Wall clock time and date at job start Mon Mar 30 2020 06:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50698 * 109.47417 * 2 1 4 4 C 1.33392 * 125.20109 * 89.99886 * 3 2 1 5 5 C 1.38426 * 114.91558 * 179.79425 * 4 3 2 6 6 C 1.33384 * 114.92332 * 0.42808 * 5 4 3 7 7 C 1.50703 * 125.20244 * 179.86199 * 6 5 4 8 8 H 1.08997 * 109.48025 * 339.69651 * 7 6 5 9 9 C 1.53084 * 109.48277 * 99.72103 * 7 6 5 10 10 C 1.53174 * 109.16456 * 177.60348 * 9 7 6 11 11 C 1.53176 * 109.03724 * 303.01556 * 10 9 7 12 12 C 1.53091 * 109.21206 * 56.94941 * 11 10 9 13 13 H 1.08998 * 109.48266 * 62.40567 * 12 11 10 14 14 C 1.50699 * 109.48010 * 182.43847 * 12 11 10 15 15 H 1.07997 * 120.00019 * 0.02562 * 14 12 11 16 16 C 1.37880 * 119.99807 * 179.97438 * 14 12 11 17 17 N 1.31515 * 120.00303 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99802 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47270 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47167 * 120.00296 * 18 16 14 21 21 H 1.48502 * 109.47085 * 240.00350 * 18 16 14 22 22 O 1.42906 * 109.48695 * 219.66731 * 7 6 5 23 23 S 1.75881 * 125.20113 * 270.02671 * 3 2 1 24 24 H 1.08997 * 109.47175 * 300.00669 * 1 2 3 25 25 H 1.09006 * 109.46917 * 60.00028 * 1 2 3 26 26 H 1.08994 * 109.47715 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46828 * 240.00016 * 2 1 3 28 28 H 1.09000 * 109.46501 * 119.99970 * 2 1 3 29 29 H 1.07995 * 122.54098 * 0.02562 * 4 3 2 30 30 H 1.08002 * 122.53525 * 180.27490 * 5 4 3 31 31 H 1.09007 * 109.52269 * 57.69476 * 9 7 6 32 32 H 1.09000 * 109.57238 * 297.54246 * 9 7 6 33 33 H 1.09004 * 109.54572 * 183.15149 * 10 9 7 34 34 H 1.08995 * 109.54814 * 62.88826 * 10 9 7 35 35 H 1.09002 * 109.52410 * 176.88783 * 11 10 9 36 36 H 1.09004 * 109.52533 * 297.01429 * 11 10 9 37 37 H 0.96997 * 120.00102 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2888 2.1457 1.0900 5 6 2.7471 3.4283 0.8428 6 6 2.8544 3.7479 -0.4477 7 6 3.3251 5.0781 -0.9770 8 1 3.2201 5.8360 -0.2007 9 6 4.7950 4.9716 -1.3911 10 6 5.2488 6.3095 -1.9832 11 6 4.3377 6.6694 -3.1608 12 6 2.8849 6.7098 -2.6799 13 1 2.7731 7.4892 -1.9261 14 6 1.9774 7.0045 -3.8463 15 1 2.3944 7.1482 -4.8321 16 6 0.6146 7.0896 -3.6551 17 7 0.1067 6.9142 -2.4547 18 14 -0.5104 7.4542 -5.1011 19 1 0.3025 7.6082 -6.3342 20 1 -1.4690 6.3338 -5.2773 21 1 -1.2592 8.7101 -4.8413 22 8 2.5374 5.4455 -2.1114 23 16 2.3698 2.3769 -1.4372 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8932 -0.5138 0.8900 29 1 2.1527 1.7599 2.0895 30 1 2.9964 4.1188 1.6350 31 1 4.9070 4.1859 -2.1383 32 1 5.4038 4.7341 -0.5188 33 1 6.2781 6.2238 -2.3315 34 1 5.1838 7.0862 -1.2213 35 1 4.6188 7.6466 -3.5535 36 1 4.4413 5.9185 -3.9443 37 1 -0.8520 6.9745 -2.3201 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390549585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:54 Heat of formation + Delta-G solvation = -52.931100 kcal Electronic energy + Delta-G solvation = -18184.599519 eV Core-core repulsion = 15437.946262 eV Total energy + Delta-G solvation = -2746.653257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13656 -38.70273 -35.27627 -34.51381 -34.13086 -32.26341 -29.31761 -27.39788 -25.82031 -24.13187 -23.38975 -22.91954 -21.00076 -19.73807 -18.62782 -17.98676 -16.74994 -16.40221 -16.23648 -15.95773 -15.32784 -15.12172 -14.82492 -14.70439 -14.31223 -13.94634 -13.72030 -13.18154 -13.07322 -12.91830 -12.76951 -12.64496 -12.53976 -12.31877 -12.11816 -11.96081 -11.85044 -11.73420 -11.46900 -11.34456 -10.89274 -10.59390 -9.86025 -9.32313 -9.25790 -8.16186 -6.36501 0.13496 0.78077 1.26308 1.38038 1.39931 1.52003 1.86749 2.39043 2.99800 3.50748 3.88447 3.98001 4.06101 4.10372 4.22788 4.38616 4.42694 4.45139 4.47596 4.56056 4.69340 4.84092 4.90579 4.93625 4.99808 5.03792 5.06524 5.14009 5.17448 5.25677 5.34000 5.35614 5.44150 5.54929 5.71021 5.76261 6.19204 6.65442 7.15626 7.39479 8.91437 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.006716 C = 0.005299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.817461 B = 4168.159547 C = 5282.754088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.047 4.047 3 C -0.186 4.186 4 C -0.142 4.142 5 C -0.143 4.143 6 C -0.174 4.174 7 C 0.143 3.857 8 H 0.044 0.956 9 C -0.130 4.130 10 C -0.114 4.114 11 C -0.137 4.137 12 C 0.215 3.785 13 H -0.019 1.019 14 C -0.550 4.550 15 H 0.065 0.935 16 C 0.026 3.974 17 N -0.895 5.895 18 Si 0.959 3.041 19 H -0.261 1.261 20 H -0.282 1.282 21 H -0.274 1.274 22 O -0.377 6.377 23 S 0.086 5.914 24 H 0.056 0.944 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.165 0.835 30 H 0.149 0.851 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -11.384 6.856 14.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 C -0.304 4.304 4 C -0.171 4.171 5 C -0.173 4.173 6 C -0.291 4.291 7 C 0.083 3.917 8 H 0.062 0.938 9 C -0.168 4.168 10 C -0.151 4.151 11 C -0.175 4.175 12 C 0.160 3.840 13 H -0.001 1.001 14 C -0.587 4.587 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.532 5.532 18 Si 0.783 3.217 19 H -0.185 1.185 20 H -0.208 1.208 21 H -0.199 1.199 22 O -0.297 6.297 23 S 0.351 5.649 24 H 0.075 0.925 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.095 0.905 28 H 0.123 0.877 29 H 0.183 0.817 30 H 0.167 0.833 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 5.664 -11.755 5.315 14.089 hybrid contribution -0.600 1.088 0.877 1.521 sum 5.064 -10.666 6.193 13.333 Atomic orbital electron populations 1.21792 0.94297 1.02796 1.01593 1.20171 0.96124 0.88078 1.04257 1.25012 1.08317 1.01895 0.95175 1.20199 1.03318 0.93380 1.00238 1.20260 1.03652 0.98400 0.95033 1.24391 1.08698 0.98976 0.97060 1.20308 0.91368 0.90033 0.89972 0.93779 1.22102 0.94916 0.98318 1.01448 1.21604 0.99571 0.96490 0.97452 1.22120 0.96249 1.01007 0.98151 1.19607 0.91330 0.81469 0.91610 1.00142 1.21448 0.92548 1.49537 0.95137 0.91694 1.25927 0.99963 0.93557 0.98254 1.70185 1.12349 1.47584 1.23041 0.85515 0.78646 0.77789 0.79736 1.18523 1.20807 1.19936 1.88299 1.58623 1.39465 1.43351 1.84516 1.64856 1.04688 1.10808 0.92531 0.94454 0.89861 0.90530 0.87697 0.81748 0.83326 0.92254 0.89410 0.89439 0.92039 0.91609 0.93086 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 9.90 71.98 0.71 -2.29 16 2 C -0.05 -0.98 6.43 29.85 0.19 -0.79 16 3 C -0.19 -5.36 5.76 24.59 0.14 -5.22 16 4 C -0.14 -3.94 10.05 21.22 0.21 -3.73 16 5 C -0.14 -4.68 10.04 21.22 0.21 -4.46 16 6 C -0.17 -6.79 5.48 24.59 0.13 -6.65 16 7 C 0.14 6.16 3.08 29.88 0.09 6.25 16 8 H 0.04 1.96 8.12 -2.39 -0.02 1.94 16 9 C -0.13 -4.55 5.40 30.68 0.17 -4.38 16 10 C -0.11 -3.87 6.03 30.71 0.19 -3.69 16 11 C -0.14 -5.85 5.35 30.68 0.16 -5.69 16 12 C 0.22 11.54 2.50 29.88 0.07 11.62 16 13 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 14 C -0.55 -31.88 8.80 25.60 0.23 -31.66 16 15 H 0.06 3.64 7.74 -2.91 -0.02 3.62 16 16 C 0.03 1.49 5.40 84.66 0.46 1.95 16 17 N -0.89 -55.04 12.84 21.45 0.28 -54.76 16 18 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 20 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 O -0.38 -20.27 9.24 -148.98 -1.38 -21.65 16 23 S 0.09 3.19 23.11 -56.49 -1.31 1.88 16 24 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.04 0.92 8.14 -2.38 -0.02 0.90 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.17 3.41 8.06 -2.91 -0.02 3.39 16 30 H 0.15 4.24 8.06 -2.91 -0.02 4.22 16 31 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 33 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 36 H 0.05 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -68.30 318.27 3.62 -64.68 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 1.03 Total: 11.54 kcal Atomic # 6 Polarization: -51.71 SS G_CDS: 2.97 Total: -48.74 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.28 Total: -54.76 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.38 Total: -21.65 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.88 kcal Total: -68.30 3.62 -64.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390549585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.751 kcal (2) G-P(sol) polarization free energy of solvation -68.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds