Wall clock time and date at job start Mon Mar 30 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.00261 * 2 1 4 4 C 1.38215 * 120.00327 * 179.97438 * 3 2 1 5 5 C 1.38249 * 119.99951 * 0.02721 * 4 3 2 6 6 C 1.38221 * 120.00017 * 359.76693 * 5 4 3 7 7 C 1.38210 * 119.99814 * 180.02562 * 2 1 3 8 8 S 1.76199 * 120.00065 * 359.97438 * 7 2 1 9 9 O 1.42095 * 102.99665 * 34.06539 * 8 7 2 10 10 C 1.81395 * 103.00066 * 280.20809 * 8 7 2 11 11 C 1.53001 * 109.46968 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47238 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47238 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46988 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99851 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99800 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00407 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00143 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47101 * 90.00116 * 18 16 14 20 20 H 1.48504 * 109.47331 * 209.99936 * 18 16 14 21 21 H 1.48506 * 109.47301 * 330.00249 * 18 16 14 22 22 H 1.09002 * 109.47192 * 262.03705 * 1 2 3 23 23 H 1.08998 * 109.46816 * 22.03508 * 1 2 3 24 24 H 1.09001 * 109.47299 * 142.03145 * 1 2 3 25 25 H 1.08006 * 120.00114 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.00125 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.00542 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.00358 * 180.25148 * 6 5 4 29 29 H 1.08998 * 109.46895 * 60.00598 * 10 8 7 30 30 H 1.08991 * 109.47499 * 299.99758 * 10 8 7 31 31 H 1.09002 * 109.47342 * 300.00367 * 11 10 8 32 32 H 1.09001 * 109.47378 * 60.00176 * 11 10 8 33 33 H 1.09002 * 109.47143 * 300.00353 * 12 11 10 34 34 H 1.09008 * 109.47323 * 60.00258 * 12 11 10 35 35 H 1.09006 * 109.47210 * 299.99748 * 13 12 11 36 36 H 1.09001 * 109.47378 * 60.00040 * 13 12 11 37 37 H 0.96998 * 120.00766 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0048 7 6 2.1980 -1.1970 -0.0005 8 16 1.3170 -2.7229 -0.0005 9 8 0.1636 -2.4259 -0.7756 10 6 0.8424 -2.9200 1.7391 11 6 0.0553 -4.2211 1.9086 12 6 -0.3457 -4.3871 3.3758 13 6 -1.1333 -5.6878 3.5452 14 6 -1.5287 -5.8510 4.9903 15 1 -1.2461 -5.1021 5.7153 16 6 -2.2504 -6.9568 5.3869 17 7 -2.5951 -7.0996 6.6480 18 14 -2.7386 -8.2524 4.1329 19 1 -1.6749 -9.2854 4.0486 20 1 -4.0143 -8.8885 4.5492 21 1 -2.9145 -7.6136 2.8038 22 1 -0.3634 -0.1424 1.0178 23 1 -0.3633 0.9526 -0.3856 24 1 -0.3634 -0.8102 -0.6322 25 1 1.6584 2.1327 0.0004 26 1 4.1205 2.1326 0.0001 27 1 5.3517 -0.0001 0.0005 28 1 4.1206 -2.1323 0.0089 29 1 0.2213 -2.0778 2.0439 30 1 1.7384 -2.9538 2.3586 31 1 -0.8409 -4.1870 1.2891 32 1 0.6759 -5.0636 1.6036 33 1 0.5503 -4.4210 3.9957 34 1 -0.9666 -3.5445 3.6804 35 1 -2.0293 -5.6534 2.9254 36 1 -0.5129 -6.5306 3.2405 37 1 -3.1024 -7.8778 6.9271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385281286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:12 Heat of formation + Delta-G solvation = -27.661973 kcal Electronic energy + Delta-G solvation = -17225.010059 eV Core-core repulsion = 14479.452553 eV Total energy + Delta-G solvation = -2745.557505 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.41149 -35.99137 -35.29105 -32.87241 -32.56624 -31.29156 -29.93194 -27.01334 -25.50842 -23.22948 -21.88725 -21.53811 -20.10351 -18.11732 -16.76669 -16.57693 -15.95453 -15.68099 -15.09368 -14.93877 -14.31203 -14.16676 -13.91167 -13.34469 -13.26199 -12.73716 -12.49452 -12.38636 -12.27551 -12.00661 -11.71721 -11.54093 -11.33144 -11.13715 -10.87387 -10.60757 -10.21607 -9.89260 -9.69133 -9.53137 -9.27217 -9.14572 -8.87332 -8.51615 -8.30715 -6.02184 -4.00097 0.73382 1.14475 1.76589 2.65969 3.32438 3.38709 3.40057 3.44601 3.88163 4.47545 4.59731 4.68880 4.72447 5.08016 5.10605 5.16064 5.22857 5.32165 5.40898 5.54221 5.66542 5.71609 5.72946 5.89479 6.03297 6.11226 6.17205 6.23610 6.28896 6.48791 6.58570 6.70514 6.74574 6.93181 7.33712 7.46799 7.82400 8.56639 9.02850 9.60568 11.11420 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037256 B = 0.003488 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.368970 B = 8026.054170 C = 8146.401647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.009 4.009 3 C -0.145 4.145 4 C -0.084 4.084 5 C -0.149 4.149 6 C -0.039 4.039 7 C -0.464 4.464 8 S 1.315 4.685 9 O -0.847 6.847 10 C -0.442 4.442 11 C -0.103 4.103 12 C -0.097 4.097 13 C -0.017 4.017 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.880 3.120 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.138 0.862 25 H 0.121 0.879 26 H 0.122 0.878 27 H 0.126 0.874 28 H 0.136 0.864 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.607 12.677 -16.034 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.010 4.010 3 C -0.164 4.164 4 C -0.102 4.102 5 C -0.168 4.168 6 C -0.058 4.058 7 C -0.560 4.560 8 S 1.516 4.484 9 O -0.842 6.842 10 C -0.580 4.580 11 C -0.142 4.142 12 C -0.135 4.135 13 C -0.054 4.054 14 C -0.558 4.558 15 H 0.088 0.912 16 C -0.136 4.136 17 N -0.545 5.545 18 Si 0.708 3.292 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.189 1.189 22 H 0.087 0.913 23 H 0.082 0.918 24 H 0.155 0.845 25 H 0.139 0.861 26 H 0.140 0.860 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.033 0.967 36 H 0.031 0.969 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.319 11.982 -16.706 25.639 hybrid contribution -1.376 1.424 0.481 2.038 sum 13.944 13.406 -16.225 25.247 Atomic orbital electron populations 1.21910 0.90987 1.06544 1.04450 1.19989 0.96202 0.92463 0.92307 1.21241 0.94546 0.97813 1.02769 1.21300 0.94283 0.98306 0.96356 1.21229 1.00025 0.92713 1.02787 1.20857 0.92071 0.98625 0.94295 1.27565 1.02865 1.13304 1.12222 1.69335 0.97714 0.96024 0.85340 1.92849 1.50791 1.79859 1.60722 1.27733 1.07642 1.04355 1.18266 1.21339 0.98909 0.93541 1.00402 1.21448 0.99978 0.99747 0.92371 1.19613 0.95149 0.92948 0.97716 1.21174 1.34400 1.07597 0.92677 0.91157 1.25053 0.95450 0.98023 0.95115 1.69918 1.39428 1.29498 1.15640 0.86764 0.78075 0.81932 0.82450 1.20220 1.21448 1.18941 0.91272 0.91788 0.84467 0.86116 0.85979 0.85591 0.84587 0.89548 0.86739 0.92013 0.91203 0.92552 0.93023 0.96686 0.96884 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 9.30 36.01 0.33 -2.09 16 2 C -0.01 -0.11 5.86 -104.63 -0.61 -0.72 16 3 C -0.14 -1.57 9.67 -39.58 -0.38 -1.95 16 4 C -0.08 -0.76 10.05 -39.59 -0.40 -1.16 16 5 C -0.15 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.04 -0.33 9.75 -39.58 -0.39 -0.72 16 7 C -0.46 -5.07 5.56 -39.58 -0.22 -5.29 16 8 S 1.32 13.79 13.19 -107.50 -1.42 12.37 16 9 O -0.85 -13.24 14.01 -35.23 -0.49 -13.74 16 10 C -0.44 -5.47 5.88 37.16 0.22 -5.25 16 11 C -0.10 -1.57 5.22 -26.73 -0.14 -1.71 16 12 C -0.10 -1.89 5.15 -26.73 -0.14 -2.03 16 13 C -0.02 -0.40 4.04 -27.88 -0.11 -0.52 16 14 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 18 Si 0.88 21.94 27.47 -169.99 -4.67 17.27 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 21 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 22 H 0.07 0.92 7.64 -51.93 -0.40 0.52 16 23 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 24 H 0.14 2.14 4.43 -53.86 -0.24 1.90 16 25 H 0.12 1.12 8.05 -52.48 -0.42 0.69 16 26 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 27 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 28 H 0.14 0.63 8.06 -52.49 -0.42 0.20 16 29 H 0.09 1.20 7.64 -51.92 -0.40 0.80 16 30 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 35 H 0.01 0.36 7.20 -51.93 -0.37 -0.01 16 36 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 316.79 15.07 4.77 4.77 Total: -1.00 -36.06 316.79 -9.30 -45.36 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.61 Total: -1.82 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: -2.66 Total: -36.68 kcal Atomic # 7 Polarization: -28.32 SS G_CDS: 0.77 Total: -27.55 kcal Atomic # 8 Polarization: -13.24 SS G_CDS: -0.49 Total: -13.74 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.27 kcal Atomic # 16 Polarization: 13.79 SS G_CDS: -1.42 Total: 12.37 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -36.06 -9.30 -45.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385281286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.702 kcal (2) G-P(sol) polarization free energy of solvation -36.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds