Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47417 * 2 1 4 4 C 1.33392 * 125.20109 * 89.99886 * 3 2 1 5 5 C 1.38426 * 114.91558 * 179.79425 * 4 3 2 6 6 C 1.33384 * 114.92332 * 0.42808 * 5 4 3 7 7 C 1.50703 * 125.20244 * 179.86199 * 6 5 4 8 8 H 1.08997 * 109.48025 * 339.69651 * 7 6 5 9 9 C 1.53084 * 109.48277 * 99.72103 * 7 6 5 10 10 C 1.53174 * 109.16456 * 177.60348 * 9 7 6 11 11 C 1.53176 * 109.03724 * 303.01556 * 10 9 7 12 12 C 1.53091 * 109.21206 * 56.94941 * 11 10 9 13 13 H 1.08998 * 109.48266 * 62.40567 * 12 11 10 14 14 C 1.50699 * 109.48010 * 182.43847 * 12 11 10 15 15 H 1.07997 * 120.00019 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99807 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00303 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99802 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47270 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47167 * 120.00296 * 18 16 14 21 21 H 1.48502 * 109.47085 * 240.00350 * 18 16 14 22 22 O 1.42906 * 109.48695 * 219.66731 * 7 6 5 23 23 S 1.75881 * 125.20113 * 270.02671 * 3 2 1 24 24 H 1.08997 * 109.47175 * 300.00669 * 1 2 3 25 25 H 1.09006 * 109.46917 * 60.00028 * 1 2 3 26 26 H 1.08994 * 109.47715 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46828 * 240.00016 * 2 1 3 28 28 H 1.09000 * 109.46501 * 119.99970 * 2 1 3 29 29 H 1.07995 * 122.54098 * 0.02562 * 4 3 2 30 30 H 1.08002 * 122.53525 * 180.27490 * 5 4 3 31 31 H 1.09007 * 109.52269 * 57.69476 * 9 7 6 32 32 H 1.09000 * 109.57238 * 297.54246 * 9 7 6 33 33 H 1.09004 * 109.54572 * 183.15149 * 10 9 7 34 34 H 1.08995 * 109.54814 * 62.88826 * 10 9 7 35 35 H 1.09002 * 109.52410 * 176.88783 * 11 10 9 36 36 H 1.09004 * 109.52533 * 297.01429 * 11 10 9 37 37 H 0.96997 * 120.00102 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2888 2.1457 1.0900 5 6 2.7471 3.4283 0.8428 6 6 2.8544 3.7479 -0.4477 7 6 3.3251 5.0781 -0.9770 8 1 3.2201 5.8360 -0.2007 9 6 4.7950 4.9716 -1.3911 10 6 5.2488 6.3095 -1.9832 11 6 4.3377 6.6694 -3.1608 12 6 2.8849 6.7098 -2.6799 13 1 2.7731 7.4892 -1.9261 14 6 1.9774 7.0045 -3.8463 15 1 2.3944 7.1482 -4.8321 16 6 0.6146 7.0896 -3.6551 17 7 0.1067 6.9142 -2.4547 18 14 -0.5104 7.4542 -5.1011 19 1 0.3025 7.6082 -6.3342 20 1 -1.4690 6.3338 -5.2773 21 1 -1.2592 8.7101 -4.8413 22 8 2.5374 5.4455 -2.1114 23 16 2.3698 2.3769 -1.4372 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 2.1527 1.7599 2.0895 30 1 2.9964 4.1188 1.6350 31 1 4.9070 4.1859 -2.1383 32 1 5.4038 4.7341 -0.5188 33 1 6.2781 6.2238 -2.3315 34 1 5.1838 7.0862 -1.2213 35 1 4.6188 7.6466 -3.5535 36 1 4.4413 5.9185 -3.9443 37 1 -0.8520 6.9745 -2.3201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390549585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -36.852823 kcal Electronic energy + Delta-G solvation = -18183.902312 eV Core-core repulsion = 15437.946262 eV Total energy + Delta-G solvation = -2745.956051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.49696 -37.34148 -33.85760 -32.80574 -32.39164 -30.60635 -27.82974 -25.63420 -24.42170 -22.55072 -21.98980 -21.47331 -19.36065 -18.39253 -16.71509 -16.42669 -15.08038 -14.73526 -14.58999 -14.31247 -14.02130 -13.75304 -13.64218 -13.01059 -12.84141 -12.57453 -12.05946 -11.86841 -11.74092 -11.45540 -11.32368 -10.98931 -10.97266 -10.80805 -10.68013 -10.36259 -10.28515 -10.15764 -9.87729 -9.70241 -8.89629 -8.53810 -8.13449 -7.92963 -7.79471 -6.01122 -4.13665 1.45664 2.11836 2.59167 3.14651 3.30411 3.38456 3.41864 4.41947 4.84246 4.93994 5.13981 5.30861 5.37487 5.51701 5.53364 5.59392 5.66510 5.84096 5.86475 5.90378 5.99719 6.05997 6.10275 6.13738 6.25720 6.30634 6.44989 6.58512 6.64684 6.72063 6.83484 6.85800 6.88076 6.97462 7.49937 7.89641 8.26802 8.75858 9.09198 9.56766 11.06202 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.006716 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.817461 B = 4168.159547 C = 5282.754088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.208 4.208 4 C -0.134 4.134 5 C -0.155 4.155 6 C -0.136 4.136 7 C 0.149 3.851 8 H 0.058 0.942 9 C -0.139 4.139 10 C -0.120 4.120 11 C -0.145 4.145 12 C 0.219 3.781 13 H 0.015 0.985 14 C -0.526 4.526 15 H 0.065 0.935 16 C 0.079 3.921 17 N -0.857 5.857 18 Si 0.890 3.110 19 H -0.271 1.271 20 H -0.282 1.282 21 H -0.283 1.283 22 O -0.348 6.348 23 S 0.144 5.856 24 H 0.057 0.943 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.402 -9.880 6.043 12.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.085 4.085 3 C -0.326 4.326 4 C -0.165 4.165 5 C -0.185 4.185 6 C -0.254 4.254 7 C 0.088 3.912 8 H 0.076 0.924 9 C -0.177 4.177 10 C -0.157 4.157 11 C -0.183 4.183 12 C 0.164 3.836 13 H 0.032 0.968 14 C -0.563 4.563 15 H 0.083 0.917 16 C -0.128 4.128 17 N -0.492 5.492 18 Si 0.718 3.282 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.209 1.209 22 O -0.267 6.267 23 S 0.409 5.591 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.147 0.853 30 H 0.150 0.850 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.999 -10.258 4.505 12.268 hybrid contribution -0.397 0.687 1.024 1.296 sum 4.602 -9.571 5.529 11.973 Atomic orbital electron populations 1.21797 0.94695 1.01372 1.02750 1.19981 0.95933 0.90204 1.02425 1.24575 1.10031 1.00802 0.97182 1.19861 1.03791 0.94240 0.98649 1.19890 1.05653 0.97329 0.95620 1.24482 1.05538 0.99287 0.96071 1.20161 0.89820 0.89401 0.91843 0.92386 1.22179 0.96708 0.98382 1.00474 1.21617 0.98731 0.96562 0.98825 1.22270 0.98384 1.00694 0.96913 1.19742 0.88807 0.82046 0.93003 0.96765 1.21019 0.91547 1.49394 0.94369 0.91700 1.25074 0.98348 0.93794 0.95561 1.70047 1.12159 1.46153 1.20889 0.86579 0.80847 0.77886 0.82931 1.19584 1.20816 1.20902 1.88414 1.56666 1.40147 1.41506 1.84410 1.63418 1.03344 1.07889 0.92414 0.92246 0.92527 0.91267 0.90715 0.85305 0.84978 0.91736 0.92327 0.92886 0.92538 0.92328 0.92468 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.90 37.16 0.37 -1.32 16 2 C -0.05 -0.55 6.43 -27.88 -0.18 -0.73 16 3 C -0.21 -3.18 5.76 -36.00 -0.21 -3.39 16 4 C -0.13 -2.04 10.05 -41.21 -0.41 -2.46 16 5 C -0.16 -2.63 10.04 -41.21 -0.41 -3.05 16 6 C -0.14 -2.63 5.48 -36.00 -0.20 -2.83 16 7 C 0.15 3.12 3.08 -27.84 -0.09 3.03 16 8 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 9 C -0.14 -2.49 5.40 -26.60 -0.14 -2.63 16 10 C -0.12 -2.12 6.03 -26.55 -0.16 -2.28 16 11 C -0.14 -3.06 5.35 -26.59 -0.14 -3.20 16 12 C 0.22 5.65 2.50 -27.84 -0.07 5.58 16 13 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 14 C -0.53 -14.79 8.80 -34.44 -0.30 -15.09 16 15 H 0.06 1.78 7.74 -52.49 -0.41 1.37 16 16 C 0.08 2.23 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -25.43 12.84 55.43 0.71 -24.72 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 O -0.35 -8.97 9.24 -35.23 -0.33 -9.29 16 23 S 0.14 2.62 23.11 -107.50 -2.48 0.14 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.13 1.61 8.06 -52.49 -0.42 1.19 16 30 H 0.13 2.00 8.06 -52.49 -0.42 1.57 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -30.33 318.27 -10.25 -40.58 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -5.88 Total: -1.74 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -2.04 Total: -26.22 kcal Atomic # 7 Polarization: -25.43 SS G_CDS: 0.71 Total: -24.72 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.33 Total: -9.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -2.48 Total: 0.14 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.33 -10.25 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390549585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.728 kcal (2) G-P(sol) polarization free energy of solvation -30.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds