 * 60.00079 * 11 10 8 33 33 H 1.09002 * 109.47323 * 299.99948 * 12 11 10 34 34 H 1.08999 * 109.47334 * 60.00285 * 12 11 10 35 35 H 1.09002 * 109.46587 * 299.99861 * 13 12 11 36 36 H 1.08999 * 109.47270 * 59.99707 * 13 12 11 37 37 H 0.97005 * 119.99995 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 16 1.3172 -2.7229 -0.0121 9 8 2.2938 -3.6535 -0.4587 10 6 0.9736 -3.0043 1.7468 11 6 0.1994 -4.3136 1.9120 12 6 -0.0910 -4.5506 3.3953 13 6 -0.8646 -5.8602 3.5606 14 6 -1.1512 -6.0934 5.0217 15 1 -0.8147 -5.3792 5.7586 16 6 -1.8420 -7.2191 5.4176 17 7 -2.0916 -7.4228 6.6926 18 14 -2.4232 -8.4547 4.1430 19 1 -1.3696 -9.4793 3.9303 20 1 -3.6648 -9.1135 4.6224 21 1 -2.6974 -7.7536 2.8629 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1328 0.0101 27 1 5.3517 0.0002 0.0099 28 1 4.1207 -2.1321 -0.0002 29 1 1.9135 -3.0658 2.2952 30 1 0.3783 -2.1789 2.1372 31 1 -0.7405 -4.2517 1.3635 32 1 0.7943 -5.1392 1.5214 33 1 0.8487 -4.6124 3.9442 34 1 -0.6860 -3.7250 3.7856 35 1 -1.8043 -5.7988 3.0117 36 1 -0.2693 -6.6857 3.1705 37 1 -2.5779 -8.2146 6.9712 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385281284.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:08 Heat of formation + Delta-G solvation = -63.406854 kcal Electronic energy + Delta-G solvation = -17140.446762 eV Core-core repulsion = 14393.339243 eV Total energy + Delta-G solvation = -2747.107520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.14782 -36.97855 -36.86113 -34.63837 -33.74991 -32.03441 -31.67472 -27.74110 -27.26681 -24.09873 -23.27390 -22.45656 -21.76470 -18.95814 -18.80613 -17.66387 -16.77749 -16.43967 -16.31938 -16.19570 -15.87181 -15.15537 -14.79077 -14.68681 -14.48736 -14.06088 -13.85789 -13.62517 -13.48135 -12.99716 -12.94229 -12.86451 -12.60567 -12.35661 -12.12566 -12.05339 -11.78945 -11.73101 -11.39310 -11.31803 -10.91918 -10.76225 -10.23359 -9.69859 -9.31300 -8.29380 -6.33778 -0.10665 0.36876 0.91096 1.37658 1.38749 1.51676 1.76949 2.37408 2.64141 2.90574 3.06177 3.85428 3.92403 3.95622 4.02239 4.08380 4.35690 4.38688 4.46609 4.53246 4.72162 4.79300 4.87426 4.90697 4.99766 5.02115 5.07323 5.12679 5.22338 5.30357 5.45258 5.45453 5.51999 5.55674 5.63397 5.68352 6.00765 6.29103 6.74564 7.31080 8.87665 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.035947 B = 0.003483 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.735097 B = 8036.293929 C = 8186.654750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.005 4.005 3 C -0.143 4.143 4 C -0.084 4.084 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.481 4.481 8 S 1.383 4.617 9 O -0.922 6.922 10 C -0.449 4.449 11 C -0.101 4.101 12 C -0.093 4.093 13 C -0.017 4.017 14 C -0.536 4.536 15 H 0.028 0.972 16 C 0.000 4.000 17 N -0.954 5.954 18 Si 0.953 3.047 19 H -0.274 1.274 20 H -0.281 1.281 21 H -0.237 1.237 22 H 0.112 0.888 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.161 0.839 26 H 0.153 0.847 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.146 0.854 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.010 0.990 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.860 21.170 -19.660 29.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.007 4.007 3 C -0.162 4.162 4 C -0.101 4.101 5 C -0.178 4.178 6 C -0.103 4.103 7 C -0.578 4.578 8 S 1.584 4.416 9 O -0.918 6.918 10 C -0.585 4.585 11 C -0.140 4.140 12 C -0.132 4.132 13 C -0.055 4.055 14 C -0.574 4.574 15 H 0.046 0.954 16 C -0.196 4.196 17 N -0.595 5.595 18 Si 0.776 3.224 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.160 1.160 22 H 0.130 0.870 23 H 0.105 0.895 24 H 0.116 0.884 25 H 0.179 0.821 26 H 0.170 0.830 27 H 0.150 0.850 28 H 0.116 0.884 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.125 0.875 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.028 0.972 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.567 20.479 -20.337 29.080 hybrid contribution 2.417 -1.018 1.701 3.126 sum 5.984 19.460 -18.636 27.601 Atomic orbital electron populations 1.21331 0.87528 1.05526 1.05798 1.20070 0.98015 0.90742 0.91828 1.21655 0.94386 0.98943 1.01175 1.21723 0.95300 0.98319 0.94799 1.21439 1.00875 0.92718 1.02773 1.21142 0.94566 0.98550 0.96061 1.27552 1.01946 1.14397 1.13923 1.68708 1.05675 0.79356 0.87879 1.92953 1.63724 1.60475 1.74660 1.27806 1.05569 1.04962 1.20161 1.21267 1.00888 0.94370 0.97446 1.21349 0.98723 0.97901 0.95198 1.19612 0.96438 0.95055 0.94367 1.21566 1.35373 1.07049 0.93388 0.95365 1.26100 0.95727 1.00278 0.97536 1.70082 1.42734 1.29231 1.17468 0.85617 0.77891 0.78645 0.80279 1.19906 1.20700 1.15961 0.87007 0.89532 0.88397 0.82127 0.82952 0.84963 0.88367 0.91971 0.83628 0.87540 0.93688 0.95179 0.91711 0.94724 0.97195 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.55 71.24 0.68 -0.29 16 2 C -0.01 -0.08 5.88 -19.87 -0.12 -0.19 16 3 C -0.14 -1.89 9.70 22.27 0.22 -1.67 16 4 C -0.08 -1.26 10.05 22.27 0.22 -1.04 16 5 C -0.16 -3.25 10.05 22.27 0.22 -3.03 16 6 C -0.08 -2.19 9.45 22.27 0.21 -1.98 16 7 C -0.48 -10.51 5.63 22.27 0.13 -10.39 16 8 S 1.38 30.31 11.81 -56.49 -0.67 29.65 16 9 O -0.92 -33.05 16.78 -148.98 -2.50 -35.55 16 10 C -0.45 -11.03 5.77 71.98 0.42 -10.61 16 11 C -0.10 -3.02 5.22 30.59 0.16 -2.86 16 12 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 13 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 14 C -0.54 -31.79 9.66 25.60 0.25 -31.54 16 15 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 16 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 17 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 18 Si 0.95 44.82 27.47 68.60 1.88 46.70 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.24 -10.01 6.54 99.48 0.65 -9.36 16 22 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 23 H 0.09 0.44 6.00 -2.39 -0.01 0.42 16 24 H 0.10 0.35 8.09 -2.39 -0.02 0.33 16 25 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 26 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 27 H 0.13 2.26 8.06 -2.91 -0.02 2.23 16 28 H 0.10 3.03 7.34 -2.91 -0.02 3.01 16 29 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.15 2.61 7.48 -2.39 -0.02 2.59 16 31 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.03 1.53 7.20 -2.39 -0.02 1.51 16 36 H 0.01 0.46 7.57 -2.39 -0.02 0.44 16 37 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 Total: -1.00 -84.62 319.40 3.12 -81.50 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 0.98 Total: 5.91 kcal Atomic # 6 Polarization: -70.47 SS G_CDS: 3.13 Total: -67.34 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: 0.30 Total: -60.87 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -2.50 Total: -35.55 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Atomic # 16 Polarization: 30.31 SS G_CDS: -0.67 Total: 29.65 kcal Total: -84.62 3.12 -81.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385281284.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.095 kcal (2) G-P(sol) polarization free energy of solvation -84.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds