Wall clock time and date at job start Mon Mar 30 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99868 * 2 1 4 4 H 1.48495 * 109.47271 * 264.99574 * 3 2 1 5 5 H 1.48500 * 109.47112 * 144.99847 * 3 2 1 6 6 H 1.48493 * 109.47172 * 25.00009 * 3 2 1 7 7 C 1.37877 * 120.00474 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00176 * 185.40868 * 7 2 1 9 9 C 1.50706 * 119.99667 * 5.40692 * 7 2 1 10 10 H 1.09000 * 110.67122 * 302.01249 * 9 7 2 11 11 C 1.54891 * 110.75465 * 65.25089 * 9 7 2 12 12 C 1.54266 * 104.19557 * 156.25721 * 11 9 7 13 13 C 1.53873 * 106.59513 * 336.38765 * 12 11 9 14 14 H 1.09005 * 110.03450 * 240.71389 * 13 12 11 15 15 N 1.46501 * 110.03275 * 119.33731 * 13 12 11 16 16 C 1.32217 * 120.00256 * 114.56389 * 15 13 12 17 17 C 1.46824 * 121.20913 * 5.41769 * 16 15 13 18 18 C 1.34689 * 118.55588 * 179.78814 * 17 16 15 19 19 N 1.35864 * 121.29193 * 0.51116 * 18 17 16 20 20 H 0.96998 * 118.60521 * 179.74523 * 19 18 17 21 21 C 1.35998 * 122.79292 * 359.71348 * 19 18 17 22 22 C 1.34728 * 121.25528 * 0.02797 * 21 19 18 23 23 Cl 1.73604 * 120.74210 * 179.97438 * 22 21 19 24 24 C 1.54268 * 106.60305 * 0.02562 * 13 12 11 25 25 H 0.96999 * 120.00764 * 0.02562 * 1 2 3 26 26 H 1.09005 * 110.48446 * 274.93277 * 11 9 7 27 27 H 1.08997 * 110.48941 * 37.44384 * 11 9 7 28 28 H 1.09003 * 110.03153 * 95.67011 * 12 11 9 29 29 H 1.09001 * 110.03038 * 217.10621 * 12 11 9 30 30 H 1.08000 * 120.72383 * 0.02836 * 17 16 15 31 31 H 1.08003 * 119.35273 * 180.22637 * 18 17 16 32 32 H 1.08007 * 119.37228 * 180.02562 * 21 19 18 33 33 H 1.09002 * 110.47981 * 264.93358 * 24 13 12 34 34 H 1.08998 * 110.48353 * 142.28697 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6023 1.9855 -1.3947 5 1 3.4898 1.4731 0.8031 6 1 1.3977 2.6809 0.5917 7 6 2.0045 -1.1940 -0.0005 8 1 3.0810 -1.1961 0.0876 9 6 1.2561 -2.4962 -0.1241 10 1 0.5273 -2.5989 0.6799 11 6 0.5668 -2.6041 -1.5070 12 6 0.3954 -4.1213 -1.7270 13 6 1.4577 -4.8144 -0.8559 14 1 2.1331 -5.3964 -1.4831 15 7 0.8097 -5.6865 0.1269 16 6 0.9824 -6.9959 0.0644 17 6 1.9093 -7.5957 -0.9034 18 6 2.0472 -8.9354 -0.9178 19 7 1.3420 -9.7266 -0.0677 20 1 1.4688 -10.6871 -0.1142 21 6 0.4662 -9.2290 0.8461 22 6 0.2490 -7.9039 0.9567 23 17 -0.8725 -7.2832 2.1276 24 6 2.2372 -3.6943 -0.1365 25 1 -0.4851 0.8400 -0.0004 26 1 -0.4042 -2.1091 -1.4889 27 1 1.1993 -2.1731 -2.2831 28 1 -0.6023 -4.4330 -1.4178 29 1 0.5553 -4.3668 -2.7769 30 1 2.4713 -6.9759 -1.5864 31 1 2.7283 -9.3900 -1.6220 32 1 -0.0653 -9.9090 1.4954 33 1 3.1405 -3.4412 -0.6916 34 1 2.4853 -3.9953 0.8813 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393423880.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:22:03 Heat of formation + Delta-G solvation = 13.084583 kcal Electronic energy + Delta-G solvation = -17470.170926 eV Core-core repulsion = 14620.796274 eV Total energy + Delta-G solvation = -2849.374652 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 266.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.81243 -39.06762 -37.26765 -35.86573 -34.21123 -32.24004 -31.03970 -29.87121 -28.35458 -25.91133 -24.06404 -23.08554 -21.14221 -20.32301 -19.88491 -18.50309 -17.37312 -17.21012 -16.59734 -16.23598 -15.52310 -15.29370 -15.09918 -14.83224 -14.18085 -13.83760 -13.57982 -13.15309 -13.04333 -13.00302 -12.74532 -12.64088 -12.35386 -12.02158 -11.72191 -11.55026 -11.45818 -11.31653 -10.94630 -10.82468 -10.45904 -10.24347 -9.66684 -8.13247 -8.04686 -6.21391 0.47679 0.67514 1.38838 1.39299 1.41643 1.51514 2.43104 2.44003 2.65148 3.18954 3.37598 3.86813 3.97720 4.20006 4.25462 4.28172 4.40466 4.61155 4.71320 4.85717 4.92338 5.00593 5.07354 5.11314 5.21752 5.24786 5.41298 5.49217 5.62790 5.69463 5.92646 6.02199 6.05988 6.40543 6.53786 6.89790 7.38328 7.45663 8.99580 Molecular weight = 266.09amu Principal moments of inertia in cm(-1) A = 0.031622 B = 0.004450 C = 0.004148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.234001 B = 6290.686772 C = 6747.893141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.009 3.991 3 Si 0.960 3.040 4 H -0.269 1.269 5 H -0.267 1.267 6 H -0.283 1.283 7 C -0.536 4.536 8 H 0.053 0.947 9 C 0.052 3.948 10 H -0.015 1.015 11 C -0.092 4.092 12 C -0.102 4.102 13 C 0.081 3.919 14 H 0.061 0.939 15 N -0.588 5.588 16 C 0.210 3.790 17 C -0.292 4.292 18 C 0.156 3.844 19 N -0.588 5.588 20 H 0.444 0.556 21 C 0.161 3.839 22 C -0.160 4.160 23 Cl -0.068 7.068 24 C -0.092 4.092 25 H 0.260 0.740 26 H 0.029 0.971 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.212 0.788 32 H 0.207 0.793 33 H 0.059 0.941 34 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.787 -27.353 -2.770 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.784 3.216 4 H -0.195 1.195 5 H -0.192 1.192 6 H -0.209 1.209 7 C -0.574 4.574 8 H 0.072 0.928 9 C 0.033 3.967 10 H 0.003 0.997 11 C -0.130 4.130 12 C -0.140 4.140 13 C -0.030 4.030 14 H 0.078 0.922 15 N -0.304 5.304 16 C 0.031 3.969 17 C -0.320 4.320 18 C 0.028 3.972 19 N -0.198 5.198 20 H 0.285 0.715 21 C 0.031 3.969 22 C -0.196 4.196 23 Cl -0.040 7.040 24 C -0.130 4.130 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.228 0.772 32 H 0.223 0.777 33 H 0.077 0.923 34 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 3.126 -26.325 -2.225 26.603 hybrid contribution 0.413 1.049 -0.210 1.147 sum 3.539 -25.275 -2.435 25.638 Atomic orbital electron populations 1.70146 1.07609 1.27218 1.51323 1.25868 0.95636 1.02754 0.94627 0.85555 0.78542 0.78823 0.78654 1.19468 1.19193 1.20905 1.21548 0.93284 0.92247 1.50335 0.92831 1.19388 0.92737 0.92102 0.92470 0.99682 1.22067 0.98853 0.93428 0.98657 1.22168 0.98030 0.95598 0.98214 1.22192 0.94586 0.93763 0.92418 0.92159 1.73281 1.28438 1.03390 1.25289 1.21772 0.91963 0.91274 0.91892 1.22461 1.07313 0.96041 1.06218 1.22013 0.92863 0.90636 0.91670 1.41000 1.36329 1.11973 1.30483 0.71506 1.21591 0.90811 0.92935 0.91552 1.21048 1.04207 0.92745 1.01594 1.98338 1.60314 1.88505 1.56814 1.22273 0.97725 0.95174 0.97873 0.93122 0.95238 0.93975 0.93972 0.91062 0.84190 0.77183 0.77658 0.92253 0.94962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.18 12.55 21.45 0.27 -58.91 16 2 C 0.01 0.57 5.31 84.66 0.45 1.02 16 3 Si 0.96 46.87 29.54 68.60 2.03 48.90 16 4 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 6 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 7 C -0.54 -32.96 8.50 25.60 0.22 -32.74 16 8 H 0.05 3.19 7.78 -2.91 -0.02 3.17 16 9 C 0.05 3.03 2.71 -10.26 -0.03 3.01 16 10 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 11 C -0.09 -4.95 5.77 31.67 0.18 -4.77 16 12 C -0.10 -4.61 6.60 31.32 0.21 -4.40 16 13 C 0.08 3.49 3.49 45.72 0.16 3.65 16 14 H 0.06 2.23 5.32 -2.38 -0.01 2.22 16 15 N -0.59 -25.27 9.77 -306.65 -3.00 -28.27 16 16 C 0.21 6.83 6.97 43.61 0.30 7.14 16 17 C -0.29 -6.59 9.46 23.70 0.22 -6.37 16 18 C 0.16 1.52 11.13 83.25 0.93 2.44 16 19 N -0.59 -3.39 5.22 -195.37 -1.02 -4.41 16 20 H 0.44 -1.88 8.88 -92.71 -0.82 -2.70 16 21 C 0.16 2.00 10.92 83.24 0.91 2.91 16 22 C -0.16 -4.15 6.51 23.74 0.15 -3.99 16 23 Cl -0.07 -2.07 28.73 -2.72 -0.08 -2.15 16 24 C -0.09 -4.61 5.95 31.66 0.19 -4.42 16 25 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 26 H 0.03 1.72 7.71 -2.38 -0.02 1.71 16 27 H 0.04 2.23 8.04 -2.39 -0.02 2.21 16 28 H 0.04 2.00 7.92 -2.39 -0.02 1.98 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.14 3.27 5.95 -2.91 -0.02 3.25 16 31 H 0.21 -0.10 8.06 -2.91 -0.02 -0.12 16 32 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 33 H 0.06 2.79 8.04 -2.39 -0.02 2.77 16 34 H 0.03 1.65 8.04 -2.39 -0.02 1.63 16 Total: -1.00 -86.85 298.85 2.39 -84.46 By element: Atomic # 1 Polarization: -3.38 SS G_CDS: 0.29 Total: -3.09 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 3.90 Total: -36.54 kcal Atomic # 7 Polarization: -87.84 SS G_CDS: -3.75 Total: -91.59 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Atomic # 17 Polarization: -2.07 SS G_CDS: -0.08 Total: -2.15 kcal Total: -86.85 2.39 -84.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393423880.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.544 kcal (2) G-P(sol) polarization free energy of solvation -86.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds