Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48501 * 109.47258 * 269.99840 * 3 2 1 5 5 H 1.48499 * 109.47082 * 30.00263 * 3 2 1 6 6 H 1.48503 * 109.47117 * 149.99853 * 3 2 1 7 7 C 1.37875 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00006 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00251 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47444 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46957 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47008 * 180.02562 * 12 11 10 14 14 C 1.76202 * 103.00007 * 180.02562 * 13 12 11 15 15 C 1.38999 * 120.07816 * 0.02562 * 14 13 12 16 16 C 1.38054 * 119.91488 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.08269 * 359.72915 * 16 15 14 18 18 C 1.38278 * 120.15806 * 0.54608 * 17 16 15 19 19 C 1.50699 * 119.95736 * 179.72947 * 18 17 16 20 20 O 1.42903 * 109.47152 * 269.72851 * 19 18 17 21 21 C 1.38102 * 120.08105 * 359.45120 * 18 17 16 22 22 H 0.96996 * 119.99988 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47151 * 59.99860 * 9 7 2 24 24 H 1.09002 * 109.47242 * 300.00057 * 9 7 2 25 25 H 1.09003 * 109.46635 * 60.00137 * 10 9 7 26 26 H 1.09002 * 109.47027 * 300.00286 * 10 9 7 27 27 H 1.09003 * 109.47221 * 60.00501 * 11 10 9 28 28 H 1.09002 * 109.47379 * 300.00076 * 11 10 9 29 29 H 1.09003 * 109.46749 * 60.00208 * 12 11 10 30 30 H 1.09002 * 109.47135 * 300.00222 * 12 11 10 31 31 H 1.07997 * 120.04091 * 359.95669 * 15 14 13 32 32 H 1.08001 * 119.95779 * 180.02562 * 16 15 14 33 33 H 1.08008 * 119.91903 * 180.29582 * 17 16 15 34 34 H 1.08997 * 109.47198 * 149.72529 * 19 18 17 35 35 H 1.09008 * 109.47393 * 29.72246 * 19 18 17 36 36 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.03657 * 180.25086 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0791 0.0028 13 16 7.8756 -4.0790 0.0035 14 6 8.2720 -5.7959 0.0032 15 6 7.2567 -6.7453 0.0021 16 6 7.5711 -8.0895 0.0014 17 6 8.8945 -8.4921 -0.0039 18 6 9.9071 -7.5504 0.0030 19 6 11.3473 -7.9941 0.0034 20 8 11.8018 -8.1353 1.3508 21 6 9.6002 -6.2039 0.0036 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.6586 -3.1509 -0.8876 26 1 3.6578 -3.1498 0.8925 27 1 5.9149 -2.1220 0.8918 28 1 5.9149 -2.1234 -0.8882 29 1 5.6982 -4.5932 -0.8871 30 1 5.6982 -4.5926 0.8929 31 1 6.2232 -6.4317 0.0020 32 1 6.7828 -8.8278 0.0001 33 1 9.1374 -9.5445 -0.0092 34 1 11.9568 -7.2502 -0.5096 35 1 11.4328 -8.9513 -0.5110 36 1 12.7232 -8.4187 1.4275 37 1 10.3916 -5.4691 0.0049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385890396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = -50.524918 kcal Electronic energy + Delta-G solvation = -16464.456052 eV Core-core repulsion = 13717.907135 eV Total energy + Delta-G solvation = -2746.548917 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.53144 -36.94097 -35.43525 -32.69119 -32.06775 -31.22004 -30.00601 -26.49548 -25.42517 -23.22236 -21.82260 -21.53889 -20.16315 -17.84859 -17.46902 -16.66599 -16.44693 -15.88005 -15.35927 -14.95484 -14.29677 -14.26694 -14.07567 -13.72164 -13.44564 -12.98159 -12.85525 -12.49583 -12.18384 -12.12545 -11.54119 -11.33804 -11.27731 -10.89637 -10.70243 -10.49354 -10.20050 -9.94420 -9.88425 -9.74593 -9.54402 -9.18438 -9.16693 -8.53920 -7.47534 -6.04510 -4.02682 0.94200 1.08980 1.46499 2.40364 3.31259 3.33133 3.38702 3.42743 4.08344 4.45483 4.53213 4.60876 4.79099 4.88094 4.98420 4.98870 5.01555 5.07918 5.29392 5.29731 5.53321 5.57465 5.70758 5.81504 5.90640 6.03129 6.14178 6.21876 6.26561 6.51586 6.62596 6.63378 6.87138 7.20066 7.28432 7.41624 7.79119 8.53375 9.00106 9.58083 11.08955 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.050851 B = 0.002772 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.501543 B =10098.864210 C =10537.372596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.065 3.935 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.096 4.096 11 C -0.107 4.107 12 C -0.099 4.099 13 S -0.126 6.126 14 C -0.080 4.080 15 C -0.127 4.127 16 C -0.102 4.102 17 C -0.110 4.110 18 C -0.079 4.079 19 C 0.118 3.882 20 O -0.567 6.567 21 C -0.083 4.083 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.123 0.877 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.380 0.620 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.077 -17.073 -0.920 28.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.136 4.136 11 C -0.146 4.146 12 C -0.247 4.247 13 S 0.120 5.880 14 C -0.193 4.193 15 C -0.151 4.151 16 C -0.121 4.121 17 C -0.131 4.131 18 C -0.081 4.081 19 C 0.041 3.959 20 O -0.372 6.372 21 C -0.107 4.107 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 22.982 -15.690 -0.795 27.838 hybrid contribution 0.016 -0.419 -0.176 0.454 sum 22.998 -16.108 -0.971 28.095 Atomic orbital electron populations 1.69916 1.06315 1.26892 1.51209 1.25046 0.94750 0.99240 0.94566 0.86764 0.80381 0.83552 0.78515 1.20296 1.21396 1.18959 1.21148 0.89528 0.94451 1.50783 0.91077 1.19580 0.97112 0.92134 0.96353 1.21462 0.90482 1.00261 1.01359 1.21510 0.98361 0.91766 1.02939 1.23859 0.91763 1.03589 1.05535 1.85589 1.08890 1.01713 1.91768 1.21841 0.96352 0.97400 1.03686 1.21320 0.98728 0.93195 1.01898 1.21061 0.96459 0.95449 0.99176 1.21024 0.92425 0.99175 1.00498 1.19486 0.94392 0.93006 1.01252 1.20970 0.91429 0.99643 0.83876 1.86590 1.32829 1.91578 1.26247 1.20620 0.94468 0.95272 1.00356 0.92746 0.96545 0.96983 0.92570 0.92525 0.91295 0.91318 0.89396 0.89391 0.85378 0.85448 0.85870 0.92607 0.92583 0.77301 0.85533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.09 13.96 55.43 0.77 -27.32 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.93 9.66 -34.44 -0.33 -15.26 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.83 5.15 -26.73 -0.14 -1.97 16 11 C -0.11 -1.67 5.22 -26.73 -0.14 -1.80 16 12 C -0.10 -1.32 4.33 37.16 0.16 -1.16 16 13 S -0.13 -1.67 21.92 -107.50 -2.36 -4.03 16 14 C -0.08 -1.00 6.11 -39.04 -0.24 -1.24 16 15 C -0.13 -1.48 9.36 -39.37 -0.37 -1.85 16 16 C -0.10 -1.02 10.04 -39.62 -0.40 -1.42 16 17 C -0.11 -1.07 9.70 -39.53 -0.38 -1.45 16 18 C -0.08 -0.82 5.51 -104.66 -0.58 -1.39 16 19 C 0.12 0.88 7.17 36.01 0.26 1.14 16 20 O -0.57 -4.69 13.64 -35.23 -0.48 -5.17 16 21 C -0.08 -0.96 9.45 -39.37 -0.37 -1.34 16 22 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 23 H 0.02 0.39 7.20 -51.92 -0.37 0.02 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.09 1.10 7.75 -51.92 -0.40 0.69 16 30 H 0.09 1.11 7.75 -51.92 -0.40 0.71 16 31 H 0.13 1.39 5.88 -52.49 -0.31 1.08 16 32 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 33 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 34 H 0.06 0.34 8.08 -51.93 -0.42 -0.08 16 35 H 0.06 0.31 8.08 -51.92 -0.42 -0.11 16 36 H 0.38 1.17 9.12 45.56 0.42 1.59 16 37 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 323.44 15.07 4.87 4.87 Total: -1.00 -32.98 323.44 -9.45 -42.42 By element: Atomic # 1 Polarization: 3.21 SS G_CDS: -4.85 Total: -1.64 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.74 Total: -26.38 kcal Atomic # 7 Polarization: -28.09 SS G_CDS: 0.77 Total: -27.32 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.48 Total: -5.17 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.36 Total: -4.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.98 -9.45 -42.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385890396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.102 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds