Wall clock time and date at job start Mon Mar 30 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48500 * 109.46914 * 270.00132 * 3 2 1 5 5 H 1.48502 * 109.47088 * 29.99656 * 3 2 1 6 6 H 1.48499 * 109.47163 * 149.99663 * 3 2 1 7 7 C 1.37875 * 120.00208 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00472 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99666 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.67747 * 61.77737 * 9 7 2 11 11 C 1.54898 * 110.75578 * 298.53917 * 9 7 2 12 12 C 1.54255 * 104.19711 * 203.74549 * 11 9 7 13 13 C 1.53878 * 106.60028 * 23.61007 * 12 11 9 14 14 H 1.09004 * 110.02992 * 119.32969 * 13 12 11 15 15 N 1.46496 * 110.03346 * 240.71571 * 13 12 11 16 16 C 1.32217 * 119.99730 * 245.33566 * 15 13 12 17 17 C 1.46831 * 121.21298 * 354.35108 * 16 15 13 18 18 C 1.34682 * 118.55577 * 179.97438 * 17 16 15 19 19 N 1.35860 * 121.29645 * 0.02562 * 18 17 16 20 20 H 0.97003 * 118.60832 * 179.97438 * 19 18 17 21 21 C 1.36009 * 122.79551 * 359.71799 * 19 18 17 22 22 C 1.34732 * 121.24455 * 0.57760 * 21 19 18 23 23 Cl 1.73597 * 120.73479 * 179.71508 * 22 21 19 24 24 C 1.54269 * 106.59641 * 0.02562 * 13 12 11 25 25 H 0.96998 * 119.99653 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.48173 * 85.06637 * 11 9 7 27 27 H 1.08996 * 110.59556 * 322.48439 * 11 9 7 28 28 H 1.09006 * 110.03570 * 264.32462 * 12 11 9 29 29 H 1.09001 * 110.03245 * 142.89872 * 12 11 9 30 30 H 1.08001 * 120.71801 * 359.96181 * 17 16 15 31 31 H 1.08000 * 119.35210 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.37933 * 180.32175 * 21 19 18 33 33 H 1.09001 * 110.48569 * 95.06900 * 24 13 12 34 34 H 1.09005 * 110.48134 * 217.71089 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6413 -2.5915 -0.8982 11 6 0.3768 -2.6282 1.2727 12 6 0.1821 -4.1487 1.4453 13 6 1.3577 -4.8274 0.7205 14 1 1.9411 -5.4179 1.4271 15 7 0.8557 -5.6853 -0.3557 16 6 1.0241 -6.9951 -0.2899 17 6 1.8152 -7.6076 0.7848 18 6 1.9515 -8.9474 0.8004 19 7 1.3752 -9.7266 -0.1517 20 1 1.4990 -10.6875 -0.1030 21 6 0.6278 -9.2171 -1.1674 22 6 0.4267 -7.8906 -1.2899 23 17 -0.5235 -7.2541 -2.5958 24 6 2.2260 -3.6956 0.1334 25 1 -0.4849 0.8401 -0.0004 26 1 -0.5841 -2.1347 1.1268 27 1 0.8926 -2.2091 2.1365 28 1 -0.7619 -4.4577 0.9962 29 1 0.1955 -4.4090 2.5036 30 1 2.2779 -6.9969 1.5460 31 1 2.5310 -9.4114 1.5848 32 1 0.1906 -9.8883 -1.8918 33 1 3.0425 -3.4497 0.8125 34 1 2.6145 -3.9810 -0.8443 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393423875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:01 Heat of formation + Delta-G solvation = 13.642859 kcal Electronic energy + Delta-G solvation = -17476.878379 eV Core-core repulsion = 14627.527936 eV Total energy + Delta-G solvation = -2849.350443 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.81205 -39.06490 -37.26836 -35.87266 -34.19580 -32.24070 -31.02689 -29.87679 -28.33278 -25.91662 -24.06364 -23.08455 -21.12647 -20.32190 -19.88471 -18.48930 -17.37103 -17.21264 -16.58982 -16.23703 -15.52527 -15.29211 -15.10639 -14.83394 -14.18843 -13.82366 -13.56171 -13.15207 -13.03785 -12.94347 -12.77622 -12.68261 -12.33479 -12.01533 -11.71126 -11.54439 -11.43733 -11.33077 -10.94423 -10.79101 -10.46530 -10.24416 -9.66963 -8.12949 -8.03924 -6.21629 0.47654 0.67438 1.38775 1.39341 1.41276 1.52012 2.43036 2.43956 2.65091 3.19495 3.37532 3.86805 3.98360 4.20809 4.25417 4.28658 4.40836 4.61187 4.72012 4.86086 4.92327 5.01897 5.07911 5.11537 5.22644 5.25496 5.42798 5.50527 5.64265 5.69723 5.95563 6.03121 6.06000 6.40245 6.53738 6.89167 7.38089 7.45762 8.99603 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.004440 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.897388 B = 6305.427646 C = 6736.925433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.051 3.949 10 H -0.017 1.017 11 C -0.087 4.087 12 C -0.104 4.104 13 C 0.081 3.919 14 H 0.060 0.940 15 N -0.587 5.587 16 C 0.210 3.790 17 C -0.293 4.293 18 C 0.156 3.844 19 N -0.588 5.588 20 H 0.444 0.556 21 C 0.161 3.839 22 C -0.160 4.160 23 Cl -0.068 7.068 24 C -0.092 4.092 25 H 0.260 0.740 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.211 0.789 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.457 -27.358 2.199 27.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.785 3.215 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.071 0.929 9 C 0.033 3.967 10 H 0.001 0.999 11 C -0.125 4.125 12 C -0.142 4.142 13 C -0.029 4.029 14 H 0.078 0.922 15 N -0.303 5.303 16 C 0.031 3.969 17 C -0.320 4.320 18 C 0.028 3.972 19 N -0.198 5.198 20 H 0.285 0.715 21 C 0.031 3.969 22 C -0.196 4.196 23 Cl -0.039 7.039 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.228 0.772 32 H 0.224 0.776 33 H 0.077 0.923 34 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 2.875 -26.322 1.612 26.527 hybrid contribution 0.391 1.044 0.244 1.141 sum 3.266 -25.278 1.856 25.556 Atomic orbital electron populations 1.70149 1.07500 1.27125 1.51348 1.25867 0.95709 1.02711 0.94653 0.85530 0.78786 0.78936 0.78238 1.20224 1.20570 1.18835 1.21554 0.92916 0.92151 1.50833 0.92892 1.19401 0.92597 0.92119 0.92612 0.99890 1.22012 0.99198 0.93015 0.98324 1.22194 0.97455 0.95868 0.98640 1.22190 0.94910 0.93858 0.91984 0.92237 1.73275 1.27212 1.03693 1.26169 1.21775 0.92048 0.91249 0.91831 1.22459 1.09998 0.95969 1.03624 1.22005 0.92779 0.90819 0.91568 1.41002 1.44541 1.12094 1.22152 0.71505 1.21596 0.91258 0.92760 0.91272 1.21044 1.09049 0.92730 0.96754 1.98337 1.70836 1.87940 1.46832 1.22279 0.97369 0.95121 0.98242 0.93142 0.94757 0.94395 0.93969 0.91235 0.84234 0.77199 0.77642 0.92327 0.94884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.69 12.02 21.45 0.26 -58.43 16 2 C 0.01 0.54 5.33 84.65 0.45 0.99 16 3 Si 0.96 46.89 29.54 68.60 2.03 48.92 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 6 H -0.26 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -33.02 8.54 25.60 0.22 -32.80 16 8 H 0.05 3.16 7.78 -2.91 -0.02 3.14 16 9 C 0.05 3.02 2.83 -10.24 -0.03 2.99 16 10 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 11 C -0.09 -4.75 5.56 31.67 0.18 -4.58 16 12 C -0.10 -4.72 6.59 31.32 0.21 -4.51 16 13 C 0.08 3.51 3.49 45.72 0.16 3.67 16 14 H 0.06 2.22 5.32 -2.38 -0.01 2.21 16 15 N -0.59 -25.25 9.77 -306.64 -3.00 -28.24 16 16 C 0.21 6.84 6.97 43.61 0.30 7.14 16 17 C -0.29 -6.63 9.46 23.70 0.22 -6.41 16 18 C 0.16 1.53 11.13 83.25 0.93 2.46 16 19 N -0.59 -3.40 5.22 -195.38 -1.02 -4.42 16 20 H 0.44 -1.87 8.88 -92.71 -0.82 -2.70 16 21 C 0.16 1.99 10.92 83.24 0.91 2.90 16 22 C -0.16 -4.13 6.51 23.74 0.15 -3.98 16 23 Cl -0.07 -2.05 28.73 -2.72 -0.08 -2.13 16 24 C -0.09 -4.60 5.95 31.68 0.19 -4.41 16 25 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 26 H 0.03 2.04 7.37 -2.38 -0.02 2.02 16 27 H 0.04 2.04 8.04 -2.39 -0.02 2.03 16 28 H 0.04 2.01 7.92 -2.38 -0.02 1.99 16 29 H 0.07 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.14 3.29 5.95 -2.91 -0.02 3.27 16 31 H 0.21 -0.08 8.06 -2.91 -0.02 -0.10 16 32 H 0.21 0.83 8.06 -2.91 -0.02 0.81 16 33 H 0.06 2.77 8.04 -2.39 -0.02 2.75 16 34 H 0.03 1.68 8.04 -2.38 -0.02 1.66 16 Total: -1.00 -86.45 297.95 2.38 -84.07 By element: Atomic # 1 Polarization: -3.53 SS G_CDS: 0.29 Total: -3.24 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.89 Total: -36.54 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.76 Total: -91.09 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.08 Total: -2.13 kcal Total: -86.45 2.38 -84.07 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393423875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.716 kcal (2) G-P(sol) polarization free energy of solvation -86.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds