Wall clock time and date at job start Mon Mar 30 2020 06:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48501 * 109.47258 * 269.99840 * 3 2 1 5 5 H 1.48499 * 109.47082 * 30.00263 * 3 2 1 6 6 H 1.48503 * 109.47117 * 149.99853 * 3 2 1 7 7 C 1.37875 * 120.00092 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00006 * 0.02562 * 7 2 1 9 9 C 1.50700 * 120.00251 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47444 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47179 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.46957 * 180.02562 * 11 10 9 13 13 S 1.81400 * 109.47008 * 180.02562 * 12 11 10 14 14 C 1.76202 * 103.00007 * 180.02562 * 13 12 11 15 15 C 1.38999 * 120.07816 * 0.02562 * 14 13 12 16 16 C 1.38054 * 119.91488 * 179.97438 * 15 14 13 17 17 C 1.38327 * 120.08269 * 359.72915 * 16 15 14 18 18 C 1.38278 * 120.15806 * 0.54608 * 17 16 15 19 19 C 1.50699 * 119.95736 * 179.72947 * 18 17 16 20 20 O 1.42903 * 109.47152 * 269.72851 * 19 18 17 21 21 C 1.38102 * 120.08105 * 359.45120 * 18 17 16 22 22 H 0.96996 * 119.99988 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47151 * 59.99860 * 9 7 2 24 24 H 1.09002 * 109.47242 * 300.00057 * 9 7 2 25 25 H 1.09003 * 109.46635 * 60.00137 * 10 9 7 26 26 H 1.09002 * 109.47027 * 300.00286 * 10 9 7 27 27 H 1.09003 * 109.47221 * 60.00501 * 11 10 9 28 28 H 1.09002 * 109.47379 * 300.00076 * 11 10 9 29 29 H 1.09003 * 109.46749 * 60.00208 * 12 11 10 30 30 H 1.09002 * 109.47135 * 300.00222 * 12 11 10 31 31 H 1.07997 * 120.04091 * 359.95669 * 15 14 13 32 32 H 1.08001 * 119.95779 * 180.02562 * 16 15 14 33 33 H 1.08008 * 119.91903 * 180.29582 * 17 16 15 34 34 H 1.08997 * 109.47198 * 149.72529 * 19 18 17 35 35 H 1.09008 * 109.47393 * 29.72246 * 19 18 17 36 36 H 0.96700 * 114.00311 * 180.02562 * 20 19 18 37 37 H 1.08004 * 120.03657 * 180.25086 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0216 -2.6365 0.0023 11 6 5.5516 -2.6365 0.0022 12 6 6.0616 -4.0791 0.0028 13 16 7.8756 -4.0790 0.0035 14 6 8.2720 -5.7959 0.0032 15 6 7.2567 -6.7453 0.0021 16 6 7.5711 -8.0895 0.0014 17 6 8.8945 -8.4921 -0.0039 18 6 9.9071 -7.5504 0.0030 19 6 11.3473 -7.9941 0.0034 20 8 11.8018 -8.1353 1.3508 21 6 9.6002 -6.2039 0.0036 22 1 -0.4850 0.8400 -0.0004 23 1 3.8746 -0.6800 0.8912 24 1 3.8752 -0.6804 -0.8888 25 1 3.6586 -3.1509 -0.8876 26 1 3.6578 -3.1498 0.8925 27 1 5.9149 -2.1220 0.8918 28 1 5.9149 -2.1234 -0.8882 29 1 5.6982 -4.5932 -0.8871 30 1 5.6982 -4.5926 0.8929 31 1 6.2232 -6.4317 0.0020 32 1 6.7828 -8.8278 0.0001 33 1 9.1374 -9.5445 -0.0092 34 1 11.9568 -7.2502 -0.5096 35 1 11.4328 -8.9513 -0.5110 36 1 12.7232 -8.4187 1.4275 37 1 10.3916 -5.4691 0.0049 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385890396.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:07 Heat of formation + Delta-G solvation = -71.032497 kcal Electronic energy + Delta-G solvation = -16465.345327 eV Core-core repulsion = 13717.907135 eV Total energy + Delta-G solvation = -2747.438192 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.27880 -37.52492 -36.97896 -34.69066 -32.89021 -32.00897 -31.70350 -27.57546 -26.73498 -24.20757 -23.14056 -22.42405 -21.81726 -18.89825 -18.38820 -18.25148 -17.31279 -16.64900 -16.60621 -16.32877 -15.80033 -15.13293 -14.82958 -14.77470 -14.72644 -14.46885 -14.00545 -13.79525 -13.57720 -13.16259 -13.00435 -12.77793 -12.32605 -12.28119 -11.97571 -11.77699 -11.46371 -11.40208 -11.30668 -11.11110 -10.97676 -10.76689 -10.72602 -9.95595 -8.44216 -8.29848 -6.33930 0.14223 0.28888 0.47750 1.36045 1.37890 1.41551 1.50101 2.36188 2.57420 3.05642 3.51717 3.80364 3.85158 3.88212 4.00090 4.08691 4.26231 4.31436 4.37455 4.44744 4.48749 4.57469 4.60909 4.76419 4.81353 4.96668 5.01209 5.10183 5.13237 5.21599 5.37821 5.51103 5.52591 5.60441 5.66857 5.88297 6.28146 6.74377 6.91017 7.30885 8.86949 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.050851 B = 0.002772 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.501543 B =10098.864210 C =10537.372596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.032 0.968 9 C -0.014 4.014 10 C -0.089 4.089 11 C -0.096 4.096 12 C -0.092 4.092 13 S -0.142 6.142 14 C -0.097 4.097 15 C -0.143 4.143 16 C -0.106 4.106 17 C -0.111 4.111 18 C -0.088 4.088 19 C 0.118 3.882 20 O -0.590 6.590 21 C -0.098 4.098 22 H 0.266 0.734 23 H 0.020 0.980 24 H 0.019 0.981 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.401 0.599 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.537 -17.736 -1.059 31.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.050 0.950 9 C -0.052 4.052 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.240 4.240 13 S 0.103 5.897 14 C -0.210 4.210 15 C -0.166 4.166 16 C -0.125 4.125 17 C -0.132 4.132 18 C -0.090 4.090 19 C 0.041 3.959 20 O -0.400 6.400 21 C -0.121 4.121 22 H 0.075 0.925 23 H 0.038 0.962 24 H 0.038 0.962 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.167 0.833 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.251 0.749 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 25.475 -16.382 -0.934 30.302 hybrid contribution -0.753 -0.372 -0.125 0.849 sum 24.722 -16.755 -1.059 29.883 Atomic orbital electron populations 1.70071 1.08321 1.28159 1.52783 1.26063 0.95660 1.03673 0.94178 0.85630 0.79500 0.78123 0.79235 1.19117 1.21013 1.16952 1.21537 0.92283 0.93095 1.50227 0.94958 1.19558 0.93747 0.95271 0.96603 1.21302 0.93116 0.97261 1.01185 1.21301 0.95503 0.93480 1.03207 1.23680 0.92057 1.02020 1.06202 1.85520 1.08465 1.03326 1.92375 1.21896 0.97143 0.96641 1.05315 1.21485 0.98708 0.93933 1.02507 1.21392 0.97537 0.95262 0.98310 1.21408 0.92123 1.00470 0.99170 1.19906 0.96335 0.92537 1.00242 1.21042 0.89817 1.01156 0.83891 1.86520 1.34858 1.91884 1.26743 1.20802 0.94199 0.96262 1.00871 0.92519 0.96201 0.96239 0.92751 0.92856 0.91147 0.90957 0.88674 0.88899 0.85187 0.83198 0.83336 0.91495 0.90246 0.74856 0.85320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 2 C 0.00 0.04 5.47 84.65 0.46 0.51 16 3 Si 0.95 44.78 27.47 68.60 1.88 46.66 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.25 -10.74 6.54 99.48 0.65 -10.09 16 7 C -0.53 -31.11 9.66 25.60 0.25 -30.87 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 9 C -0.01 -0.66 4.04 29.85 0.12 -0.54 16 10 C -0.09 -3.35 5.15 30.59 0.16 -3.19 16 11 C -0.10 -2.87 5.22 30.60 0.16 -2.71 16 12 C -0.09 -2.33 4.33 71.98 0.31 -2.02 16 13 S -0.14 -3.67 21.92 -56.49 -1.24 -4.91 16 14 C -0.10 -2.37 6.11 22.62 0.14 -2.23 16 15 C -0.14 -3.15 9.36 22.41 0.21 -2.94 16 16 C -0.11 -1.92 10.04 22.25 0.22 -1.69 16 17 C -0.11 -1.88 9.70 22.30 0.22 -1.67 16 18 C -0.09 -1.64 5.51 -19.89 -0.11 -1.75 16 19 C 0.12 1.46 7.17 71.24 0.51 1.97 16 20 O -0.59 -8.47 13.64 -148.98 -2.03 -10.50 16 21 C -0.10 -2.17 9.45 22.41 0.21 -1.95 16 22 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 23 H 0.02 0.91 7.20 -2.38 -0.02 0.89 16 24 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 25 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.09 2.27 7.75 -2.39 -0.02 2.25 16 30 H 0.09 2.26 7.75 -2.39 -0.02 2.24 16 31 H 0.13 2.71 5.88 -2.91 -0.02 2.69 16 32 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.07 0.66 8.08 -2.39 -0.02 0.64 16 35 H 0.08 0.60 8.08 -2.38 -0.02 0.58 16 36 H 0.40 1.55 9.12 -74.06 -0.68 0.87 16 37 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -71.51 323.44 2.09 -69.42 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 0.32 Total: 8.63 kcal Atomic # 6 Polarization: -51.95 SS G_CDS: 2.86 Total: -49.09 kcal Atomic # 7 Polarization: -60.52 SS G_CDS: 0.30 Total: -60.22 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -2.03 Total: -10.50 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.66 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.24 Total: -4.91 kcal Total: -71.51 2.09 -69.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385890396.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.617 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds