Wall clock time and date at job start Mon Mar 30 2020 06:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47196 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47196 * 59.99929 * 3 2 1 7 7 C 1.37882 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46981 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47062 * 179.97438 * 12 11 10 14 14 C 1.35656 * 116.99928 * 179.97438 * 13 12 11 15 15 C 1.38910 * 120.17562 * 90.00952 * 14 13 12 16 16 F 1.35104 * 119.96453 * 0.02562 * 15 14 13 17 17 C 1.38197 * 120.06780 * 179.74720 * 15 14 13 18 18 C 1.38634 * 120.43327 * 0.26943 * 17 15 14 19 19 C 1.37655 * 120.35780 * 359.97438 * 18 17 15 20 20 C 1.40058 * 119.92088 * 0.02562 * 19 18 17 21 21 C 1.46787 * 120.21463 * 180.02562 * 20 19 18 22 22 O 1.21303 * 119.99478 * 0.02562 * 21 20 19 23 23 H 0.96995 * 120.00162 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47124 * 60.00466 * 9 7 2 25 25 H 1.08992 * 109.47334 * 300.00289 * 9 7 2 26 26 H 1.08996 * 109.47256 * 60.00079 * 10 9 7 27 27 H 1.09007 * 109.46931 * 300.00374 * 10 9 7 28 28 H 1.09002 * 109.47440 * 60.00202 * 11 10 9 29 29 H 1.09007 * 109.47240 * 299.99752 * 11 10 9 30 30 H 1.09004 * 109.47245 * 60.00527 * 12 11 10 31 31 H 1.08992 * 109.47339 * 299.99829 * 12 11 10 32 32 H 1.07999 * 119.78483 * 180.25224 * 17 15 14 33 33 H 1.07999 * 119.82282 * 180.02562 * 18 17 15 34 34 H 1.08002 * 120.03741 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.00372 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 6 1.4802 -4.9871 0.0033 12 6 2.4744 -6.1500 0.0037 13 8 1.7599 -7.3876 0.0048 14 6 2.4987 -8.5253 0.0047 15 6 2.8798 -9.1105 1.2055 16 9 2.5137 -8.5462 2.3773 17 6 3.6280 -10.2723 1.2029 18 6 4.0087 -10.8597 0.0062 19 6 3.6451 -10.2921 -1.1940 20 6 2.8869 -9.1146 -1.2087 21 6 2.4951 -8.5042 -2.4849 22 8 2.8277 -9.0199 -3.5312 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8718 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8873 28 1 0.8538 -5.0454 -0.8869 29 1 0.8532 -5.0443 0.8932 30 1 3.1011 -6.0920 0.8937 31 1 3.1010 -6.0927 -0.8863 32 1 3.9183 -10.7256 2.1392 33 1 4.5931 -11.7679 0.0156 34 1 3.9449 -10.7538 -2.1232 35 1 1.9100 -7.5964 -2.4922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385783733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:53 Heat of formation + Delta-G solvation = -110.965263 kcal Electronic energy + Delta-G solvation = -19018.477058 eV Core-core repulsion = 15703.094075 eV Total energy + Delta-G solvation = -3315.382983 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.12770 -40.47790 -38.75768 -37.67116 -34.82128 -32.52271 -31.48670 -30.43749 -28.71464 -25.55213 -24.92639 -22.87687 -21.89286 -21.46923 -20.19371 -18.33115 -17.73726 -17.39625 -16.35135 -16.05162 -15.70403 -15.47797 -15.41950 -15.03888 -14.75996 -14.46141 -14.24089 -13.86805 -13.28390 -12.71300 -12.47899 -12.39986 -12.26704 -11.82582 -11.49211 -11.30702 -10.86169 -10.61356 -10.49993 -10.25696 -9.91233 -9.73386 -9.46216 -9.37020 -9.10991 -8.97333 -8.36345 -6.01104 -4.03716 0.06214 0.63500 2.03521 2.96789 3.30437 3.37900 3.40551 3.42353 3.70642 4.02295 4.30776 4.45215 4.55497 4.70812 4.94761 5.09051 5.15432 5.20289 5.34855 5.39855 5.50340 5.57009 5.62771 5.85041 5.95320 5.96009 6.23457 6.33884 6.66226 6.81144 7.02658 7.08233 7.22082 7.66151 7.79438 7.98772 8.40542 9.03622 9.60547 11.10248 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.003344 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.123783 B = 8370.822270 C = 8926.321284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.065 3.935 13 O -0.329 6.329 14 C 0.125 3.875 15 C 0.067 3.933 16 F -0.126 7.126 17 C -0.110 4.110 18 C -0.115 4.115 19 C -0.058 4.058 20 C -0.189 4.189 21 C 0.388 3.612 22 O -0.456 6.456 23 H 0.260 0.740 24 H 0.018 0.982 25 H 0.017 0.983 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.144 0.856 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.405 -22.397 0.705 23.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.008 4.008 13 O -0.246 6.246 14 C 0.079 3.921 15 C 0.047 3.953 16 F -0.104 7.104 17 C -0.129 4.129 18 C -0.133 4.133 19 C -0.077 4.077 20 C -0.190 4.190 21 C 0.246 3.754 22 O -0.329 6.329 23 H 0.070 0.930 24 H 0.036 0.964 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.162 0.838 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.224 -22.489 0.185 23.621 hybrid contribution 0.502 1.070 0.518 1.290 sum 7.725 -21.419 0.703 22.780 Atomic orbital electron populations 1.69972 1.06054 1.26526 1.50856 1.25033 0.94855 0.99294 0.95329 0.86541 0.80095 0.83801 0.77594 1.19753 1.20998 1.21011 1.21289 0.93065 0.91072 1.50562 0.92640 1.19095 0.93943 0.91079 0.97466 1.21597 0.99301 0.93039 1.00577 1.21719 0.98003 0.92286 1.03443 1.23228 0.95738 0.80813 1.00983 1.86022 1.32638 1.11895 1.94034 1.18981 0.93066 0.89509 0.90502 1.18057 1.00567 0.95434 0.81266 1.91555 1.89759 1.84403 1.44710 1.21377 0.97159 0.93871 1.00487 1.21013 1.00613 1.00681 0.91041 1.21438 0.93812 0.93171 0.99258 1.21188 1.03110 0.99344 0.95397 1.23944 0.77357 0.88170 0.85885 1.90527 1.45885 1.61865 1.34635 0.93025 0.96404 0.96427 0.93112 0.93109 0.91137 0.91081 0.92422 0.92529 0.83789 0.84092 0.83859 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.87 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.55 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.99 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.10 5.15 -26.73 -0.14 -2.24 16 11 C -0.12 -1.90 5.58 -26.73 -0.15 -2.05 16 12 C 0.07 0.89 6.06 37.16 0.23 1.11 16 13 O -0.33 -4.45 9.10 -18.67 -0.17 -4.62 16 14 C 0.13 1.49 5.75 -38.53 -0.22 1.27 16 15 C 0.07 0.74 7.30 -39.35 -0.29 0.45 16 16 F -0.13 -1.61 17.11 2.25 0.04 -1.57 16 17 C -0.11 -0.88 10.01 -39.45 -0.39 -1.27 16 18 C -0.12 -0.79 10.02 -39.65 -0.40 -1.19 16 19 C -0.06 -0.50 9.59 -39.11 -0.38 -0.88 16 20 C -0.19 -2.00 5.88 -104.96 -0.62 -2.62 16 21 C 0.39 4.32 11.19 34.19 0.38 4.70 16 22 O -0.46 -6.15 17.16 5.54 0.10 -6.05 16 23 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 28 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 33 H 0.14 0.54 8.06 -52.49 -0.42 0.12 16 34 H 0.14 1.09 7.65 -52.49 -0.40 0.69 16 35 H 0.12 1.14 7.63 -52.48 -0.40 0.74 16 LS Contribution 316.18 15.07 4.76 4.76 Total: -1.00 -31.76 316.18 -6.65 -38.41 By element: Atomic # 1 Polarization: -0.98 SS G_CDS: -4.57 Total: -5.55 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.52 Total: -15.80 kcal Atomic # 7 Polarization: -26.87 SS G_CDS: 0.74 Total: -26.14 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -0.07 Total: -10.68 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.04 Total: -1.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.76 -6.65 -38.41 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385783733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.554 kcal (2) G-P(sol) polarization free energy of solvation -31.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds