Wall clock time and date at job start Mon Mar 30 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52999 * 109.46927 * 120.00236 * 2 1 3 5 5 C 1.50696 * 109.82306 * 59.11527 * 4 2 1 6 6 C 1.33391 * 125.20072 * 209.90407 * 5 4 2 7 7 C 1.38421 * 114.92202 * 179.85580 * 6 5 4 8 8 C 1.33389 * 114.92095 * 0.43229 * 7 6 5 9 9 S 1.75880 * 125.20600 * 30.20461 * 5 4 2 10 10 C 1.54385 * 109.82970 * 180.02562 * 4 2 1 11 11 C 1.55301 * 102.25246 * 98.15558 * 10 4 2 12 12 C 1.54941 * 100.94436 * 34.13203 * 11 10 4 13 13 H 1.09003 * 110.30495 * 82.56843 * 12 11 10 14 14 C 1.50694 * 110.31063 * 204.63953 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 O 1.43234 * 109.83077 * 298.13076 * 4 2 1 23 23 H 1.09001 * 109.47457 * 300.00086 * 1 2 3 24 24 H 1.09001 * 109.46863 * 59.99802 * 1 2 3 25 25 H 1.08995 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47045 * 240.00221 * 2 1 3 27 27 H 1.08999 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47425 * 299.99853 * 3 2 1 29 29 H 1.09004 * 109.46992 * 60.00189 * 3 2 1 30 30 H 1.07997 * 122.53963 * 0.02562 * 6 5 4 31 31 H 1.08000 * 122.54247 * 180.20062 * 7 6 5 32 32 H 1.07995 * 125.20515 * 179.78731 * 8 7 6 33 33 H 1.09003 * 110.84326 * 339.96575 * 10 4 2 34 34 H 1.08997 * 111.02167 * 216.42964 * 10 4 2 35 35 H 1.09004 * 111.12543 * 276.21098 * 11 10 4 36 36 H 1.09005 * 111.16048 * 152.07256 * 11 10 4 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5242 -2.1371 1.2681 6 6 1.2727 -2.8492 2.3677 7 6 0.8009 -4.1301 2.1379 8 6 0.6779 -4.4614 0.8516 9 16 1.1689 -3.1060 -0.1561 10 6 3.5838 -0.7256 1.2579 11 6 3.9113 0.4667 2.1976 12 6 2.7373 0.3786 3.2049 13 1 2.9537 -0.3627 3.9741 14 6 2.4850 1.7249 3.8332 15 1 3.0920 2.5734 3.5541 16 6 1.4791 1.8734 4.7645 17 7 0.7395 0.8402 5.1040 18 14 1.1668 3.5421 5.5438 19 1 0.0394 3.4365 6.5046 20 1 2.3880 3.9901 6.2602 21 1 0.8244 4.5262 4.4858 22 8 1.6029 -0.0272 2.4235 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.4230 -2.4552 3.3619 31 1 0.5548 -4.8111 2.9392 32 1 0.3297 -5.4157 0.4851 33 1 3.9778 -0.5502 0.2569 34 1 3.9699 -1.6593 1.6668 35 1 3.8929 1.4116 1.6545 36 1 4.8693 0.3223 2.6972 37 1 0.0321 0.9447 5.7594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390682413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:49 Heat of formation + Delta-G solvation = -21.098416 kcal Electronic energy + Delta-G solvation = -19205.318121 eV Core-core repulsion = 16460.045233 eV Total energy + Delta-G solvation = -2745.272888 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.38774 -36.83552 -34.25812 -32.33784 -31.00607 -29.94493 -27.40726 -26.34424 -24.87901 -22.95063 -21.61048 -20.40977 -19.16203 -18.56223 -16.86157 -16.46797 -15.24073 -15.14966 -14.72603 -14.13015 -13.87785 -13.26312 -12.88812 -12.54723 -12.46047 -12.08781 -11.84187 -11.74787 -11.68015 -11.42498 -11.25579 -10.91798 -10.77687 -10.61601 -10.52664 -10.46321 -10.20760 -10.13516 -9.99792 -9.56616 -9.07744 -8.58916 -8.22416 -8.00075 -7.86576 -6.01916 -4.14408 1.45198 2.04648 2.42528 3.26808 3.31605 3.36612 3.38553 4.41482 4.95754 5.14996 5.28570 5.39709 5.41493 5.50479 5.72162 5.81188 5.84969 5.92469 6.11816 6.20167 6.23471 6.27590 6.36848 6.44522 6.50729 6.58249 6.59818 6.68703 6.75787 6.82807 6.96706 6.99443 7.06741 7.11794 7.57625 7.87973 8.25451 8.62369 9.01083 9.56291 11.05161 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.007165 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.076177 B = 3906.699934 C = 4296.107657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.173 3.827 5 C -0.147 4.147 6 C -0.132 4.132 7 C -0.124 4.124 8 C -0.236 4.236 9 S 0.069 5.931 10 C -0.141 4.141 11 C -0.150 4.150 12 C 0.211 3.789 13 H 0.027 0.973 14 C -0.531 4.531 15 H 0.061 0.939 16 C 0.080 3.920 17 N -0.861 5.861 18 Si 0.889 3.111 19 H -0.287 1.287 20 H -0.276 1.276 21 H -0.276 1.276 22 O -0.329 6.329 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.041 0.959 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.060 0.940 37 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.718 -6.631 -9.350 11.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 C -0.202 4.202 4 C 0.129 3.871 5 C -0.264 4.264 6 C -0.160 4.160 7 C -0.156 4.156 8 C -0.371 4.371 9 S 0.331 5.669 10 C -0.180 4.180 11 C -0.188 4.188 12 C 0.156 3.844 13 H 0.045 0.955 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.497 5.497 18 Si 0.716 3.284 19 H -0.212 1.212 20 H -0.202 1.202 21 H -0.201 1.201 22 O -0.249 6.249 23 H 0.088 0.912 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.099 0.901 30 H 0.166 0.834 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.427 -6.446 -10.720 12.590 hybrid contribution -0.227 0.374 1.923 1.973 sum 1.200 -6.072 -8.797 10.756 Atomic orbital electron populations 1.21833 0.94921 1.01685 1.01729 1.21317 0.96704 0.97025 0.95657 1.21904 1.00530 0.95546 1.02266 1.20254 0.91869 0.84799 0.90129 1.25096 1.06336 1.00305 0.94624 1.20222 1.01912 0.93305 1.00579 1.20213 1.02027 0.97095 0.96218 1.25475 1.11813 1.02843 0.96998 1.83947 1.65925 1.05812 1.11190 1.23140 0.94794 0.99750 1.00280 1.23479 1.00474 0.96921 0.97910 1.20518 0.80671 0.95165 0.88045 0.95496 1.21024 1.18252 0.94898 1.22646 0.92039 1.25048 0.95429 0.96364 0.95777 1.70009 1.19250 1.29525 1.30893 0.86735 0.77811 0.84683 0.79181 1.21249 1.20175 1.20105 1.88901 1.32770 1.71997 1.31186 0.91161 0.93842 0.92905 0.92325 0.92874 0.93995 0.90140 0.83447 0.84900 0.82712 0.91526 0.91613 0.90865 0.92115 0.92890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.75 37.16 0.33 -2.24 16 2 C -0.09 -1.55 1.78 -90.62 -0.16 -1.71 16 3 C -0.15 -2.54 7.86 37.16 0.29 -2.25 16 4 C 0.17 3.38 0.68 -91.05 -0.06 3.32 16 5 C -0.15 -2.72 4.26 -36.00 -0.15 -2.87 16 6 C -0.13 -2.50 9.64 -41.21 -0.40 -2.89 16 7 C -0.12 -1.97 10.18 -41.21 -0.42 -2.39 16 8 C -0.24 -3.40 11.23 29.04 0.33 -3.07 16 9 S 0.07 1.05 20.77 -107.50 -2.23 -1.18 16 10 C -0.14 -2.55 5.53 -24.79 -0.14 -2.69 16 11 C -0.15 -3.01 5.92 -24.49 -0.14 -3.15 16 12 C 0.21 5.21 3.22 -26.86 -0.09 5.12 16 13 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 14 C -0.53 -14.30 8.79 -34.44 -0.30 -14.60 16 15 H 0.06 1.61 7.76 -52.49 -0.41 1.21 16 16 C 0.08 2.20 5.43 -17.82 -0.10 2.11 16 17 N -0.86 -24.84 13.05 55.43 0.72 -24.11 16 18 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 O -0.33 -7.99 8.22 -35.23 -0.29 -8.28 16 23 H 0.07 1.45 7.75 -51.93 -0.40 1.05 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.92 6.00 -51.93 -0.31 0.61 16 26 H 0.06 0.94 7.62 -51.93 -0.40 0.54 16 27 H 0.05 0.87 5.49 -51.93 -0.29 0.59 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.67 7.65 -51.93 -0.40 1.27 16 30 H 0.15 3.14 7.91 -52.49 -0.42 2.73 16 31 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.07 1.06 7.40 -51.93 -0.38 0.67 16 34 H 0.07 1.16 7.85 -51.93 -0.41 0.76 16 35 H 0.07 1.44 5.93 -51.93 -0.31 1.13 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 304.52 15.07 4.59 4.59 Total: -1.00 -28.50 304.52 -8.64 -37.14 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -5.39 Total: 3.17 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -1.02 Total: -27.33 kcal Atomic # 7 Polarization: -24.84 SS G_CDS: 0.72 Total: -24.11 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.29 Total: -8.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 16 Polarization: 1.05 SS G_CDS: -2.23 Total: -1.18 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.50 -8.64 -37.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390682413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.039 kcal (2) G-P(sol) polarization free energy of solvation -28.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds