Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99797 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99806 * 3 2 1 6 6 H 1.48496 * 109.47209 * 149.99843 * 3 2 1 7 7 C 1.37876 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.46728 * 180.02562 * 12 11 10 14 14 C 1.35905 * 116.99842 * 179.97438 * 13 12 11 15 15 C 1.38852 * 119.95809 * 359.72616 * 14 13 12 16 16 C 1.38495 * 120.27390 * 179.72638 * 15 14 13 17 17 F 1.35098 * 119.91049 * 180.29471 * 16 15 14 18 18 C 1.38177 * 120.18008 * 0.54723 * 16 15 14 19 19 C 1.39811 * 119.90836 * 359.72714 * 18 16 15 20 20 C 1.47191 * 120.13338 * 180.02562 * 19 18 16 21 21 O 1.21249 * 120.00082 * 359.97438 * 20 19 18 22 22 C 1.38402 * 119.95449 * 179.97438 * 14 13 12 23 23 H 0.96996 * 119.99943 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47476 * 59.99513 * 9 7 2 25 25 H 1.08996 * 109.47197 * 299.99870 * 9 7 2 26 26 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 27 27 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 28 28 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 29 29 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 30 30 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 31 31 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 32 32 H 1.08005 * 119.86480 * 359.97369 * 15 14 13 33 33 H 1.07996 * 120.04710 * 179.75200 * 18 16 15 34 34 H 1.08005 * 120.00025 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.09452 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4748 -6.1500 0.0018 13 8 1.7603 -7.3876 0.0018 14 6 2.5005 -8.5273 0.0018 15 6 3.8871 -8.4536 -0.0039 16 6 4.6478 -9.6109 0.0017 17 9 5.9964 -9.5305 0.0021 18 6 4.0313 -10.8475 0.0018 19 6 2.6356 -10.9306 0.0018 20 6 1.9737 -12.2453 0.0024 21 8 2.6389 -13.2590 0.0024 22 6 1.8713 -9.7600 0.0024 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8721 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 3.1014 -6.0918 0.8918 31 1 3.1014 -6.0927 -0.8882 32 1 4.3744 -7.4897 -0.0088 33 1 4.6266 -11.7485 0.0022 34 1 0.8954 -12.3070 0.0029 35 1 0.7928 -9.8175 0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385775476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -114.425931 kcal Electronic energy + Delta-G solvation = -18457.429734 eV Core-core repulsion = 15141.896685 eV Total energy + Delta-G solvation = -3315.533049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.24504 -40.56011 -39.38615 -37.33223 -34.85482 -32.54474 -31.58262 -30.49208 -28.80774 -25.93486 -24.72210 -23.05173 -22.22175 -21.08877 -20.23512 -18.60008 -17.22726 -16.72919 -16.51618 -16.44691 -16.25980 -15.82440 -15.62504 -15.11421 -14.63658 -14.60972 -14.38327 -14.14752 -13.18749 -12.74296 -12.58147 -12.36434 -12.08960 -11.82030 -11.59439 -11.44050 -10.98091 -10.65269 -10.58748 -10.53964 -10.33508 -9.79157 -9.43400 -9.37211 -9.13499 -8.63183 -8.39507 -6.04546 -4.07414 0.08339 0.84270 1.95811 2.88517 3.23898 3.28817 3.35333 3.38354 3.60599 3.95762 4.41897 4.47492 4.53316 4.67475 4.75309 4.92629 5.02474 5.05226 5.31399 5.38882 5.49245 5.63329 5.69737 5.75852 5.87365 5.90790 6.24337 6.28347 6.59725 6.74707 6.91836 6.97284 7.13865 7.61534 7.74571 7.94875 8.36507 8.99650 9.57035 11.06767 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.002706 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.783926 B =10343.509972 C =10992.242166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.108 4.108 11 C -0.117 4.117 12 C 0.055 3.945 13 O -0.305 6.305 14 C 0.157 3.843 15 C -0.217 4.217 16 C 0.129 3.871 17 F -0.133 7.133 18 C -0.142 4.142 19 C -0.128 4.128 20 C 0.389 3.611 21 O -0.454 6.454 22 C -0.115 4.115 23 H 0.261 0.739 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.116 0.884 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.243 -21.507 0.005 21.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.145 4.145 11 C -0.154 4.154 12 C -0.019 4.019 13 O -0.218 6.218 14 C 0.110 3.890 15 C -0.237 4.237 16 C 0.110 3.890 17 F -0.112 7.112 18 C -0.161 4.161 19 C -0.130 4.130 20 C 0.246 3.754 21 O -0.326 6.326 22 C -0.134 4.134 23 H 0.071 0.929 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.166 0.834 33 H 0.163 0.837 34 H 0.132 0.868 35 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.294 -21.890 0.011 22.307 hybrid contribution 0.959 1.353 -0.012 1.658 sum 5.253 -20.537 -0.001 21.198 Atomic orbital electron populations 1.69964 1.06063 1.26679 1.50718 1.25032 0.94863 0.99308 0.95276 0.86590 0.79832 0.83431 0.78128 1.20637 1.21182 1.19886 1.21242 0.93030 0.91073 1.50777 0.92687 1.19084 0.93927 0.91076 0.97451 1.21597 0.99318 0.93012 1.00608 1.21716 0.97967 0.92314 1.03439 1.23240 0.96325 0.80936 1.01441 1.86178 1.35572 1.12731 1.87307 1.18642 0.88906 0.87564 0.93931 1.21546 0.93777 0.99515 1.08873 1.17241 0.77089 0.93625 1.01071 1.91537 1.28817 1.97132 1.93674 1.21233 0.94700 0.96998 1.03216 1.20529 0.93344 0.95866 1.03213 1.24098 0.95362 0.85915 0.70006 1.90542 1.69934 1.38043 1.34076 1.20711 1.01119 0.88562 1.03030 0.92940 0.96444 0.96421 0.93077 0.93072 0.91106 0.91109 0.91753 0.91767 0.83421 0.83733 0.86774 0.83306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.54 4.97 -27.89 -0.14 0.40 16 10 C -0.11 -2.04 5.15 -26.73 -0.14 -2.18 16 11 C -0.12 -1.81 5.58 -26.73 -0.15 -1.96 16 12 C 0.05 0.69 4.74 37.16 0.18 0.86 16 13 O -0.30 -3.78 10.13 -19.44 -0.20 -3.97 16 14 C 0.16 1.68 6.68 -39.29 -0.26 1.42 16 15 C -0.22 -2.31 9.01 -39.26 -0.35 -2.66 16 16 C 0.13 1.37 7.29 -39.51 -0.29 1.09 16 17 F -0.13 -1.52 17.26 2.25 0.04 -1.48 16 18 C -0.14 -1.39 9.57 -39.02 -0.37 -1.76 16 19 C -0.13 -1.08 5.87 -105.09 -0.62 -1.69 16 20 C 0.39 2.72 11.46 34.37 0.39 3.12 16 21 O -0.45 -4.89 17.16 5.58 0.10 -4.79 16 22 C -0.12 -0.98 9.73 -38.94 -0.38 -1.36 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.74 7.67 -51.93 -0.40 0.35 16 31 H 0.06 0.74 7.64 -51.93 -0.40 0.34 16 32 H 0.15 1.46 6.27 -52.48 -0.33 1.13 16 33 H 0.14 1.36 7.64 -52.49 -0.40 0.96 16 34 H 0.12 0.33 8.06 -52.48 -0.42 -0.10 16 35 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -31.41 313.56 -6.61 -38.02 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -4.45 Total: -4.94 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -2.54 Total: -18.05 kcal Atomic # 7 Polarization: -26.58 SS G_CDS: 0.74 Total: -25.84 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.10 Total: -8.76 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.41 -6.61 -38.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385775476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.406 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds