Wall clock time and date at job start Mon Mar 30 2020 06:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52999 * 109.46927 * 120.00236 * 2 1 3 5 5 C 1.50696 * 109.82306 * 59.11527 * 4 2 1 6 6 C 1.33391 * 125.20072 * 209.90407 * 5 4 2 7 7 C 1.38421 * 114.92202 * 179.85580 * 6 5 4 8 8 C 1.33389 * 114.92095 * 0.43229 * 7 6 5 9 9 S 1.75880 * 125.20600 * 30.20461 * 5 4 2 10 10 C 1.54385 * 109.82970 * 180.02562 * 4 2 1 11 11 C 1.55301 * 102.25246 * 98.15558 * 10 4 2 12 12 C 1.54941 * 100.94436 * 34.13203 * 11 10 4 13 13 H 1.09003 * 110.30495 * 82.56843 * 12 11 10 14 14 C 1.50694 * 110.31063 * 204.63953 * 12 11 10 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 12 11 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 12 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 O 1.43234 * 109.83077 * 298.13076 * 4 2 1 23 23 H 1.09001 * 109.47457 * 300.00086 * 1 2 3 24 24 H 1.09001 * 109.46863 * 59.99802 * 1 2 3 25 25 H 1.08995 * 109.47273 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47045 * 240.00221 * 2 1 3 27 27 H 1.08999 * 109.47135 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47425 * 299.99853 * 3 2 1 29 29 H 1.09004 * 109.46992 * 60.00189 * 3 2 1 30 30 H 1.07997 * 122.53963 * 0.02562 * 6 5 4 31 31 H 1.08000 * 122.54247 * 180.20062 * 7 6 5 32 32 H 1.07995 * 125.20515 * 179.78731 * 8 7 6 33 33 H 1.09003 * 110.84326 * 339.96575 * 10 4 2 34 34 H 1.08997 * 111.02167 * 216.42964 * 10 4 2 35 35 H 1.09004 * 111.12543 * 276.21098 * 11 10 4 36 36 H 1.09005 * 111.16048 * 152.07256 * 11 10 4 37 37 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.5242 -2.1371 1.2681 6 6 1.2727 -2.8492 2.3677 7 6 0.8009 -4.1301 2.1379 8 6 0.6779 -4.4614 0.8516 9 16 1.1689 -3.1060 -0.1561 10 6 3.5838 -0.7256 1.2579 11 6 3.9113 0.4667 2.1976 12 6 2.7373 0.3786 3.2049 13 1 2.9537 -0.3627 3.9741 14 6 2.4850 1.7249 3.8332 15 1 3.0920 2.5734 3.5541 16 6 1.4791 1.8734 4.7645 17 7 0.7395 0.8402 5.1040 18 14 1.1668 3.5421 5.5438 19 1 0.0394 3.4365 6.5046 20 1 2.3880 3.9901 6.2602 21 1 0.8244 4.5262 4.4858 22 8 1.6029 -0.0272 2.4235 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.4230 -2.4552 3.3619 31 1 0.5548 -4.8111 2.9392 32 1 0.3297 -5.4157 0.4851 33 1 3.9778 -0.5502 0.2569 34 1 3.9699 -1.6593 1.6668 35 1 3.8929 1.4116 1.6545 36 1 4.8693 0.3223 2.6972 37 1 0.0321 0.9447 5.7594 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390682413.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:49 Heat of formation + Delta-G solvation = -36.281608 kcal Electronic energy + Delta-G solvation = -19205.976514 eV Core-core repulsion = 16460.045233 eV Total energy + Delta-G solvation = -2745.931281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.96735 -38.19686 -35.89426 -34.32373 -32.67272 -31.39673 -29.12458 -27.75002 -26.61557 -24.41157 -23.17109 -22.13179 -20.62095 -19.91650 -18.66048 -18.09674 -16.80247 -16.71203 -16.47978 -15.78720 -15.28534 -14.72100 -14.54561 -14.26506 -13.89424 -13.60765 -13.42039 -13.30046 -13.04801 -12.87313 -12.79174 -12.70969 -12.42497 -12.32112 -12.20591 -11.99957 -11.83251 -11.56526 -11.53593 -11.11396 -10.90831 -10.67557 -9.90286 -9.38463 -9.21826 -8.11891 -6.31148 0.15724 0.77223 1.14434 1.40336 1.42574 1.49649 1.91649 2.41564 3.09157 3.63066 3.70621 3.87843 3.98794 4.23143 4.29155 4.32310 4.43550 4.58627 4.70471 4.75433 4.80262 4.87129 4.89859 4.96305 4.99621 5.07617 5.14311 5.19064 5.28849 5.35041 5.51580 5.54991 5.57422 5.69095 5.72051 5.79448 6.22712 6.66141 7.10567 7.44288 8.95231 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023883 B = 0.007165 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.076177 B = 3906.699934 C = 4296.107657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.086 4.086 3 C -0.140 4.140 4 C 0.160 3.840 5 C -0.177 4.177 6 C -0.151 4.151 7 C -0.143 4.143 8 C -0.217 4.217 9 S 0.123 5.877 10 C -0.132 4.132 11 C -0.141 4.141 12 C 0.209 3.791 13 H -0.016 1.016 14 C -0.545 4.545 15 H 0.064 0.936 16 C 0.026 3.974 17 N -0.900 5.900 18 Si 0.954 3.046 19 H -0.287 1.287 20 H -0.265 1.265 21 H -0.271 1.271 22 O -0.358 6.358 23 H 0.029 0.971 24 H 0.070 0.930 25 H 0.053 0.947 26 H 0.088 0.912 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.105 0.895 31 H 0.151 0.849 32 H 0.195 0.805 33 H 0.099 0.901 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.070 -7.159 -12.160 14.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.105 4.105 3 C -0.197 4.197 4 C 0.118 3.882 5 C -0.294 4.294 6 C -0.181 4.181 7 C -0.174 4.174 8 C -0.352 4.352 9 S 0.386 5.614 10 C -0.170 4.170 11 C -0.179 4.179 12 C 0.153 3.847 13 H 0.002 0.998 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.176 4.176 17 N -0.537 5.537 18 Si 0.779 3.221 19 H -0.212 1.212 20 H -0.190 1.190 21 H -0.196 1.196 22 O -0.278 6.278 23 H 0.048 0.952 24 H 0.089 0.911 25 H 0.072 0.928 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.123 0.877 31 H 0.168 0.832 32 H 0.212 0.788 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 1.795 -6.968 -13.540 15.333 hybrid contribution -0.348 0.448 2.734 2.792 sum 1.447 -6.520 -10.807 12.704 Atomic orbital electron populations 1.21773 0.95284 1.01545 1.01014 1.21362 0.96432 0.97184 0.95542 1.21830 1.01154 0.95246 1.01484 1.20556 0.92991 0.85461 0.89214 1.25086 1.07274 1.00380 0.96670 1.20150 1.03619 0.95236 0.99081 1.20269 1.03100 0.96128 0.97854 1.25951 1.09325 1.03898 0.96059 1.83627 1.64795 1.04605 1.08408 1.23113 0.93846 0.98636 1.01368 1.23349 0.98956 0.98298 0.97261 1.20282 0.82851 0.92939 0.88619 0.99830 1.21430 1.18034 0.95935 1.22869 0.91747 1.25875 0.95341 0.99887 0.96491 1.70171 1.20031 1.31685 1.31828 0.85701 0.77895 0.80270 0.78282 1.21220 1.18968 1.19560 1.88806 1.32962 1.73041 1.32965 0.95208 0.91096 0.92766 0.89382 0.91798 0.91374 0.94226 0.87740 0.83171 0.78813 0.88258 0.91698 0.90248 0.91054 0.93237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 8.75 71.98 0.63 -4.17 16 2 C -0.09 -2.90 1.78 -10.79 -0.02 -2.92 16 3 C -0.14 -4.66 7.86 71.98 0.57 -4.10 16 4 C 0.16 6.27 0.68 -11.07 -0.01 6.26 16 5 C -0.18 -6.52 4.26 24.59 0.10 -6.42 16 6 C -0.15 -5.95 9.64 21.22 0.20 -5.75 16 7 C -0.14 -4.42 10.18 21.22 0.22 -4.21 16 8 C -0.22 -5.55 11.23 66.72 0.75 -4.80 16 9 S 0.12 3.37 20.77 -56.49 -1.17 2.20 16 10 C -0.13 -4.61 5.53 31.85 0.18 -4.43 16 11 C -0.14 -5.67 5.92 32.05 0.19 -5.49 16 12 C 0.21 10.83 3.22 30.51 0.10 10.93 16 13 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 14 C -0.55 -30.54 8.79 25.60 0.23 -30.32 16 15 H 0.06 3.46 7.76 -2.91 -0.02 3.44 16 16 C 0.03 1.50 5.43 84.66 0.46 1.96 16 17 N -0.90 -54.83 13.05 21.45 0.28 -54.55 16 18 Si 0.95 44.41 29.54 68.60 2.03 46.43 16 19 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 O -0.36 -18.27 8.22 -148.98 -1.22 -19.50 16 23 H 0.03 1.25 7.75 -2.39 -0.02 1.23 16 24 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.05 1.82 6.00 -2.39 -0.01 1.80 16 26 H 0.09 2.46 7.62 -2.38 -0.02 2.45 16 27 H 0.06 1.95 5.49 -2.39 -0.01 1.94 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.64 7.65 -2.38 -0.02 1.62 16 30 H 0.10 4.94 7.91 -2.91 -0.02 4.92 16 31 H 0.15 3.97 8.06 -2.91 -0.02 3.94 16 32 H 0.19 3.41 8.06 -2.91 -0.02 3.39 16 33 H 0.10 2.82 7.40 -2.39 -0.02 2.80 16 34 H 0.06 2.26 7.85 -2.39 -0.02 2.24 16 35 H 0.08 3.08 5.93 -2.38 -0.01 3.06 16 36 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -65.83 304.52 4.55 -61.28 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 1.05 Total: 17.56 kcal Atomic # 6 Polarization: -57.02 SS G_CDS: 3.59 Total: -53.43 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: 0.28 Total: -54.55 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -1.22 Total: -19.50 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: 3.37 SS G_CDS: -1.17 Total: 2.20 kcal Total: -65.83 4.55 -61.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390682413.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.001 kcal (2) G-P(sol) polarization free energy of solvation -65.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds