Wall clock time and date at job start Mon Mar 30 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47258 * 120.00168 * 2 1 3 5 5 C 1.50710 * 109.82275 * 179.44650 * 4 2 1 6 6 C 1.33385 * 125.20438 * 114.96144 * 5 4 2 7 7 C 1.38426 * 114.91996 * 179.85923 * 6 5 4 8 8 C 1.33383 * 114.92085 * 0.42814 * 7 6 5 9 9 S 1.75882 * 125.20005 * 295.26463 * 5 4 2 10 10 C 1.54378 * 109.83233 * 58.55861 * 4 2 1 11 11 C 1.55305 * 102.24998 * 261.84343 * 10 4 2 12 12 C 1.54949 * 100.94395 * 325.86332 * 11 10 4 13 13 H 1.08996 * 110.30910 * 277.53527 * 12 11 10 14 14 C 1.50694 * 110.30766 * 155.45631 * 12 11 10 15 15 H 1.08002 * 120.00497 * 1.40009 * 14 12 11 16 16 C 1.37882 * 120.00087 * 181.38791 * 14 12 11 17 17 N 1.31512 * 119.99467 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00354 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46918 * 90.00326 * 18 16 14 20 20 H 1.48491 * 109.47096 * 210.00711 * 18 16 14 21 21 H 1.48500 * 109.47009 * 330.00459 * 18 16 14 22 22 O 1.43234 * 109.83044 * 300.42185 * 4 2 1 23 23 H 1.09002 * 109.46952 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47367 * 299.99419 * 1 2 3 25 25 H 1.09002 * 109.47603 * 60.00258 * 1 2 3 26 26 H 1.09001 * 109.47367 * 240.00581 * 2 1 3 27 27 H 1.08992 * 109.47153 * 185.34093 * 3 2 1 28 28 H 1.08999 * 109.46726 * 305.34490 * 3 2 1 29 29 H 1.09000 * 109.47079 * 65.33976 * 3 2 1 30 30 H 1.08001 * 122.54026 * 0.02562 * 6 5 4 31 31 H 1.07997 * 122.54042 * 180.20050 * 7 6 5 32 32 H 1.07996 * 125.20481 * 179.74964 * 8 7 6 33 33 H 1.08997 * 110.85035 * 143.65343 * 10 4 2 34 34 H 1.09001 * 111.02361 * 20.10935 * 10 4 2 35 35 H 1.09003 * 111.12385 * 207.94462 * 11 10 4 36 36 H 1.08997 * 111.12432 * 83.79080 * 11 10 4 37 37 H 0.97004 * 119.99852 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5469 -0.7377 1.2503 6 6 4.3221 -0.1176 2.1413 7 6 5.6826 -0.2775 1.9422 8 6 6.0123 -1.0201 0.8844 9 16 4.5526 -1.5715 0.0727 10 6 1.5004 -2.1674 1.2760 11 6 0.2802 -2.0463 2.2291 12 6 0.7881 -0.9704 3.2219 13 1 1.4161 -1.4276 3.9865 14 6 -0.3756 -0.2565 3.8598 15 1 -1.3869 -0.5443 3.6130 16 6 -0.1494 0.7641 4.7588 17 7 1.0821 1.1148 5.0591 18 14 -1.5918 1.6487 5.5502 19 1 -1.9661 0.9567 6.8097 20 1 -1.2076 3.0511 5.8512 21 1 -2.7484 1.6413 4.6188 22 8 1.5587 -0.0578 2.4239 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 3.1257 1.4440 -0.0956 28 1 1.6005 1.9832 -0.8383 29 1 1.7568 1.9280 0.9339 30 1 3.9187 0.4630 2.9577 31 1 6.4211 0.1684 2.5919 32 1 7.0212 -1.2478 0.5737 33 1 2.2445 -2.8517 1.6835 34 1 1.1860 -2.4860 0.2821 35 1 0.0845 -2.9898 2.7386 36 1 -0.6039 -1.7006 1.6935 37 1 1.2413 1.8331 5.6913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000390682414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:51 Heat of formation + Delta-G solvation = -21.861071 kcal Electronic energy + Delta-G solvation = -19202.454403 eV Core-core repulsion = 16457.148444 eV Total energy + Delta-G solvation = -2745.305959 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.36890 -36.83960 -34.19419 -32.33216 -31.03235 -29.94357 -27.41657 -26.28889 -24.89693 -22.92407 -21.56998 -20.48829 -19.16150 -18.43567 -16.81409 -16.51697 -15.23696 -15.14288 -14.72723 -14.13624 -13.93900 -13.06814 -12.90730 -12.53936 -12.42202 -12.15948 -11.90805 -11.75509 -11.57678 -11.43107 -11.28549 -10.93180 -10.74310 -10.62355 -10.52039 -10.43356 -10.18372 -10.12124 -9.97645 -9.58856 -9.08315 -8.59363 -8.16891 -8.03402 -7.91042 -6.02123 -4.14277 1.46522 2.04140 2.42533 3.29541 3.29930 3.37089 3.39673 4.41336 4.94206 5.15886 5.30331 5.40747 5.41559 5.50005 5.71710 5.81688 5.86494 5.94534 6.14767 6.21157 6.24665 6.26630 6.38706 6.45099 6.53667 6.58071 6.59417 6.71115 6.78368 6.84236 6.99043 7.04358 7.06900 7.12945 7.59043 7.88222 8.25764 8.61421 9.01263 9.56377 11.05062 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.007153 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.907820 B = 3913.521206 C = 4296.187902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.083 4.083 3 C -0.138 4.138 4 C 0.174 3.826 5 C -0.148 4.148 6 C -0.130 4.130 7 C -0.125 4.125 8 C -0.233 4.233 9 S 0.059 5.941 10 C -0.146 4.146 11 C -0.150 4.150 12 C 0.212 3.788 13 H 0.026 0.974 14 C -0.530 4.530 15 H 0.062 0.938 16 C 0.080 3.920 17 N -0.861 5.861 18 Si 0.888 3.112 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.329 6.329 23 H 0.052 0.948 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.058 0.942 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.133 0.867 32 H 0.155 0.845 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.469 -3.798 -9.284 11.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.196 4.196 4 C 0.130 3.870 5 C -0.265 4.265 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.368 4.368 9 S 0.320 5.680 10 C -0.184 4.184 11 C -0.187 4.187 12 C 0.157 3.843 13 H 0.044 0.956 14 C -0.568 4.568 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.497 5.497 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 O -0.248 6.248 23 H 0.071 0.929 24 H 0.098 0.902 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.172 0.828 31 H 0.151 0.849 32 H 0.173 0.827 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.362 -4.342 -10.384 12.468 hybrid contribution -0.214 1.140 1.647 2.015 sum 5.148 -3.203 -8.737 10.635 Atomic orbital electron populations 1.21928 0.94611 1.01590 1.02246 1.21281 0.96531 0.96798 0.95592 1.21703 0.99880 0.95854 1.02118 1.20227 0.84860 0.91792 0.90119 1.25086 0.99864 1.02783 0.98769 1.20318 0.91794 1.02132 1.01556 1.20261 0.96629 1.00495 0.98202 1.25418 1.01068 1.08036 1.02268 1.83919 0.97610 1.54232 1.32229 1.23179 0.98857 0.96072 1.00265 1.23468 0.96997 1.00455 0.97797 1.20518 0.89898 0.85969 0.87920 0.95590 1.21059 0.91808 1.19704 1.24181 0.91973 1.25040 0.95391 0.96486 0.95684 1.70020 1.19029 1.28212 1.32421 0.86677 0.82988 0.79105 0.79669 1.20634 1.21158 1.19780 1.88861 1.69343 1.36084 1.30553 0.92924 0.90178 0.93988 0.92339 0.93586 0.93915 0.90963 0.82763 0.84875 0.82715 0.91638 0.91504 0.92151 0.90832 0.92984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 7.78 37.15 0.29 -2.25 16 2 C -0.08 -1.46 2.20 -90.62 -0.20 -1.66 16 3 C -0.14 -2.45 8.79 37.16 0.33 -2.12 16 4 C 0.17 3.38 0.70 -91.05 -0.06 3.32 16 5 C -0.15 -2.73 3.84 -36.00 -0.14 -2.87 16 6 C -0.13 -2.47 9.60 -41.21 -0.40 -2.86 16 7 C -0.12 -1.98 10.18 -41.21 -0.42 -2.40 16 8 C -0.23 -3.34 11.23 29.04 0.33 -3.02 16 9 S 0.06 0.89 23.17 -107.50 -2.49 -1.60 16 10 C -0.15 -2.64 5.39 -24.79 -0.13 -2.77 16 11 C -0.15 -3.01 5.92 -24.48 -0.14 -3.16 16 12 C 0.21 5.25 3.24 -26.86 -0.09 5.16 16 13 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 14 C -0.53 -14.26 8.80 -34.44 -0.30 -14.57 16 15 H 0.06 1.63 7.76 -52.49 -0.41 1.23 16 16 C 0.08 2.19 5.42 -17.82 -0.10 2.10 16 17 N -0.86 -24.65 12.99 55.43 0.72 -23.93 16 18 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 O -0.33 -7.92 7.68 -35.23 -0.27 -8.19 16 23 H 0.05 0.86 5.50 -51.93 -0.29 0.58 16 24 H 0.08 1.64 7.69 -51.93 -0.40 1.24 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.80 7.45 -51.93 -0.39 0.41 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.48 7.56 -51.93 -0.39 1.09 16 30 H 0.15 3.37 7.58 -52.49 -0.40 2.98 16 31 H 0.13 1.81 8.06 -52.49 -0.42 1.39 16 32 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 33 H 0.06 1.18 7.84 -51.93 -0.41 0.77 16 34 H 0.07 1.06 7.33 -51.93 -0.38 0.68 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.07 1.45 5.95 -51.93 -0.31 1.14 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 307.57 15.07 4.64 4.64 Total: -1.00 -28.16 307.57 -8.93 -37.09 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.46 Total: 3.15 kcal Atomic # 6 Polarization: -26.06 SS G_CDS: -1.04 Total: -27.10 kcal Atomic # 7 Polarization: -24.65 SS G_CDS: 0.72 Total: -23.93 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: -0.27 Total: -8.19 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 0.89 SS G_CDS: -2.49 Total: -1.60 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.16 -8.93 -37.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390682414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.229 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds