Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00264 * 2 1 4 4 H 1.48503 * 109.47187 * 274.99090 * 3 2 1 5 5 H 1.48502 * 109.46994 * 34.98450 * 3 2 1 6 6 H 1.48497 * 109.47488 * 154.98468 * 3 2 1 7 7 C 1.37878 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 188.55429 * 7 2 1 9 9 C 1.50695 * 120.00110 * 8.55450 * 7 2 1 10 10 H 1.09005 * 110.01675 * 304.56144 * 9 7 2 11 11 C 1.53872 * 110.03514 * 65.95310 * 9 7 2 12 12 C 1.54269 * 106.59998 * 119.28591 * 11 9 7 13 13 C 1.54892 * 104.19227 * 23.61312 * 12 11 9 14 14 H 1.09002 * 110.75927 * 80.55620 * 13 12 11 15 15 N 1.46501 * 110.75282 * 203.74314 * 13 12 11 16 16 C 1.32218 * 119.99765 * 260.52138 * 15 13 12 17 17 C 1.46831 * 121.20660 * 194.75867 * 16 15 13 18 18 C 1.34682 * 118.55319 * 180.02562 * 17 16 15 19 19 N 1.35869 * 121.29534 * 359.97438 * 18 17 16 20 20 H 0.97002 * 118.60575 * 180.02562 * 19 18 17 21 21 C 1.35997 * 122.79421 * 0.02562 * 19 18 17 22 22 C 1.34734 * 121.24772 * 359.69513 * 21 19 18 23 23 Cl 1.73605 * 120.73667 * 180.29198 * 22 21 19 24 24 C 1.54265 * 110.03362 * 183.12460 * 9 7 2 25 25 H 0.96999 * 119.99500 * 359.97438 * 1 2 3 26 26 H 1.09005 * 110.03646 * 238.57053 * 11 9 7 27 27 H 1.08993 * 110.03258 * 359.95694 * 11 9 7 28 28 H 1.08997 * 110.48686 * 142.28498 * 12 11 9 29 29 H 1.08997 * 110.48656 * 264.93922 * 12 11 9 30 30 H 1.08006 * 120.72456 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.35373 * 180.02562 * 18 17 16 32 32 H 1.07997 * 119.37788 * 180.02562 * 21 19 18 33 33 H 1.08999 * 110.48553 * 335.78064 * 24 9 7 34 34 H 1.09004 * 110.48735 * 98.42363 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4121 0.5920 7 6 2.0045 -1.1941 -0.0005 8 1 3.0755 -1.1993 0.1386 9 6 1.2636 -2.4918 -0.1952 10 1 0.4712 -2.5841 0.5475 11 6 0.6672 -2.5508 -1.6124 12 6 1.3020 -3.7732 -2.3072 13 6 1.7362 -4.6915 -1.1379 14 1 0.8882 -5.2620 -0.7591 15 7 2.8173 -5.5877 -1.5555 16 6 2.5471 -6.8373 -1.8926 17 6 3.6116 -7.8425 -2.0038 18 6 3.2761 -9.0996 -2.3514 19 7 1.9846 -9.4434 -2.5961 20 1 1.7869 -10.3603 -2.8434 21 6 0.9572 -8.5567 -2.5091 22 6 1.1702 -7.2718 -2.1642 23 17 -0.1522 -6.1528 -2.0498 24 6 2.2400 -3.6804 -0.0781 25 1 -0.4849 0.8401 0.0004 26 1 -0.4146 -2.6725 -1.5576 27 1 0.9130 -1.6405 -2.1591 28 1 0.5687 -4.2778 -2.9363 29 1 2.1677 -3.4704 -2.8961 30 1 4.6413 -7.5792 -1.8118 31 1 4.0487 -9.8495 -2.4366 32 1 -0.0492 -8.8899 -2.7152 33 1 3.2571 -3.3626 -0.3072 34 1 2.1913 -4.1172 0.9194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393423871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = 53.882283 kcal Electronic energy + Delta-G solvation = -17744.468848 eV Core-core repulsion = 14896.863318 eV Total energy + Delta-G solvation = -2847.605531 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.96734 -37.56846 -36.29284 -34.44005 -32.21492 -31.46886 -29.90465 -27.82118 -26.57374 -23.83113 -23.13282 -21.90783 -19.44251 -19.06576 -18.76749 -16.58908 -16.47058 -15.71878 -15.18197 -14.53602 -14.44899 -14.28485 -14.09147 -13.05982 -12.75676 -12.49085 -12.12498 -11.80577 -11.59724 -11.46364 -10.93992 -10.69510 -10.65920 -10.33757 -10.00742 -9.89989 -9.53684 -9.42346 -9.34580 -8.99964 -8.51973 -8.20028 -8.02192 -7.00032 -5.86494 -3.85621 1.32942 1.51818 2.15890 3.10851 3.40697 3.47096 3.51487 3.59843 4.38493 4.54282 4.58490 4.95909 5.18934 5.38561 5.45575 5.81087 5.93290 6.01858 6.08168 6.25362 6.45370 6.58325 6.81753 6.85950 6.97298 7.00648 7.05760 7.19076 7.27327 7.46224 7.55844 7.87920 8.07868 8.16818 8.52350 8.68143 9.17973 9.76071 11.23838 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.041889 B = 0.004736 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.270936 B = 5910.318644 C = 6379.590699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.045 3.955 10 H 0.029 0.971 11 C -0.092 4.092 12 C -0.118 4.118 13 C 0.039 3.961 14 H 0.082 0.918 15 N -0.515 5.515 16 C 0.206 3.794 17 C -0.169 4.169 18 C 0.090 3.910 19 N -0.616 5.616 20 H 0.414 0.586 21 C 0.121 3.879 22 C -0.168 4.168 23 Cl -0.029 7.029 24 C -0.093 4.093 25 H 0.257 0.743 26 H 0.033 0.967 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.149 0.851 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.060 0.940 34 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 -22.956 -6.846 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.713 3.287 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.026 3.974 10 H 0.048 0.952 11 C -0.130 4.130 12 C -0.156 4.156 13 C -0.071 4.071 14 H 0.099 0.901 15 N -0.227 5.227 16 C 0.023 3.977 17 C -0.195 4.195 18 C -0.034 4.034 19 N -0.226 5.226 20 H 0.249 0.751 21 C -0.007 4.007 22 C -0.206 4.206 23 Cl 0.000 7.000 24 C -0.131 4.131 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.166 0.834 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.079 0.921 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.194 -21.871 -6.661 22.967 hybrid contribution -0.650 0.507 -0.280 0.871 sum 1.544 -21.364 -6.941 22.516 Atomic orbital electron populations 1.70005 1.05890 1.26155 1.50963 1.24973 0.94744 0.98881 0.95441 0.86694 0.80116 0.84032 0.77870 1.20846 1.21450 1.19898 1.21293 0.93701 0.90829 1.48594 0.92696 1.19233 0.93567 0.91830 0.92750 0.95235 1.22062 0.97205 0.95104 0.98666 1.22769 0.99273 0.96999 0.96540 1.23640 0.92635 0.93715 0.97082 0.90059 1.72927 1.35319 1.00790 1.13617 1.21312 0.87478 0.92254 0.96659 1.21527 0.99105 0.90319 1.08537 1.21350 0.85484 0.97831 0.98765 1.40633 1.04774 1.12537 1.64685 0.75132 1.21118 0.92708 0.89270 0.97604 1.22526 0.91223 0.91691 1.15116 1.98350 1.46486 1.59320 1.95839 1.22394 1.00701 0.95134 0.94882 0.93306 0.94794 0.92485 0.93156 0.92784 0.83374 0.82280 0.82474 0.92134 0.94380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 12.97 55.43 0.72 -26.44 16 2 C 0.06 1.78 5.09 -17.82 -0.09 1.69 16 3 Si 0.88 22.50 29.55 -169.99 -5.02 17.48 16 4 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.51 -14.98 8.26 -34.44 -0.28 -15.26 16 8 H 0.05 1.62 7.54 -52.48 -0.40 1.23 16 9 C 0.05 1.24 2.71 -90.66 -0.25 0.99 16 10 H 0.03 0.87 8.12 -51.93 -0.42 0.45 16 11 C -0.09 -2.35 5.97 -25.61 -0.15 -2.51 16 12 C -0.12 -2.63 5.94 -25.07 -0.15 -2.78 16 13 C 0.04 0.84 2.57 -65.93 -0.17 0.67 16 14 H 0.08 1.71 4.57 -51.93 -0.24 1.47 16 15 N -0.51 -10.34 10.40 -47.44 -0.49 -10.84 16 16 C 0.21 3.31 6.93 -80.72 -0.56 2.75 16 17 C -0.17 -1.95 10.28 -37.37 -0.38 -2.33 16 18 C 0.09 0.63 11.13 -17.02 -0.19 0.44 16 19 N -0.62 -3.70 5.22 -13.11 -0.07 -3.77 16 20 H 0.41 0.77 8.88 -40.82 -0.36 0.41 16 21 C 0.12 1.07 10.92 -16.95 -0.19 0.89 16 22 C -0.17 -2.32 6.37 -37.31 -0.24 -2.56 16 23 Cl -0.03 -0.45 21.38 -51.86 -1.11 -1.56 16 24 C -0.09 -2.27 6.03 -25.07 -0.15 -2.42 16 25 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.58 7.48 -51.93 -0.39 1.19 16 28 H 0.05 1.03 5.73 -51.93 -0.30 0.73 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.15 1.59 8.06 -52.48 -0.42 1.17 16 31 H 0.16 0.45 8.06 -52.48 -0.42 0.02 16 32 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.06 1.54 7.66 -51.93 -0.40 1.14 16 34 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 289.94 15.07 4.37 4.37 Total: -1.00 -35.48 289.94 -8.58 -44.06 By element: Atomic # 1 Polarization: 1.29 SS G_CDS: -4.17 Total: -2.88 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.80 Total: -20.42 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.16 Total: -41.04 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.11 Total: -1.56 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -35.48 -8.58 -44.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393423871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.941 kcal (2) G-P(sol) polarization free energy of solvation -35.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds