Wall clock time and date at job start Mon Mar 30 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38254 * 120.00261 * 2 1 4 4 C 1.38215 * 120.00327 * 179.97438 * 3 2 1 5 5 C 1.38249 * 119.99951 * 0.02721 * 4 3 2 6 6 C 1.38221 * 120.00017 * 359.76693 * 5 4 3 7 7 C 1.38210 * 119.99814 * 180.02562 * 2 1 3 8 8 S 1.76199 * 120.00065 * 359.97438 * 7 2 1 9 9 O 1.42095 * 102.99665 * 34.06539 * 8 7 2 10 10 C 1.81395 * 103.00066 * 280.20809 * 8 7 2 11 11 C 1.53001 * 109.46968 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47238 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.47238 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46988 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99851 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99800 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00407 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00143 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47101 * 90.00116 * 18 16 14 20 20 H 1.48504 * 109.47331 * 209.99936 * 18 16 14 21 21 H 1.48506 * 109.47301 * 330.00249 * 18 16 14 22 22 H 1.09002 * 109.47192 * 262.03705 * 1 2 3 23 23 H 1.08998 * 109.46816 * 22.03508 * 1 2 3 24 24 H 1.09001 * 109.47299 * 142.03145 * 1 2 3 25 25 H 1.08006 * 120.00114 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.00125 * 179.97438 * 4 3 2 27 27 H 1.07998 * 120.00542 * 179.97438 * 5 4 3 28 28 H 1.08001 * 120.00358 * 180.25148 * 6 5 4 29 29 H 1.08998 * 109.46895 * 60.00598 * 10 8 7 30 30 H 1.08991 * 109.47499 * 299.99758 * 10 8 7 31 31 H 1.09002 * 109.47342 * 300.00367 * 11 10 8 32 32 H 1.09001 * 109.47378 * 60.00176 * 11 10 8 33 33 H 1.09002 * 109.47143 * 300.00353 * 12 11 10 34 34 H 1.09008 * 109.47323 * 60.00258 * 12 11 10 35 35 H 1.09006 * 109.47210 * 299.99748 * 13 12 11 36 36 H 1.09001 * 109.47378 * 60.00040 * 13 12 11 37 37 H 0.96998 * 120.00766 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5806 -1.1970 0.0048 7 6 2.1980 -1.1970 -0.0005 8 16 1.3170 -2.7229 -0.0005 9 8 0.1636 -2.4259 -0.7756 10 6 0.8424 -2.9200 1.7391 11 6 0.0553 -4.2211 1.9086 12 6 -0.3457 -4.3871 3.3758 13 6 -1.1333 -5.6878 3.5452 14 6 -1.5287 -5.8510 4.9903 15 1 -1.2461 -5.1021 5.7153 16 6 -2.2504 -6.9568 5.3869 17 7 -2.5951 -7.0996 6.6480 18 14 -2.7386 -8.2524 4.1329 19 1 -1.6749 -9.2854 4.0486 20 1 -4.0143 -8.8885 4.5492 21 1 -2.9145 -7.6136 2.8038 22 1 -0.3634 -0.1424 1.0178 23 1 -0.3633 0.9526 -0.3856 24 1 -0.3634 -0.8102 -0.6322 25 1 1.6584 2.1327 0.0004 26 1 4.1205 2.1326 0.0001 27 1 5.3517 -0.0001 0.0005 28 1 4.1206 -2.1323 0.0089 29 1 0.2213 -2.0778 2.0439 30 1 1.7384 -2.9538 2.3586 31 1 -0.8409 -4.1870 1.2891 32 1 0.6759 -5.0636 1.6036 33 1 0.5503 -4.4210 3.9957 34 1 -0.9666 -3.5445 3.6804 35 1 -2.0293 -5.6534 2.9254 36 1 -0.5129 -6.5306 3.2405 37 1 -3.1024 -7.8778 6.9271 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385281286.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:11 Heat of formation + Delta-G solvation = -50.789010 kcal Electronic energy + Delta-G solvation = -17226.012922 eV Core-core repulsion = 14479.452553 eV Total energy + Delta-G solvation = -2746.560369 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.13501 -37.07024 -36.83458 -34.62610 -33.67012 -32.00850 -31.65456 -27.87783 -27.24420 -24.08754 -23.20091 -22.49253 -21.75024 -18.97082 -18.82644 -17.50737 -16.86531 -16.48080 -16.38421 -16.23299 -15.83677 -15.09066 -14.84866 -14.77133 -14.60151 -14.03591 -13.89310 -13.68476 -13.45805 -13.17256 -12.91643 -12.67159 -12.56731 -12.38305 -12.07389 -12.02095 -11.76864 -11.63029 -11.38505 -11.30471 -10.81393 -10.75550 -10.06286 -9.65181 -9.28017 -8.29407 -6.33965 -0.03530 0.42439 0.93599 1.36725 1.39865 1.52065 1.81297 2.37522 2.62929 3.02175 3.06047 3.81524 3.96239 3.98643 4.06684 4.14404 4.34520 4.38051 4.50009 4.51542 4.60738 4.64099 4.83524 4.88042 4.93926 5.02861 5.09762 5.12883 5.26107 5.34806 5.36687 5.50876 5.54198 5.56459 5.64230 5.68623 6.04715 6.29091 6.74529 7.31028 8.87714 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.037256 B = 0.003488 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.368970 B = 8026.054170 C = 8146.401647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.042 4.042 3 C -0.163 4.163 4 C -0.087 4.087 5 C -0.148 4.148 6 C -0.036 4.036 7 C -0.483 4.483 8 S 1.389 4.611 9 O -0.899 6.899 10 C -0.448 4.448 11 C -0.100 4.100 12 C -0.093 4.093 13 C -0.017 4.017 14 C -0.537 4.537 15 H 0.027 0.973 16 C 0.000 4.000 17 N -0.955 5.955 18 Si 0.955 3.045 19 H -0.257 1.257 20 H -0.286 1.286 21 H -0.248 1.248 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.117 0.883 25 H 0.125 0.875 26 H 0.147 0.853 27 H 0.160 0.840 28 H 0.181 0.819 29 H 0.063 0.937 30 H 0.140 0.860 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.012 0.988 36 H 0.032 0.968 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.417 11.983 -18.176 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.043 4.043 3 C -0.182 4.182 4 C -0.105 4.105 5 C -0.167 4.167 6 C -0.054 4.054 7 C -0.580 4.580 8 S 1.590 4.410 9 O -0.895 6.895 10 C -0.584 4.584 11 C -0.138 4.138 12 C -0.132 4.132 13 C -0.054 4.054 14 C -0.575 4.575 15 H 0.045 0.955 16 C -0.197 4.197 17 N -0.596 5.596 18 Si 0.777 3.223 19 H -0.182 1.182 20 H -0.212 1.212 21 H -0.172 1.172 22 H 0.075 0.925 23 H 0.089 0.911 24 H 0.134 0.866 25 H 0.143 0.857 26 H 0.165 0.835 27 H 0.178 0.822 28 H 0.198 0.802 29 H 0.082 0.918 30 H 0.158 0.842 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.030 0.970 36 H 0.050 0.950 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 18.129 11.294 -18.847 28.485 hybrid contribution -2.151 1.784 1.231 3.053 sum 15.978 13.078 -17.616 27.141 Atomic orbital electron populations 1.21806 0.92665 1.06066 1.03274 1.20071 0.95506 0.94076 0.94695 1.21420 0.95791 0.97500 1.03485 1.21695 0.93568 1.00131 0.95095 1.21731 1.01833 0.92131 1.01006 1.21434 0.90983 1.00886 0.92133 1.27578 1.04246 1.12432 1.13727 1.68631 0.95090 0.95024 0.82299 1.92755 1.53071 1.81268 1.62394 1.27786 1.07922 1.01886 1.20854 1.21246 0.99494 0.96471 0.96617 1.21349 0.99211 0.96758 0.95890 1.19606 0.95885 0.95822 0.94099 1.21573 1.34492 1.06669 0.94718 0.95466 1.26111 0.95333 1.00811 0.97416 1.70081 1.40626 1.30690 1.18169 0.85590 0.78090 0.78762 0.79817 1.18187 1.21236 1.17172 0.92469 0.91136 0.86561 0.85669 0.83487 0.82191 0.80211 0.91837 0.84151 0.93421 0.87758 0.92074 0.95176 0.96971 0.94990 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.07 9.30 71.24 0.66 -4.41 16 2 C -0.04 -1.05 5.86 -19.87 -0.12 -1.16 16 3 C -0.16 -3.37 9.67 22.27 0.22 -3.16 16 4 C -0.09 -1.33 10.05 22.27 0.22 -1.10 16 5 C -0.15 -1.83 10.05 22.27 0.22 -1.61 16 6 C -0.04 -0.46 9.75 22.27 0.22 -0.24 16 7 C -0.48 -9.67 5.56 22.27 0.12 -9.55 16 8 S 1.39 26.88 13.19 -56.49 -0.75 26.14 16 9 O -0.90 -28.18 14.01 -148.98 -2.09 -30.27 16 10 C -0.45 -10.52 5.88 71.98 0.42 -10.10 16 11 C -0.10 -2.89 5.22 30.59 0.16 -2.73 16 12 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 13 C -0.02 -0.79 4.04 29.85 0.12 -0.67 16 14 C -0.54 -31.89 9.66 25.60 0.25 -31.64 16 15 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 16 C 0.00 -0.03 5.47 84.65 0.46 0.43 16 17 N -0.95 -61.24 13.96 21.45 0.30 -60.94 16 18 Si 0.95 44.80 27.47 68.60 1.88 46.68 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 22 H 0.06 1.65 7.64 -2.39 -0.02 1.63 16 23 H 0.07 1.75 8.03 -2.39 -0.02 1.73 16 24 H 0.12 3.83 4.43 -32.92 -0.15 3.68 16 25 H 0.13 2.30 8.05 -2.91 -0.02 2.27 16 26 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 27 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 28 H 0.18 0.63 8.06 -2.91 -0.02 0.61 16 29 H 0.06 1.80 7.64 -2.39 -0.02 1.78 16 30 H 0.14 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.01 0.57 7.20 -2.38 -0.02 0.56 16 36 H 0.03 1.40 7.57 -2.39 -0.02 1.38 16 37 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -81.95 316.79 3.32 -78.63 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: 0.84 Total: 9.19 kcal Atomic # 6 Polarization: -72.55 SS G_CDS: 3.12 Total: -69.43 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: 0.30 Total: -60.94 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -2.09 Total: -30.27 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 1.88 Total: 46.68 kcal Atomic # 16 Polarization: 26.88 SS G_CDS: -0.75 Total: 26.14 kcal Total: -81.95 3.32 -78.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385281286.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.843 kcal (2) G-P(sol) polarization free energy of solvation -81.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds