Wall clock time and date at job start Mon Mar 30 2020 06:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47145 * 2 1 4 4 C 1.52997 * 109.47258 * 120.00168 * 2 1 3 5 5 C 1.50710 * 109.82275 * 179.44650 * 4 2 1 6 6 C 1.33385 * 125.20438 * 114.96144 * 5 4 2 7 7 C 1.38426 * 114.91996 * 179.85923 * 6 5 4 8 8 C 1.33383 * 114.92085 * 0.42814 * 7 6 5 9 9 S 1.75882 * 125.20005 * 295.26463 * 5 4 2 10 10 C 1.54378 * 109.83233 * 58.55861 * 4 2 1 11 11 C 1.55305 * 102.24998 * 261.84343 * 10 4 2 12 12 C 1.54949 * 100.94395 * 325.86332 * 11 10 4 13 13 H 1.08996 * 110.30910 * 277.53527 * 12 11 10 14 14 C 1.50694 * 110.30766 * 155.45631 * 12 11 10 15 15 H 1.08002 * 120.00497 * 1.40009 * 14 12 11 16 16 C 1.37882 * 120.00087 * 181.38791 * 14 12 11 17 17 N 1.31512 * 119.99467 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 120.00354 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46918 * 90.00326 * 18 16 14 20 20 H 1.48491 * 109.47096 * 210.00711 * 18 16 14 21 21 H 1.48500 * 109.47009 * 330.00459 * 18 16 14 22 22 O 1.43234 * 109.83044 * 300.42185 * 4 2 1 23 23 H 1.09002 * 109.46952 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47367 * 299.99419 * 1 2 3 25 25 H 1.09002 * 109.47603 * 60.00258 * 1 2 3 26 26 H 1.09001 * 109.47367 * 240.00581 * 2 1 3 27 27 H 1.08992 * 109.47153 * 185.34093 * 3 2 1 28 28 H 1.08999 * 109.46726 * 305.34490 * 3 2 1 29 29 H 1.09000 * 109.47079 * 65.33976 * 3 2 1 30 30 H 1.08001 * 122.54026 * 0.02562 * 6 5 4 31 31 H 1.07997 * 122.54042 * 180.20050 * 7 6 5 32 32 H 1.07996 * 125.20481 * 179.74964 * 8 7 6 33 33 H 1.08997 * 110.85035 * 143.65343 * 10 4 2 34 34 H 1.09001 * 111.02361 * 20.10935 * 10 4 2 35 35 H 1.09003 * 111.12385 * 207.94462 * 11 10 4 36 36 H 1.08997 * 111.12432 * 83.79080 * 11 10 4 37 37 H 0.97004 * 119.99852 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 3.5469 -0.7377 1.2503 6 6 4.3221 -0.1176 2.1413 7 6 5.6826 -0.2775 1.9422 8 6 6.0123 -1.0201 0.8844 9 16 4.5526 -1.5715 0.0727 10 6 1.5004 -2.1674 1.2760 11 6 0.2802 -2.0463 2.2291 12 6 0.7881 -0.9704 3.2219 13 1 1.4161 -1.4276 3.9865 14 6 -0.3756 -0.2565 3.8598 15 1 -1.3869 -0.5443 3.6130 16 6 -0.1494 0.7641 4.7588 17 7 1.0821 1.1148 5.0591 18 14 -1.5918 1.6487 5.5502 19 1 -1.9661 0.9567 6.8097 20 1 -1.2076 3.0511 5.8512 21 1 -2.7484 1.6413 4.6188 22 8 1.5587 -0.0578 2.4239 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5137 -0.8900 27 1 3.1257 1.4440 -0.0956 28 1 1.6005 1.9832 -0.8383 29 1 1.7568 1.9280 0.9339 30 1 3.9187 0.4630 2.9577 31 1 6.4211 0.1684 2.5919 32 1 7.0212 -1.2478 0.5737 33 1 2.2445 -2.8517 1.6835 34 1 1.1860 -2.4860 0.2821 35 1 0.0845 -2.9898 2.7386 36 1 -0.6039 -1.7006 1.6935 37 1 1.2413 1.8331 5.6913 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000390682414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:51 Heat of formation + Delta-G solvation = -36.528773 kcal Electronic energy + Delta-G solvation = -19203.090442 eV Core-core repulsion = 16457.148444 eV Total energy + Delta-G solvation = -2745.941999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.94818 -38.20762 -35.82944 -34.30754 -32.69389 -31.40086 -29.12772 -27.69698 -26.63486 -24.38586 -23.13554 -22.19409 -20.60645 -19.81782 -18.63857 -18.11214 -16.85620 -16.64768 -16.46035 -15.82327 -15.33377 -14.58719 -14.53556 -14.25218 -13.84164 -13.61709 -13.47997 -13.34188 -12.99287 -12.84242 -12.80776 -12.76279 -12.40005 -12.28740 -12.22927 -11.94240 -11.80495 -11.56705 -11.51286 -11.13899 -10.91568 -10.67834 -9.86883 -9.39162 -9.25797 -8.11441 -6.30449 0.17667 0.76714 1.14385 1.40250 1.41498 1.51494 1.94244 2.41759 3.09042 3.59623 3.72185 3.89813 3.98237 4.23828 4.30118 4.34249 4.44411 4.60643 4.71612 4.76303 4.83754 4.88132 4.89466 4.95914 4.99943 5.07871 5.14802 5.19942 5.32216 5.35470 5.51790 5.56762 5.60568 5.70073 5.72823 5.79953 6.23051 6.66092 7.10960 7.44912 8.95903 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023928 B = 0.007153 C = 0.006516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.907820 B = 3913.521206 C = 4296.187902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.082 4.082 3 C -0.131 4.131 4 C 0.161 3.839 5 C -0.176 4.176 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.214 4.214 9 S 0.115 5.885 10 C -0.136 4.136 11 C -0.140 4.140 12 C 0.208 3.792 13 H -0.019 1.019 14 C -0.544 4.544 15 H 0.065 0.935 16 C 0.027 3.973 17 N -0.898 5.898 18 Si 0.954 3.046 19 H -0.272 1.272 20 H -0.287 1.287 21 H -0.264 1.264 22 O -0.356 6.356 23 H 0.064 0.936 24 H 0.039 0.961 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.045 0.955 28 H 0.067 0.933 29 H 0.030 0.970 30 H 0.108 0.892 31 H 0.150 0.850 32 H 0.195 0.805 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.767 -4.979 -11.927 14.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.100 4.100 3 C -0.188 4.188 4 C 0.118 3.882 5 C -0.294 4.294 6 C -0.179 4.179 7 C -0.174 4.174 8 C -0.349 4.349 9 S 0.376 5.624 10 C -0.173 4.173 11 C -0.178 4.178 12 C 0.153 3.847 13 H -0.001 1.001 14 C -0.582 4.582 15 H 0.083 0.917 16 C -0.176 4.176 17 N -0.536 5.536 18 Si 0.779 3.221 19 H -0.198 1.198 20 H -0.213 1.213 21 H -0.189 1.189 22 O -0.275 6.275 23 H 0.082 0.918 24 H 0.058 0.942 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.126 0.874 31 H 0.168 0.832 32 H 0.212 0.788 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.651 -5.535 -13.036 15.248 hybrid contribution -0.220 1.472 2.414 2.836 sum 5.431 -4.063 -10.623 12.603 Atomic orbital electron populations 1.21854 0.94375 1.02105 1.01481 1.21330 0.96699 0.96496 0.95519 1.21611 1.00034 0.96240 1.00903 1.20528 0.85882 0.92547 0.89213 1.25068 0.99804 1.04010 1.00467 1.20179 0.93838 1.02831 1.01026 1.20295 0.95308 1.02009 0.99773 1.25893 1.02675 1.05667 1.00651 1.83615 0.96387 1.52479 1.29869 1.23158 0.97621 0.95230 1.01337 1.23339 0.98018 0.99237 0.97203 1.20289 0.88817 0.87128 0.88493 1.00105 1.21440 0.92622 1.19695 1.24437 0.91733 1.25862 0.97841 0.97430 0.96426 1.70177 1.21144 1.28909 1.33364 0.85644 0.79897 0.77637 0.78956 1.19771 1.21283 1.18850 1.88786 1.69737 1.36771 1.32230 0.91759 0.94185 0.91425 0.89484 0.93571 0.91417 0.95045 0.87445 0.83238 0.78809 0.91629 0.88202 0.91049 0.90204 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 7.78 71.98 0.56 -4.11 16 2 C -0.08 -2.75 2.20 -10.80 -0.02 -2.77 16 3 C -0.13 -4.57 8.79 71.98 0.63 -3.94 16 4 C 0.16 6.27 0.70 -11.07 -0.01 6.26 16 5 C -0.18 -6.47 3.84 24.59 0.09 -6.38 16 6 C -0.15 -5.91 9.60 21.22 0.20 -5.70 16 7 C -0.14 -4.45 10.18 21.22 0.22 -4.23 16 8 C -0.21 -5.44 11.23 66.72 0.75 -4.69 16 9 S 0.11 3.12 23.17 -56.49 -1.31 1.81 16 10 C -0.14 -4.72 5.39 31.85 0.17 -4.54 16 11 C -0.14 -5.64 5.92 32.05 0.19 -5.45 16 12 C 0.21 10.83 3.24 30.51 0.10 10.92 16 13 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 14 C -0.54 -30.44 8.80 25.60 0.23 -30.21 16 15 H 0.06 3.47 7.76 -2.91 -0.02 3.45 16 16 C 0.03 1.51 5.42 84.66 0.46 1.97 16 17 N -0.90 -54.47 12.99 21.45 0.28 -54.19 16 18 Si 0.95 44.33 29.54 68.60 2.03 46.36 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 22 O -0.36 -18.03 7.68 -148.98 -1.14 -19.17 16 23 H 0.06 1.94 5.50 -2.39 -0.01 1.93 16 24 H 0.04 1.64 7.69 -2.39 -0.02 1.62 16 25 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 27 H 0.05 1.58 7.45 -2.39 -0.02 1.56 16 28 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.03 1.33 7.56 -2.39 -0.02 1.31 16 30 H 0.11 5.21 7.58 -2.91 -0.02 5.19 16 31 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.19 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.06 2.27 7.84 -2.39 -0.02 2.25 16 34 H 0.10 2.81 7.33 -2.39 -0.02 2.79 16 35 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 36 H 0.08 3.09 5.95 -2.39 -0.01 3.07 16 37 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -65.25 307.57 4.46 -60.79 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 1.04 Total: 17.28 kcal Atomic # 6 Polarization: -56.44 SS G_CDS: 3.57 Total: -52.87 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.28 Total: -54.19 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.14 Total: -19.17 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -65.25 4.46 -60.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000390682414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.258 kcal (2) G-P(sol) polarization free energy of solvation -65.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds