Wall clock time and date at job start Mon Mar 30 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 C 1.53003 * 109.47206 * 119.99800 * 2 1 3 5 5 C 1.50699 * 109.87133 * 184.31665 * 4 2 1 6 6 C 1.33388 * 125.19981 * 121.14870 * 5 4 2 7 7 C 1.38429 * 114.91931 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.91782 * 0.02562 * 7 6 5 9 9 S 1.75881 * 125.20363 * 301.39571 * 5 4 2 10 10 C 1.54107 * 110.00431 * 63.23004 * 4 2 1 11 11 C 1.54802 * 104.18999 * 242.53766 * 10 4 2 12 12 C 1.54996 * 102.09442 * 20.87919 * 11 10 4 13 13 H 1.08998 * 110.61821 * 81.47617 * 12 11 10 14 14 C 1.50701 * 110.62209 * 204.47888 * 12 11 10 15 15 H 1.08000 * 119.99817 * 355.51898 * 14 12 11 16 16 C 1.37878 * 120.00212 * 175.52463 * 14 12 11 17 17 N 1.31512 * 119.99724 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99963 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47256 * 89.99688 * 18 16 14 20 20 H 1.48502 * 109.47223 * 209.99920 * 18 16 14 21 21 H 1.48503 * 109.47334 * 329.99973 * 18 16 14 22 22 O 1.43743 * 109.87690 * 305.32646 * 4 2 1 23 23 H 1.09001 * 109.46934 * 306.20305 * 1 2 3 24 24 H 1.08996 * 109.47353 * 66.20163 * 1 2 3 25 25 H 1.09002 * 109.47035 * 186.20583 * 1 2 3 26 26 H 1.08996 * 109.46904 * 239.99597 * 2 1 3 27 27 H 1.08998 * 109.47546 * 65.63737 * 3 2 1 28 28 H 1.08998 * 109.47013 * 185.63837 * 3 2 1 29 29 H 1.09001 * 109.46754 * 305.63492 * 3 2 1 30 30 H 1.07998 * 122.54231 * 359.94878 * 6 5 4 31 31 H 1.07999 * 122.53796 * 179.97438 * 7 6 5 32 32 H 1.08000 * 125.19786 * 179.97438 * 8 7 6 33 33 H 1.09008 * 110.48377 * 1.21577 * 10 4 2 34 34 H 1.08997 * 110.48656 * 123.85774 * 10 4 2 35 35 H 1.09005 * 110.91074 * 262.68214 * 11 10 4 36 36 H 1.08998 * 110.93834 * 139.09167 * 11 10 4 37 37 H 0.97002 * 119.99439 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5432 -0.6348 1.3129 6 6 4.2405 -0.0910 2.3115 7 6 5.6149 -0.1266 2.1503 8 6 6.0336 -0.6988 1.0204 9 16 4.6462 -1.2298 0.0788 10 6 1.6009 -2.1981 1.2216 11 6 0.6891 -2.3462 2.4639 12 6 0.2738 -0.8784 2.7387 13 1 -0.5482 -0.5836 2.0865 14 6 -0.1036 -0.6958 4.1862 15 1 -0.1291 -1.5479 4.8493 16 6 -0.4165 0.5591 4.6641 17 7 -0.3851 1.5968 3.8567 18 14 -0.8850 0.7853 6.4581 19 1 0.3362 1.0570 7.2582 20 1 -1.8239 1.9289 6.5842 21 1 -1.5397 -0.4501 6.9584 22 8 1.4660 -0.1267 2.4254 23 1 -0.3633 0.6070 0.8293 24 1 -0.3634 0.4147 -0.9402 25 1 -0.3633 -1.0217 0.1111 26 1 1.8933 -0.5139 -0.8899 27 1 1.7615 1.9264 0.9361 28 1 3.1253 1.4441 -0.1010 29 1 1.5966 1.9846 -0.8353 30 1 3.7686 0.3443 3.1799 31 1 6.2965 0.2789 2.8833 32 1 7.0664 -0.8146 0.7268 33 1 1.0423 -2.4130 0.3105 34 1 2.4667 -2.8552 1.3033 35 1 1.2441 -2.7578 3.3070 36 1 -0.1819 -2.9609 2.2367 37 1 -0.6056 2.4796 4.1929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390682411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:44 Heat of formation + Delta-G solvation = -18.275713 kcal Electronic energy + Delta-G solvation = -19215.285615 eV Core-core repulsion = 16470.135128 eV Total energy + Delta-G solvation = -2745.150487 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.42273 -36.91547 -34.00855 -32.34171 -30.96808 -30.06610 -27.38968 -26.39485 -24.90403 -22.97733 -21.56264 -20.24056 -19.23856 -18.54179 -17.04392 -16.19714 -15.47925 -15.18210 -14.50914 -14.04434 -13.76427 -13.58027 -12.85480 -12.51158 -12.31821 -12.20158 -11.89986 -11.79716 -11.65198 -11.27191 -11.20692 -10.94392 -10.73988 -10.61195 -10.50876 -10.48982 -10.14434 -10.09398 -9.93088 -9.60788 -9.05710 -8.61264 -8.19254 -8.07324 -7.88502 -6.02791 -4.13960 1.42234 1.98311 2.37731 3.24347 3.30339 3.37171 3.39581 4.41383 4.96374 5.15432 5.29354 5.37323 5.45881 5.59830 5.74434 5.81150 5.87311 5.91069 6.08574 6.22388 6.27287 6.29555 6.40043 6.51285 6.55647 6.60847 6.64186 6.77601 6.79410 6.82045 6.95916 6.99204 7.02996 7.15681 7.56014 7.88643 8.23829 8.56517 8.96912 9.55756 11.04456 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.007232 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.823669 B = 3870.924423 C = 4241.163714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.093 4.093 3 C -0.139 4.139 4 C 0.168 3.832 5 C -0.134 4.134 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.233 4.233 9 S 0.067 5.933 10 C -0.146 4.146 11 C -0.147 4.147 12 C 0.202 3.798 13 H 0.043 0.957 14 C -0.530 4.530 15 H 0.062 0.938 16 C 0.080 3.920 17 N -0.860 5.860 18 Si 0.889 3.111 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.328 6.328 23 H 0.087 0.913 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.042 0.958 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.156 0.844 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.593 -3.806 -7.740 11.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.196 4.196 4 C 0.124 3.876 5 C -0.251 4.251 6 C -0.160 4.160 7 C -0.156 4.156 8 C -0.368 4.368 9 S 0.329 5.671 10 C -0.184 4.184 11 C -0.185 4.185 12 C 0.147 3.853 13 H 0.061 0.939 14 C -0.568 4.568 15 H 0.081 0.919 16 C -0.126 4.126 17 N -0.496 5.496 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 O -0.247 6.247 23 H 0.106 0.894 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.168 0.832 31 H 0.152 0.848 32 H 0.174 0.826 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.487 -4.141 -9.028 12.439 hybrid contribution 0.111 0.704 2.187 2.300 sum 7.599 -3.437 -6.842 10.787 Atomic orbital electron populations 1.22067 0.94585 1.02085 1.02078 1.21467 0.96698 0.96941 0.96074 1.21728 0.99595 0.95818 1.02460 1.20265 0.85354 0.92023 0.89914 1.24603 0.98825 1.04371 0.97271 1.20233 0.92443 1.02235 1.01083 1.20241 0.95888 1.01591 0.97899 1.25432 1.01548 1.09714 1.00122 1.83941 0.97149 1.61748 1.24294 1.23054 0.99836 0.95835 0.99644 1.23210 0.97922 1.01540 0.95864 1.20989 0.84673 0.83352 0.96301 0.93938 1.21008 1.47126 0.94010 0.94624 0.91943 1.25025 0.94106 0.96074 0.97433 1.70013 1.45801 0.99053 1.34705 0.86665 0.78376 0.77788 0.85552 1.20576 1.21165 1.19830 1.89287 1.41270 1.54652 1.39474 0.89427 0.94036 0.93029 0.92547 0.90688 0.93739 0.93886 0.83187 0.84836 0.82610 0.91457 0.91993 0.91818 0.92279 0.92975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 7.44 37.16 0.28 -2.51 16 2 C -0.09 -1.68 2.12 -90.62 -0.19 -1.87 16 3 C -0.14 -2.52 8.72 37.16 0.32 -2.20 16 4 C 0.17 3.31 0.76 -91.19 -0.07 3.24 16 5 C -0.13 -2.46 3.53 -36.00 -0.13 -2.58 16 6 C -0.13 -2.44 9.60 -41.21 -0.40 -2.84 16 7 C -0.12 -1.92 10.18 -41.21 -0.42 -2.34 16 8 C -0.23 -3.26 11.23 29.04 0.33 -2.93 16 9 S 0.07 1.00 23.18 -107.50 -2.49 -1.49 16 10 C -0.15 -2.68 5.66 -25.20 -0.14 -2.82 16 11 C -0.15 -3.05 6.55 -24.73 -0.16 -3.22 16 12 C 0.20 4.95 2.36 -26.83 -0.06 4.89 16 13 H 0.04 1.09 5.03 -51.93 -0.26 0.83 16 14 C -0.53 -14.45 8.83 -34.44 -0.30 -14.75 16 15 H 0.06 1.68 7.78 -52.49 -0.41 1.27 16 16 C 0.08 2.18 5.42 -17.82 -0.10 2.09 16 17 N -0.86 -24.36 12.94 55.43 0.72 -23.64 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 20 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 22 O -0.33 -7.96 8.38 -35.23 -0.30 -8.26 16 23 H 0.09 1.93 6.38 -51.93 -0.33 1.60 16 24 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.91 6.06 -51.93 -0.31 0.60 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.60 7.71 -51.93 -0.40 1.20 16 28 H 0.04 0.77 7.34 -51.93 -0.38 0.39 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.15 3.13 7.56 -52.49 -0.40 2.73 16 31 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 32 H 0.16 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.07 1.12 6.69 -51.92 -0.35 0.77 16 34 H 0.06 1.08 7.66 -51.93 -0.40 0.68 16 35 H 0.06 1.35 8.05 -51.93 -0.42 0.93 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 305.03 15.07 4.60 4.60 Total: -1.00 -28.22 305.03 -8.87 -37.09 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -5.33 Total: 3.54 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: -1.05 Total: -27.84 kcal Atomic # 7 Polarization: -24.36 SS G_CDS: 0.72 Total: -23.64 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -0.30 Total: -8.26 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.00 SS G_CDS: -2.49 Total: -1.49 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.22 -8.87 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390682411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.809 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds