Wall clock time and date at job start Mon Mar 30 2020 06:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00264 * 2 1 4 4 H 1.48503 * 109.47187 * 274.99090 * 3 2 1 5 5 H 1.48502 * 109.46994 * 34.98450 * 3 2 1 6 6 H 1.48497 * 109.47488 * 154.98468 * 3 2 1 7 7 C 1.37878 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00033 * 188.55429 * 7 2 1 9 9 C 1.50695 * 120.00110 * 8.55450 * 7 2 1 10 10 H 1.09005 * 110.01675 * 304.56144 * 9 7 2 11 11 C 1.53872 * 110.03514 * 65.95310 * 9 7 2 12 12 C 1.54269 * 106.59998 * 119.28591 * 11 9 7 13 13 C 1.54892 * 104.19227 * 23.61312 * 12 11 9 14 14 H 1.09002 * 110.75927 * 80.55620 * 13 12 11 15 15 N 1.46501 * 110.75282 * 203.74314 * 13 12 11 16 16 C 1.32218 * 119.99765 * 260.52138 * 15 13 12 17 17 C 1.46831 * 121.20660 * 194.75867 * 16 15 13 18 18 C 1.34682 * 118.55319 * 180.02562 * 17 16 15 19 19 N 1.35869 * 121.29534 * 359.97438 * 18 17 16 20 20 H 0.97002 * 118.60575 * 180.02562 * 19 18 17 21 21 C 1.35997 * 122.79421 * 0.02562 * 19 18 17 22 22 C 1.34734 * 121.24772 * 359.69513 * 21 19 18 23 23 Cl 1.73605 * 120.73667 * 180.29198 * 22 21 19 24 24 C 1.54265 * 110.03362 * 183.12460 * 9 7 2 25 25 H 0.96999 * 119.99500 * 359.97438 * 1 2 3 26 26 H 1.09005 * 110.03646 * 238.57053 * 11 9 7 27 27 H 1.08993 * 110.03258 * 359.95694 * 11 9 7 28 28 H 1.08997 * 110.48686 * 142.28498 * 12 11 9 29 29 H 1.08997 * 110.48656 * 264.93922 * 12 11 9 30 30 H 1.08006 * 120.72456 * 359.97438 * 17 16 15 31 31 H 1.08003 * 119.35373 * 180.02562 * 18 17 16 32 32 H 1.07997 * 119.37788 * 180.02562 * 21 19 18 33 33 H 1.08999 * 110.48553 * 335.78064 * 24 9 7 34 34 H 1.09004 * 110.48735 * 98.42363 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3913 2.1073 -1.3948 5 1 1.5033 2.6200 0.8028 6 1 3.5955 1.4121 0.5920 7 6 2.0045 -1.1941 -0.0005 8 1 3.0755 -1.1993 0.1386 9 6 1.2636 -2.4918 -0.1952 10 1 0.4712 -2.5841 0.5475 11 6 0.6672 -2.5508 -1.6124 12 6 1.3020 -3.7732 -2.3072 13 6 1.7362 -4.6915 -1.1379 14 1 0.8882 -5.2620 -0.7591 15 7 2.8173 -5.5877 -1.5555 16 6 2.5471 -6.8373 -1.8926 17 6 3.6116 -7.8425 -2.0038 18 6 3.2761 -9.0996 -2.3514 19 7 1.9846 -9.4434 -2.5961 20 1 1.7869 -10.3603 -2.8434 21 6 0.9572 -8.5567 -2.5091 22 6 1.1702 -7.2718 -2.1642 23 17 -0.1522 -6.1528 -2.0498 24 6 2.2400 -3.6804 -0.0781 25 1 -0.4849 0.8401 0.0004 26 1 -0.4146 -2.6725 -1.5576 27 1 0.9130 -1.6405 -2.1591 28 1 0.5687 -4.2778 -2.9363 29 1 2.1677 -3.4704 -2.8961 30 1 4.6413 -7.5792 -1.8118 31 1 4.0487 -9.8495 -2.4366 32 1 -0.0492 -8.8899 -2.7152 33 1 3.2571 -3.3626 -0.3072 34 1 2.1913 -4.1172 0.9194 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393423871.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:58 Heat of formation + Delta-G solvation = 28.184358 kcal Electronic energy + Delta-G solvation = -17745.583194 eV Core-core repulsion = 14896.863318 eV Total energy + Delta-G solvation = -2848.719877 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.84059 -39.18908 -37.52272 -35.81366 -34.24978 -32.30523 -31.20056 -29.81253 -28.29320 -25.82410 -24.06064 -23.09791 -21.04729 -20.85338 -19.82237 -18.38959 -17.56934 -17.25512 -16.56448 -16.33450 -15.85066 -15.37264 -15.08274 -14.74374 -14.31428 -13.89345 -13.72606 -13.26626 -13.02347 -12.94221 -12.81692 -12.64447 -12.39171 -12.12709 -11.72535 -11.61231 -11.48735 -11.08115 -10.96180 -10.71656 -10.49258 -10.25103 -9.35597 -8.15509 -8.05657 -6.22362 0.43037 0.64462 1.22934 1.36883 1.38710 1.50036 2.39668 2.42058 2.61308 3.14981 3.60089 3.62945 4.12417 4.18878 4.27230 4.33978 4.37445 4.57897 4.73283 4.85107 4.97030 5.03789 5.11106 5.12879 5.18409 5.34982 5.40408 5.56718 5.63075 5.65737 5.87157 5.92918 6.04354 6.41341 6.52741 6.87114 7.34187 7.43098 8.95856 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.041889 B = 0.004736 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 668.270936 B = 5910.318644 C = 6379.590699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.012 3.988 3 Si 0.955 3.045 4 H -0.275 1.275 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.532 4.532 8 H 0.047 0.953 9 C 0.041 3.959 10 H -0.003 1.003 11 C -0.080 4.080 12 C -0.106 4.106 13 C 0.063 3.937 14 H 0.084 0.916 15 N -0.599 5.599 16 C 0.218 3.782 17 C -0.222 4.222 18 C 0.144 3.856 19 N -0.586 5.586 20 H 0.445 0.555 21 C 0.173 3.827 22 C -0.230 4.230 23 Cl -0.058 7.058 24 C -0.089 4.089 25 H 0.261 0.739 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.069 0.931 29 H 0.037 0.963 30 H 0.148 0.852 31 H 0.221 0.779 32 H 0.200 0.800 33 H 0.040 0.960 34 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.347 -27.103 -8.276 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.022 3.978 10 H 0.015 0.985 11 C -0.119 4.119 12 C -0.144 4.144 13 C -0.047 4.047 14 H 0.102 0.898 15 N -0.315 5.315 16 C 0.040 3.960 17 C -0.248 4.248 18 C 0.017 3.983 19 N -0.195 5.195 20 H 0.285 0.715 21 C 0.042 3.958 22 C -0.267 4.267 23 Cl -0.029 7.029 24 C -0.127 4.127 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.088 0.912 29 H 0.056 0.944 30 H 0.165 0.835 31 H 0.237 0.763 32 H 0.216 0.784 33 H 0.059 0.941 34 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.789 -26.110 -8.112 27.483 hybrid contribution -0.848 1.297 0.071 1.552 sum 1.941 -24.813 -8.041 26.155 Atomic orbital electron populations 1.70123 1.07351 1.27290 1.51249 1.25791 0.95680 1.02494 0.94677 0.85595 0.78888 0.79294 0.78238 1.20054 1.20303 1.19271 1.21573 0.93554 0.92394 1.49483 0.93505 1.19192 0.93237 0.92673 0.92707 0.98523 1.21841 0.96725 0.95556 0.97776 1.22654 0.98670 0.95927 0.97101 1.23182 0.93276 0.93350 0.94915 0.89832 1.72905 1.33652 1.02948 1.22027 1.22109 0.89949 0.91739 0.92187 1.21639 0.98488 0.91299 1.13361 1.22132 0.86564 0.97047 0.92517 1.41033 1.04184 1.13654 1.60663 0.71455 1.21632 0.94983 0.87520 0.91664 1.22452 0.89759 0.93393 1.21128 1.98323 1.47243 1.61110 1.96242 1.22233 0.98733 0.95354 0.96356 0.92970 0.95594 0.95411 0.91214 0.94409 0.83464 0.76301 0.78354 0.94086 0.94578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.31 12.97 21.45 0.28 -58.03 16 2 C 0.01 0.73 5.09 84.65 0.43 1.16 16 3 Si 0.95 47.59 29.55 68.60 2.03 49.61 16 4 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 6 H -0.27 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.53 -33.36 8.26 25.60 0.21 -33.15 16 8 H 0.05 2.93 7.54 -2.91 -0.02 2.91 16 9 C 0.04 2.41 2.71 -10.82 -0.03 2.38 16 10 H 0.00 -0.22 8.12 -2.38 -0.02 -0.24 16 11 C -0.08 -4.42 5.97 31.32 0.19 -4.23 16 12 C -0.11 -5.02 5.94 31.67 0.19 -4.83 16 13 C 0.06 2.89 2.57 46.28 0.12 3.01 16 14 H 0.08 3.72 4.57 -2.39 -0.01 3.71 16 15 N -0.60 -25.25 10.40 -304.00 -3.16 -28.41 16 16 C 0.22 6.89 6.93 43.61 0.30 7.19 16 17 C -0.22 -4.51 10.28 23.70 0.24 -4.27 16 18 C 0.14 1.08 11.13 83.25 0.93 2.01 16 19 N -0.59 -2.77 5.22 -195.38 -1.02 -3.79 16 20 H 0.44 -2.28 8.88 -92.71 -0.82 -3.10 16 21 C 0.17 2.15 10.92 83.24 0.91 3.06 16 22 C -0.23 -5.90 6.37 23.74 0.15 -5.75 16 23 Cl -0.06 -1.82 21.38 -2.72 -0.06 -1.88 16 24 C -0.09 -4.67 6.03 31.67 0.19 -4.48 16 25 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 26 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.03 1.63 7.48 -2.39 -0.02 1.61 16 28 H 0.07 2.99 5.73 -2.39 -0.01 2.98 16 29 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.22 -0.74 8.06 -2.91 -0.02 -0.76 16 32 H 0.20 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.04 2.26 7.66 -2.39 -0.02 2.24 16 34 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 Total: -1.00 -87.02 289.94 2.19 -84.83 By element: Atomic # 1 Polarization: -4.74 SS G_CDS: 0.30 Total: -4.44 kcal Atomic # 6 Polarization: -41.73 SS G_CDS: 3.83 Total: -37.90 kcal Atomic # 7 Polarization: -86.33 SS G_CDS: -3.90 Total: -90.23 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.61 kcal Atomic # 17 Polarization: -1.82 SS G_CDS: -0.06 Total: -1.88 kcal Total: -87.02 2.19 -84.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393423871.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.018 kcal (2) G-P(sol) polarization free energy of solvation -87.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds