Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48495 * 109.47271 * 264.99574 * 3 2 1 5 5 H 1.48500 * 109.47112 * 144.99847 * 3 2 1 6 6 H 1.48493 * 109.47172 * 25.00009 * 3 2 1 7 7 C 1.37877 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00176 * 185.40868 * 7 2 1 9 9 C 1.50706 * 119.99667 * 5.40692 * 7 2 1 10 10 H 1.09000 * 110.67122 * 302.01249 * 9 7 2 11 11 C 1.54891 * 110.75465 * 65.25089 * 9 7 2 12 12 C 1.54266 * 104.19557 * 156.25721 * 11 9 7 13 13 C 1.53873 * 106.59513 * 336.38765 * 12 11 9 14 14 H 1.09005 * 110.03450 * 240.71389 * 13 12 11 15 15 N 1.46501 * 110.03275 * 119.33731 * 13 12 11 16 16 C 1.32217 * 120.00256 * 114.56389 * 15 13 12 17 17 C 1.46824 * 121.20913 * 5.41769 * 16 15 13 18 18 C 1.34689 * 118.55588 * 179.78814 * 17 16 15 19 19 N 1.35864 * 121.29193 * 0.51116 * 18 17 16 20 20 H 0.96998 * 118.60521 * 179.74523 * 19 18 17 21 21 C 1.35998 * 122.79292 * 359.71348 * 19 18 17 22 22 C 1.34728 * 121.25528 * 0.02797 * 21 19 18 23 23 Cl 1.73604 * 120.74210 * 179.97438 * 22 21 19 24 24 C 1.54268 * 106.60305 * 0.02562 * 13 12 11 25 25 H 0.96999 * 120.00764 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.48446 * 274.93277 * 11 9 7 27 27 H 1.08997 * 110.48941 * 37.44384 * 11 9 7 28 28 H 1.09003 * 110.03153 * 95.67011 * 12 11 9 29 29 H 1.09001 * 110.03038 * 217.10621 * 12 11 9 30 30 H 1.08000 * 120.72383 * 0.02836 * 17 16 15 31 31 H 1.08003 * 119.35273 * 180.22637 * 18 17 16 32 32 H 1.08007 * 119.37228 * 180.02562 * 21 19 18 33 33 H 1.09002 * 110.47981 * 264.93358 * 24 13 12 34 34 H 1.08998 * 110.48353 * 142.28697 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6023 1.9855 -1.3947 5 1 3.4898 1.4731 0.8031 6 1 1.3977 2.6809 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0810 -1.1961 0.0876 9 6 1.2561 -2.4962 -0.1241 10 1 0.5273 -2.5989 0.6799 11 6 0.5668 -2.6041 -1.5070 12 6 0.3954 -4.1213 -1.7270 13 6 1.4577 -4.8144 -0.8559 14 1 2.1331 -5.3964 -1.4831 15 7 0.8097 -5.6865 0.1269 16 6 0.9824 -6.9959 0.0644 17 6 1.9093 -7.5957 -0.9034 18 6 2.0472 -8.9354 -0.9178 19 7 1.3420 -9.7266 -0.0677 20 1 1.4688 -10.6871 -0.1142 21 6 0.4662 -9.2290 0.8461 22 6 0.2490 -7.9039 0.9567 23 17 -0.8725 -7.2832 2.1276 24 6 2.2372 -3.6943 -0.1365 25 1 -0.4851 0.8400 -0.0004 26 1 -0.4042 -2.1091 -1.4889 27 1 1.1993 -2.1731 -2.2831 28 1 -0.6023 -4.4330 -1.4178 29 1 0.5553 -4.3668 -2.7769 30 1 2.4713 -6.9759 -1.5864 31 1 2.7283 -9.3900 -1.6220 32 1 -0.0653 -9.9090 1.4954 33 1 3.1405 -3.4412 -0.6916 34 1 2.4853 -3.9953 0.8813 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393423880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = 37.904974 kcal Electronic energy + Delta-G solvation = -17469.094633 eV Core-core repulsion = 14620.796274 eV Total energy + Delta-G solvation = -2848.298359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.93504 -37.38992 -36.27114 -34.42784 -32.18065 -31.40170 -29.76787 -27.93319 -26.69497 -23.94764 -23.07766 -21.92335 -19.16818 -19.04860 -18.78893 -16.58459 -16.26545 -15.90169 -15.14842 -14.50630 -14.41878 -14.26935 -13.60001 -13.17113 -12.63214 -12.37980 -12.18188 -11.97496 -11.69058 -11.20770 -10.93296 -10.66479 -10.59732 -10.39313 -10.22684 -9.92531 -9.81550 -9.39785 -9.33463 -8.97618 -8.62263 -8.42037 -8.18748 -7.02563 -5.84784 -3.86286 1.37203 1.56681 2.27586 3.16190 3.40290 3.46139 3.49224 3.65958 4.32703 4.56762 4.57091 4.98894 5.14000 5.46849 5.54205 5.64970 5.77607 5.91939 5.95962 6.13796 6.42475 6.52366 6.78211 6.82335 6.88877 6.94455 7.06472 7.13754 7.22976 7.42715 7.53167 7.85960 8.08333 8.27940 8.52013 8.65210 9.17012 9.76104 11.25098 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031622 B = 0.004450 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.234001 B = 6290.686772 C = 6747.893141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.276 1.276 6 H -0.288 1.288 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.057 3.943 10 H 0.038 0.962 11 C -0.101 4.101 12 C -0.112 4.112 13 C 0.064 3.936 14 H 0.037 0.963 15 N -0.497 5.497 16 C 0.199 3.801 17 C -0.238 4.238 18 C 0.105 3.895 19 N -0.617 5.617 20 H 0.414 0.586 21 C 0.108 3.892 22 C -0.098 4.098 23 Cl -0.041 7.041 24 C -0.101 4.101 25 H 0.258 0.742 26 H 0.062 0.938 27 H 0.044 0.956 28 H 0.057 0.943 29 H 0.043 0.957 30 H 0.146 0.854 31 H 0.155 0.845 32 H 0.162 0.838 33 H 0.054 0.946 34 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -23.386 -1.598 23.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.201 1.201 6 H -0.214 1.214 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.038 3.962 10 H 0.056 0.944 11 C -0.140 4.140 12 C -0.150 4.150 13 C -0.046 4.046 14 H 0.055 0.945 15 N -0.209 5.209 16 C 0.016 3.984 17 C -0.266 4.266 18 C -0.020 4.020 19 N -0.227 5.227 20 H 0.248 0.752 21 C -0.019 4.019 22 C -0.134 4.134 23 Cl -0.012 7.012 24 C -0.139 4.139 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.061 0.939 30 H 0.163 0.837 31 H 0.172 0.828 32 H 0.179 0.821 33 H 0.072 0.928 34 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.247 -22.268 -1.044 22.328 hybrid contribution 0.968 0.266 -0.609 1.174 sum 2.215 -22.002 -1.653 22.175 Atomic orbital electron populations 1.69981 1.05851 1.26199 1.50704 1.24967 0.94747 0.98804 0.95308 0.86719 0.79889 0.83938 0.78077 1.20752 1.20085 1.21407 1.21177 0.93066 0.90927 1.49909 0.92897 1.19501 0.92787 0.90706 0.93164 0.94421 1.22290 1.01160 0.90543 0.99962 1.22280 0.98012 0.98622 0.96096 1.22576 0.95343 0.94236 0.92428 0.94526 1.73271 1.23491 1.01386 1.22769 1.21071 0.93325 0.91713 0.92274 1.22517 1.05385 0.93870 1.04791 1.21320 0.95216 0.92120 0.93338 1.40631 1.39040 1.10165 1.32895 0.75164 1.21012 0.93428 0.94187 0.93270 1.20932 1.01570 0.91271 0.99623 1.98358 1.59266 1.87830 1.55795 1.22440 0.98133 0.95242 0.98129 0.93226 0.91914 0.93733 0.92386 0.93862 0.83652 0.82766 0.82080 0.92783 0.93299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.11 12.55 55.43 0.70 -26.41 16 2 C 0.06 1.85 5.31 -17.82 -0.09 1.75 16 3 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.51 -15.01 8.50 -34.44 -0.29 -15.31 16 8 H 0.05 1.52 7.78 -52.48 -0.41 1.11 16 9 C 0.06 1.56 2.71 -89.79 -0.24 1.31 16 10 H 0.04 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.10 -2.56 5.77 -25.07 -0.14 -2.71 16 12 C -0.11 -2.41 6.60 -25.61 -0.17 -2.58 16 13 C 0.06 1.33 3.49 -66.81 -0.23 1.10 16 14 H 0.04 0.67 5.32 -51.93 -0.28 0.40 16 15 N -0.50 -10.15 9.77 -48.28 -0.47 -10.62 16 16 C 0.20 3.28 6.97 -80.72 -0.56 2.72 16 17 C -0.24 -3.00 9.46 -37.37 -0.35 -3.36 16 18 C 0.11 0.84 11.13 -17.02 -0.19 0.65 16 19 N -0.62 -3.91 5.22 -13.10 -0.07 -3.98 16 20 H 0.41 0.88 8.88 -40.82 -0.36 0.52 16 21 C 0.11 0.94 10.92 -16.95 -0.19 0.75 16 22 C -0.10 -1.35 6.51 -37.31 -0.24 -1.59 16 23 Cl -0.04 -0.61 28.73 -51.86 -1.49 -2.10 16 24 C -0.10 -2.38 5.95 -25.09 -0.15 -2.53 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.06 1.71 7.71 -51.93 -0.40 1.31 16 27 H 0.04 1.12 8.04 -51.93 -0.42 0.71 16 28 H 0.06 1.29 7.92 -51.93 -0.41 0.88 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.15 1.84 5.95 -52.49 -0.31 1.52 16 31 H 0.16 0.62 8.06 -52.48 -0.42 0.20 16 32 H 0.16 0.85 8.06 -52.48 -0.42 0.42 16 33 H 0.05 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.05 1.17 8.04 -51.93 -0.42 0.75 16 LS Contribution 298.85 15.07 4.50 4.50 Total: -1.00 -35.06 298.85 -8.96 -44.02 By element: Atomic # 1 Polarization: 1.38 SS G_CDS: -4.25 Total: -2.87 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.86 Total: -19.79 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.16 Total: -41.01 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.49 Total: -2.10 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -35.06 -8.96 -44.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393423880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.926 kcal (2) G-P(sol) polarization free energy of solvation -35.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds