Wall clock time and date at job start Mon Mar 30 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86800 * 119.99719 * 2 1 4 4 H 1.48501 * 109.46755 * 269.99797 * 3 2 1 5 5 H 1.48499 * 109.47293 * 29.99806 * 3 2 1 6 6 H 1.48496 * 109.47209 * 149.99843 * 3 2 1 7 7 C 1.37876 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00335 * 0.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46997 * 180.02562 * 11 10 9 13 13 O 1.42905 * 109.46728 * 180.02562 * 12 11 10 14 14 C 1.35905 * 116.99842 * 179.97438 * 13 12 11 15 15 C 1.38852 * 119.95809 * 359.72616 * 14 13 12 16 16 C 1.38495 * 120.27390 * 179.72638 * 15 14 13 17 17 F 1.35098 * 119.91049 * 180.29471 * 16 15 14 18 18 C 1.38177 * 120.18008 * 0.54723 * 16 15 14 19 19 C 1.39811 * 119.90836 * 359.72714 * 18 16 15 20 20 C 1.47191 * 120.13338 * 180.02562 * 19 18 16 21 21 O 1.21249 * 120.00082 * 359.97438 * 20 19 18 22 22 C 1.38402 * 119.95449 * 179.97438 * 14 13 12 23 23 H 0.96996 * 119.99943 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.47476 * 59.99513 * 9 7 2 25 25 H 1.08996 * 109.47197 * 299.99870 * 9 7 2 26 26 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 27 27 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 28 28 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 29 29 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 30 30 H 1.09000 * 109.47486 * 60.00167 * 12 11 10 31 31 H 1.09001 * 109.47362 * 299.99445 * 12 11 10 32 32 H 1.08005 * 119.86480 * 359.97369 * 15 14 13 33 33 H 1.07996 * 120.04710 * 179.75200 * 18 16 15 34 34 H 1.08005 * 120.00025 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.09452 * 359.97438 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 6 2.4748 -6.1500 0.0018 13 8 1.7603 -7.3876 0.0018 14 6 2.5005 -8.5273 0.0018 15 6 3.8871 -8.4536 -0.0039 16 6 4.6478 -9.6109 0.0017 17 9 5.9964 -9.5305 0.0021 18 6 4.0313 -10.8475 0.0018 19 6 2.6356 -10.9306 0.0018 20 6 1.9737 -12.2453 0.0024 21 8 2.6389 -13.2590 0.0024 22 6 1.8713 -9.7600 0.0024 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8896 25 1 0.6242 -2.5567 0.8903 26 1 2.8720 -3.6043 0.8905 27 1 2.8721 -3.6043 -0.8894 28 1 0.8535 -5.0451 -0.8886 29 1 0.8541 -5.0445 0.8914 30 1 3.1014 -6.0918 0.8918 31 1 3.1014 -6.0927 -0.8882 32 1 4.3744 -7.4897 -0.0088 33 1 4.6266 -11.7485 0.0022 34 1 0.8954 -12.3070 0.0029 35 1 0.7928 -9.8175 0.0032 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385775476.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:00 Heat of formation + Delta-G solvation = -132.146842 kcal Electronic energy + Delta-G solvation = -18458.198170 eV Core-core repulsion = 15141.896685 eV Total energy + Delta-G solvation = -3316.301485 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.07853 -41.34302 -40.11976 -38.16090 -36.46687 -34.42309 -32.31611 -31.55318 -30.22070 -27.15949 -25.95109 -23.85175 -23.62046 -21.89678 -21.79495 -19.40265 -18.47905 -17.94900 -17.45794 -17.41271 -17.27456 -16.71973 -16.52635 -16.33962 -15.80730 -15.59125 -15.38833 -15.25603 -14.50541 -14.07891 -13.78234 -13.64492 -13.36205 -12.94617 -12.90023 -12.69229 -12.60324 -12.37792 -12.06972 -11.81606 -11.38288 -11.34622 -11.14158 -10.94024 -10.54875 -10.12060 -9.42245 -8.20033 -6.30949 -0.59943 0.07497 1.33469 1.40825 1.41668 1.52701 1.99563 2.41556 2.53467 2.93594 3.13480 3.28038 3.75759 3.78929 3.95864 3.97141 3.99181 4.05691 4.32681 4.38797 4.53338 4.58519 4.76247 4.84682 4.91354 4.98585 5.06544 5.12036 5.24206 5.27312 5.47218 5.54048 5.76176 5.86955 6.22758 6.25526 6.39488 6.87006 7.38560 8.91830 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041180 B = 0.002706 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.783926 B =10343.509972 C =10992.242166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.263 1.263 7 C -0.544 4.544 8 H 0.061 0.939 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.109 4.109 12 C 0.063 3.937 13 O -0.314 6.314 14 C 0.138 3.862 15 C -0.222 4.222 16 C 0.113 3.887 17 F -0.142 7.142 18 C -0.148 4.148 19 C -0.129 4.129 20 C 0.401 3.599 21 O -0.495 6.495 22 C -0.098 4.098 23 H 0.263 0.737 24 H -0.007 1.007 25 H -0.007 1.007 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.451 -22.162 0.000 22.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.200 4.200 3 Si 0.788 3.212 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.146 4.146 12 C -0.012 4.012 13 O -0.228 6.228 14 C 0.092 3.908 15 C -0.241 4.241 16 C 0.093 3.907 17 F -0.121 7.121 18 C -0.167 4.167 19 C -0.130 4.130 20 C 0.261 3.739 21 O -0.369 6.369 22 C -0.117 4.117 23 H 0.072 0.928 24 H 0.011 0.989 25 H 0.011 0.989 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.169 0.831 33 H 0.161 0.839 34 H 0.186 0.814 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.512 -22.556 0.005 23.003 hybrid contribution 0.851 1.502 -0.011 1.726 sum 5.362 -21.054 -0.006 21.727 Atomic orbital electron populations 1.70096 1.07794 1.27764 1.51773 1.25988 0.95768 1.03394 0.94832 0.85466 0.78690 0.78534 0.78480 1.19806 1.20851 1.18707 1.21738 0.93642 0.92449 1.50362 0.92033 1.19019 0.94528 0.93007 0.95014 1.21359 0.98118 0.92591 1.01280 1.21478 0.98119 0.91997 1.03040 1.22997 0.95216 0.80324 1.02618 1.86117 1.35821 1.12922 1.87939 1.18843 0.88944 0.87684 0.95349 1.21609 0.94013 0.99658 1.08851 1.17369 0.76822 0.94123 1.02352 1.91509 1.29483 1.97200 1.93909 1.21405 0.95753 0.96622 1.02937 1.20829 0.92734 0.97006 1.02474 1.24786 0.97123 0.84201 0.67799 1.90550 1.71112 1.39085 1.36148 1.21023 1.02638 0.87405 1.00637 0.92783 0.98905 0.98882 0.92360 0.92333 0.91566 0.91573 0.90642 0.90647 0.83112 0.83905 0.81396 0.80241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.24 16 9 C 0.02 1.09 4.97 29.84 0.15 1.24 16 10 C -0.10 -3.59 5.15 30.59 0.16 -3.43 16 11 C -0.11 -3.28 5.58 30.60 0.17 -3.11 16 12 C 0.06 1.47 4.74 71.98 0.34 1.81 16 13 O -0.31 -7.17 10.13 -92.49 -0.94 -8.11 16 14 C 0.14 2.69 6.68 22.46 0.15 2.84 16 15 C -0.22 -4.45 9.01 22.48 0.20 -4.25 16 16 C 0.11 2.34 7.29 22.32 0.16 2.50 16 17 F -0.14 -3.25 17.26 44.97 0.78 -2.47 16 18 C -0.15 -2.76 9.57 22.64 0.22 -2.54 16 19 C -0.13 -1.87 5.87 -20.17 -0.12 -1.98 16 20 C 0.40 4.41 11.46 70.17 0.80 5.22 16 21 O -0.49 -9.84 17.16 -2.93 -0.05 -9.89 16 22 C -0.10 -1.38 9.73 22.69 0.22 -1.15 16 23 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.08 1.60 7.67 -2.39 -0.02 1.58 16 31 H 0.08 1.60 7.64 -2.39 -0.02 1.58 16 32 H 0.15 2.82 6.27 -2.91 -0.02 2.80 16 33 H 0.14 2.66 7.64 -2.91 -0.02 2.63 16 34 H 0.17 0.11 8.06 -2.91 -0.02 0.09 16 35 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -68.84 313.56 6.34 -62.50 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: 1.09 Total: 1.04 kcal Atomic # 6 Polarization: -35.80 SS G_CDS: 3.15 Total: -32.65 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.28 Total: -56.09 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.99 Total: -18.00 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -68.84 6.34 -62.50 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385775476.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.643 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds