Wall clock time and date at job start Mon Mar 30 2020 06:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47140 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47196 * 299.99610 * 3 2 1 6 6 H 1.48497 * 109.47196 * 59.99929 * 3 2 1 7 7 C 1.37882 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00362 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.46907 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.46981 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46981 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47062 * 179.97438 * 12 11 10 14 14 C 1.35656 * 116.99928 * 179.97438 * 13 12 11 15 15 C 1.38910 * 120.17562 * 90.00952 * 14 13 12 16 16 F 1.35104 * 119.96453 * 0.02562 * 15 14 13 17 17 C 1.38197 * 120.06780 * 179.74720 * 15 14 13 18 18 C 1.38634 * 120.43327 * 0.26943 * 17 15 14 19 19 C 1.37655 * 120.35780 * 359.97438 * 18 17 15 20 20 C 1.40058 * 119.92088 * 0.02562 * 19 18 17 21 21 C 1.46787 * 120.21463 * 180.02562 * 20 19 18 22 22 O 1.21303 * 119.99478 * 0.02562 * 21 20 19 23 23 H 0.96995 * 120.00162 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47124 * 60.00466 * 9 7 2 25 25 H 1.08992 * 109.47334 * 300.00289 * 9 7 2 26 26 H 1.08996 * 109.47256 * 60.00079 * 10 9 7 27 27 H 1.09007 * 109.46931 * 300.00374 * 10 9 7 28 28 H 1.09002 * 109.47440 * 60.00202 * 11 10 9 29 29 H 1.09007 * 109.47240 * 299.99752 * 11 10 9 30 30 H 1.09004 * 109.47245 * 60.00527 * 12 11 10 31 31 H 1.08992 * 109.47339 * 299.99829 * 12 11 10 32 32 H 1.07999 * 119.78483 * 180.25224 * 17 15 14 33 33 H 1.07999 * 119.82282 * 180.02562 * 18 17 15 34 34 H 1.08002 * 120.03741 * 179.97438 * 19 18 17 35 35 H 1.08003 * 120.00372 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2452 -3.6622 0.0027 11 6 1.4802 -4.9871 0.0033 12 6 2.4744 -6.1500 0.0037 13 8 1.7599 -7.3876 0.0048 14 6 2.4987 -8.5253 0.0047 15 6 2.8798 -9.1105 1.2055 16 9 2.5137 -8.5462 2.3773 17 6 3.6280 -10.2723 1.2029 18 6 4.0087 -10.8597 0.0062 19 6 3.6451 -10.2921 -1.1940 20 6 2.8869 -9.1146 -1.2087 21 6 2.4951 -8.5042 -2.4849 22 8 2.8277 -9.0199 -3.5312 23 1 -0.4850 0.8400 -0.0004 24 1 0.6240 -2.5576 -0.8881 25 1 0.6246 -2.5563 0.8919 26 1 2.8718 -3.6036 0.8926 27 1 2.8719 -3.6051 -0.8873 28 1 0.8538 -5.0454 -0.8869 29 1 0.8532 -5.0443 0.8932 30 1 3.1011 -6.0920 0.8937 31 1 3.1010 -6.0927 -0.8863 32 1 3.9183 -10.7256 2.1392 33 1 4.5931 -11.7679 0.0156 34 1 3.9449 -10.7538 -2.1232 35 1 1.9100 -7.5964 -2.4922 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385783733.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:52 Heat of formation + Delta-G solvation = -128.847049 kcal Electronic energy + Delta-G solvation = -19019.252470 eV Core-core repulsion = 15703.094075 eV Total energy + Delta-G solvation = -3316.158396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -49.99858 -41.32144 -39.71459 -38.50694 -36.49752 -34.43577 -32.28108 -31.45349 -30.20095 -26.90650 -26.10953 -23.95265 -23.23408 -22.27009 -21.83330 -19.21861 -18.58629 -18.45190 -18.21922 -17.04282 -16.64697 -16.52657 -16.49367 -16.22088 -15.93192 -15.58650 -15.25438 -15.11361 -14.48722 -14.26321 -13.77958 -13.36042 -13.33327 -13.14512 -12.91258 -12.77025 -12.50994 -12.34165 -12.19661 -11.53595 -11.35238 -11.21079 -11.12448 -10.81913 -10.55517 -10.14491 -9.78449 -8.19778 -6.30899 -0.69871 -0.10456 1.24686 1.40800 1.40888 1.54251 2.13226 2.41655 2.60935 2.90317 3.13634 3.26072 3.69160 3.82285 3.99492 4.01496 4.09806 4.18551 4.32172 4.39510 4.52465 4.58051 4.71990 4.80509 4.89423 5.03567 5.11726 5.19654 5.23966 5.26526 5.52539 5.54912 5.75564 5.86598 6.22334 6.23987 6.26456 6.86981 7.38571 8.92354 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.028532 B = 0.003344 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.123783 B = 8370.822270 C = 8926.321284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.109 4.109 12 C 0.074 3.926 13 O -0.342 6.342 14 C 0.104 3.896 15 C 0.043 3.957 16 F -0.142 7.142 17 C -0.097 4.097 18 C -0.097 4.097 19 C -0.058 4.058 20 C -0.199 4.199 21 C 0.393 3.607 22 O -0.484 6.484 23 H 0.263 0.737 24 H -0.006 1.006 25 H -0.009 1.009 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.155 0.845 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.573 -23.847 0.883 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.790 3.210 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.147 4.147 12 C 0.001 3.999 13 O -0.260 6.260 14 C 0.058 3.942 15 C 0.024 3.976 16 F -0.121 7.121 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.076 4.076 20 C -0.201 4.201 21 C 0.254 3.746 22 O -0.359 6.359 23 H 0.072 0.928 24 H 0.012 0.988 25 H 0.009 0.991 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.190 0.810 33 H 0.199 0.801 34 H 0.172 0.828 35 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 9.399 -23.953 0.371 25.734 hybrid contribution -0.176 1.407 0.485 1.499 sum 9.223 -22.546 0.856 24.374 Atomic orbital electron populations 1.70107 1.07843 1.27703 1.51818 1.26009 0.95778 1.03467 0.94806 0.85389 0.79132 0.78736 0.77730 1.18439 1.20405 1.20478 1.21762 0.93654 0.92378 1.50299 0.91973 1.19026 0.94514 0.93049 0.94986 1.21358 0.98111 0.92513 1.01265 1.21494 0.98155 0.92085 1.02955 1.22972 0.94637 0.80367 1.01928 1.85968 1.33412 1.12339 1.94276 1.19124 0.94444 0.89189 0.91397 1.18391 1.01976 0.96822 0.80448 1.91512 1.90164 1.84914 1.45476 1.21755 0.95229 0.92297 1.02297 1.21463 0.99224 1.01167 0.89626 1.21722 0.92860 0.92319 1.00676 1.21158 1.04141 1.00375 0.94432 1.24107 0.76590 0.88112 0.85823 1.90515 1.47207 1.62693 1.35490 0.92797 0.98756 0.99104 0.92622 0.92069 0.91160 0.92163 0.92188 0.90861 0.80954 0.80060 0.82751 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 2 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 3 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 4 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 9 C 0.02 1.12 4.97 29.85 0.15 1.27 16 10 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 11 C -0.11 -3.59 5.58 30.59 0.17 -3.42 16 12 C 0.07 1.97 6.06 71.98 0.44 2.41 16 13 O -0.34 -9.25 9.10 -89.72 -0.82 -10.06 16 14 C 0.10 2.38 5.75 22.95 0.13 2.51 16 15 C 0.04 0.90 7.30 22.42 0.16 1.06 16 16 F -0.14 -3.56 17.11 44.97 0.77 -2.80 16 17 C -0.10 -1.23 10.01 22.35 0.22 -1.01 16 18 C -0.10 -0.94 10.02 22.23 0.22 -0.72 16 19 C -0.06 -0.83 9.59 22.57 0.22 -0.62 16 20 C -0.20 -3.98 5.88 -20.08 -0.12 -4.10 16 21 C 0.39 8.56 11.19 70.06 0.78 9.34 16 22 O -0.48 -12.81 17.16 -3.10 -0.05 -12.87 16 23 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 24 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 25 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 26 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 28 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 33 H 0.18 0.35 8.06 -2.91 -0.02 0.32 16 34 H 0.15 1.92 7.65 -2.91 -0.02 1.90 16 35 H 0.12 2.40 7.63 -2.91 -0.02 2.38 16 Total: -1.00 -69.89 316.18 6.52 -63.36 By element: Atomic # 1 Polarization: -0.82 SS G_CDS: 1.08 Total: 0.27 kcal Atomic # 6 Polarization: -30.45 SS G_CDS: 3.23 Total: -27.22 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: 0.28 Total: -57.02 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.87 Total: -22.93 kcal Atomic # 9 Polarization: -3.56 SS G_CDS: 0.77 Total: -2.80 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.89 6.52 -63.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385783733.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.484 kcal (2) G-P(sol) polarization free energy of solvation -69.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds