Wall clock time and date at job start Mon Mar 30 2020 06:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47147 * 2 1 4 4 C 1.53003 * 109.47206 * 119.99800 * 2 1 3 5 5 C 1.50699 * 109.87133 * 184.31665 * 4 2 1 6 6 C 1.33388 * 125.19981 * 121.14870 * 5 4 2 7 7 C 1.38429 * 114.91931 * 179.97438 * 6 5 4 8 8 C 1.33389 * 114.91782 * 0.02562 * 7 6 5 9 9 S 1.75881 * 125.20363 * 301.39571 * 5 4 2 10 10 C 1.54107 * 110.00431 * 63.23004 * 4 2 1 11 11 C 1.54802 * 104.18999 * 242.53766 * 10 4 2 12 12 C 1.54996 * 102.09442 * 20.87919 * 11 10 4 13 13 H 1.08998 * 110.61821 * 81.47617 * 12 11 10 14 14 C 1.50701 * 110.62209 * 204.47888 * 12 11 10 15 15 H 1.08000 * 119.99817 * 355.51898 * 14 12 11 16 16 C 1.37878 * 120.00212 * 175.52463 * 14 12 11 17 17 N 1.31512 * 119.99724 * 359.97438 * 16 14 12 18 18 Si 1.86797 * 119.99963 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47256 * 89.99688 * 18 16 14 20 20 H 1.48502 * 109.47223 * 209.99920 * 18 16 14 21 21 H 1.48503 * 109.47334 * 329.99973 * 18 16 14 22 22 O 1.43743 * 109.87690 * 305.32646 * 4 2 1 23 23 H 1.09001 * 109.46934 * 306.20305 * 1 2 3 24 24 H 1.08996 * 109.47353 * 66.20163 * 1 2 3 25 25 H 1.09002 * 109.47035 * 186.20583 * 1 2 3 26 26 H 1.08996 * 109.46904 * 239.99597 * 2 1 3 27 27 H 1.08998 * 109.47546 * 65.63737 * 3 2 1 28 28 H 1.08998 * 109.47013 * 185.63837 * 3 2 1 29 29 H 1.09001 * 109.46754 * 305.63492 * 3 2 1 30 30 H 1.07998 * 122.54231 * 359.94878 * 6 5 4 31 31 H 1.07999 * 122.53796 * 179.97438 * 7 6 5 32 32 H 1.08000 * 125.19786 * 179.97438 * 8 7 6 33 33 H 1.09008 * 110.48377 * 1.21577 * 10 4 2 34 34 H 1.08997 * 110.48656 * 123.85774 * 10 4 2 35 35 H 1.09005 * 110.91074 * 262.68214 * 11 10 4 36 36 H 1.08998 * 110.93834 * 139.09167 * 11 10 4 37 37 H 0.97002 * 119.99439 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5432 -0.6348 1.3129 6 6 4.2405 -0.0910 2.3115 7 6 5.6149 -0.1266 2.1503 8 6 6.0336 -0.6988 1.0204 9 16 4.6462 -1.2298 0.0788 10 6 1.6009 -2.1981 1.2216 11 6 0.6891 -2.3462 2.4639 12 6 0.2738 -0.8784 2.7387 13 1 -0.5482 -0.5836 2.0865 14 6 -0.1036 -0.6958 4.1862 15 1 -0.1291 -1.5479 4.8493 16 6 -0.4165 0.5591 4.6641 17 7 -0.3851 1.5968 3.8567 18 14 -0.8850 0.7853 6.4581 19 1 0.3362 1.0570 7.2582 20 1 -1.8239 1.9289 6.5842 21 1 -1.5397 -0.4501 6.9584 22 8 1.4660 -0.1267 2.4254 23 1 -0.3633 0.6070 0.8293 24 1 -0.3634 0.4147 -0.9402 25 1 -0.3633 -1.0217 0.1111 26 1 1.8933 -0.5139 -0.8899 27 1 1.7615 1.9264 0.9361 28 1 3.1253 1.4441 -0.1010 29 1 1.5966 1.9846 -0.8353 30 1 3.7686 0.3443 3.1799 31 1 6.2965 0.2789 2.8833 32 1 7.0664 -0.8146 0.7268 33 1 1.0423 -2.4130 0.3105 34 1 2.4667 -2.8552 1.3033 35 1 1.2441 -2.7578 3.3070 36 1 -0.1819 -2.9609 2.2367 37 1 -0.6056 2.4796 4.1929 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390682411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:44 Heat of formation + Delta-G solvation = -32.994454 kcal Electronic energy + Delta-G solvation = -19215.923867 eV Core-core repulsion = 16470.135128 eV Total energy + Delta-G solvation = -2745.788739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.00441 -38.24089 -35.67183 -34.30531 -32.63831 -31.53165 -29.07411 -27.86984 -26.63565 -24.40427 -23.14449 -21.94032 -20.70839 -19.87896 -18.80466 -17.84179 -17.10310 -16.56546 -16.37262 -15.53081 -15.35632 -15.13762 -14.36675 -14.16642 -13.81773 -13.65256 -13.52127 -13.30078 -13.00226 -12.89777 -12.82379 -12.70989 -12.40210 -12.25350 -12.15305 -12.00247 -11.83774 -11.59780 -11.44733 -11.22372 -10.90368 -10.67676 -9.80199 -9.38260 -9.25874 -8.11554 -6.29518 0.17282 0.73935 1.14451 1.39613 1.40918 1.50523 1.93881 2.41616 3.10716 3.61178 3.71387 3.92641 4.05649 4.22714 4.28716 4.32458 4.39943 4.61173 4.71911 4.76848 4.82286 4.84779 4.89383 4.99792 5.01463 5.05125 5.14189 5.18838 5.31486 5.36092 5.47112 5.52642 5.58893 5.67706 5.69805 5.84977 6.24460 6.64235 7.03943 7.43939 8.95069 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022506 B = 0.007232 C = 0.006600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.823669 B = 3870.924423 C = 4241.163714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 C -0.129 4.129 4 C 0.158 3.842 5 C -0.165 4.165 6 C -0.149 4.149 7 C -0.142 4.142 8 C -0.213 4.213 9 S 0.116 5.884 10 C -0.136 4.136 11 C -0.143 4.143 12 C 0.197 3.803 13 H 0.027 0.973 14 C -0.554 4.554 15 H 0.058 0.942 16 C 0.031 3.969 17 N -0.890 5.890 18 Si 0.951 3.049 19 H -0.281 1.281 20 H -0.280 1.280 21 H -0.264 1.264 22 O -0.358 6.358 23 H 0.042 0.958 24 H 0.066 0.934 25 H 0.056 0.944 26 H 0.085 0.915 27 H 0.031 0.969 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.110 0.890 31 H 0.153 0.847 32 H 0.196 0.804 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.198 -5.068 -9.412 14.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.186 4.186 4 C 0.115 3.885 5 C -0.282 4.282 6 C -0.178 4.178 7 C -0.172 4.172 8 C -0.348 4.348 9 S 0.378 5.622 10 C -0.174 4.174 11 C -0.181 4.181 12 C 0.142 3.858 13 H 0.044 0.956 14 C -0.592 4.592 15 H 0.076 0.924 16 C -0.172 4.172 17 N -0.527 5.527 18 Si 0.776 3.224 19 H -0.207 1.207 20 H -0.206 1.206 21 H -0.189 1.189 22 O -0.277 6.277 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.075 0.925 26 H 0.104 0.896 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.128 0.872 31 H 0.171 0.829 32 H 0.213 0.787 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.091 -5.417 -10.702 15.050 hybrid contribution -0.322 1.085 2.648 2.880 sum 8.769 -4.332 -8.054 12.670 Atomic orbital electron populations 1.21946 0.94985 1.01662 1.01463 1.21494 0.96289 0.96812 0.96401 1.21611 1.00105 0.96013 1.00907 1.20498 0.86461 0.92640 0.88885 1.24578 0.98684 1.05784 0.99144 1.20175 0.94326 1.03042 1.00285 1.20300 0.94490 1.02936 0.99474 1.25913 1.03104 1.07090 0.98721 1.83684 0.95847 1.60512 1.22132 1.23029 0.99942 0.95185 0.99256 1.23100 0.98954 0.99212 0.96791 1.20836 0.84752 0.85681 0.94572 0.95595 1.21416 1.47369 0.94063 0.96308 0.92420 1.25777 0.94172 0.95860 1.01388 1.70151 1.46886 0.99252 1.36369 0.85690 0.77981 0.78028 0.80696 1.20671 1.20570 1.18869 1.89209 1.41093 1.55604 1.41839 0.93904 0.91528 0.92498 0.89648 0.95015 0.93066 0.91841 0.87186 0.82905 0.78735 0.89153 0.90734 0.93005 0.90621 0.93182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.24 7.44 71.98 0.54 -4.71 16 2 C -0.09 -3.20 2.12 -10.79 -0.02 -3.23 16 3 C -0.13 -4.68 8.72 71.98 0.63 -4.05 16 4 C 0.16 6.20 0.76 -11.16 -0.01 6.19 16 5 C -0.17 -5.93 3.53 24.59 0.09 -5.84 16 6 C -0.15 -5.61 9.60 21.22 0.20 -5.41 16 7 C -0.14 -4.12 10.18 21.22 0.22 -3.91 16 8 C -0.21 -5.16 11.23 66.72 0.75 -4.41 16 9 S 0.12 3.09 23.18 -56.49 -1.31 1.78 16 10 C -0.14 -4.82 5.66 31.58 0.18 -4.64 16 11 C -0.14 -5.93 6.55 31.89 0.21 -5.72 16 12 C 0.20 10.03 2.36 30.53 0.07 10.10 16 13 H 0.03 1.41 5.03 -2.39 -0.01 1.40 16 14 C -0.55 -31.38 8.83 25.60 0.23 -31.15 16 15 H 0.06 3.21 7.78 -2.91 -0.02 3.18 16 16 C 0.03 1.75 5.42 84.66 0.46 2.21 16 17 N -0.89 -52.81 12.94 21.45 0.28 -52.53 16 18 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 22 O -0.36 -18.18 8.38 -148.98 -1.25 -19.43 16 23 H 0.04 1.96 6.38 -2.39 -0.02 1.94 16 24 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.97 6.06 -2.39 -0.01 1.96 16 26 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 27 H 0.03 1.40 7.71 -2.39 -0.02 1.38 16 28 H 0.05 1.74 7.34 -2.39 -0.02 1.73 16 29 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.11 4.96 7.56 -2.91 -0.02 4.94 16 31 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 32 H 0.20 3.18 8.06 -2.91 -0.02 3.16 16 33 H 0.09 2.75 6.69 -2.38 -0.02 2.74 16 34 H 0.07 2.43 7.66 -2.39 -0.02 2.42 16 35 H 0.05 2.23 8.05 -2.38 -0.02 2.21 16 36 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 37 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -64.17 305.03 4.33 -59.84 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 1.05 Total: 18.41 kcal Atomic # 6 Polarization: -58.08 SS G_CDS: 3.53 Total: -54.55 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.28 Total: -52.53 kcal Atomic # 8 Polarization: -18.18 SS G_CDS: -1.25 Total: -19.43 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.31 Total: 1.78 kcal Total: -64.17 4.33 -59.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390682411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.850 kcal (2) G-P(sol) polarization free energy of solvation -64.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds