Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38425 * 122.53605 * 2 1 4 4 C 1.33392 * 114.91682 * 179.76085 * 3 2 1 5 5 S 1.75881 * 109.59550 * 0.47737 * 4 3 2 6 6 C 1.33393 * 122.54114 * 180.28663 * 2 1 3 7 7 C 1.50697 * 125.20166 * 0.02562 * 6 2 1 8 8 C 1.52995 * 110.27624 * 303.94096 * 7 6 2 9 9 C 1.54952 * 110.30788 * 66.13699 * 7 6 2 10 10 C 1.55300 * 100.94006 * 155.35826 * 9 7 6 11 11 C 1.54392 * 102.25454 * 325.86664 * 10 9 7 12 12 C 1.53000 * 109.82849 * 261.84273 * 11 10 9 13 13 C 1.50700 * 109.82838 * 140.87244 * 11 10 9 14 14 H 1.07993 * 120.00226 * 0.41135 * 13 11 10 15 15 C 1.37878 * 119.99482 * 180.41496 * 13 11 10 16 16 N 1.31516 * 120.00097 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99951 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46977 * 59.99409 * 17 15 13 19 19 H 1.48494 * 109.47135 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46866 * 299.99929 * 17 15 13 21 21 O 1.43232 * 107.58487 * 21.35530 * 11 10 9 22 22 H 1.09001 * 109.47138 * 264.27357 * 1 2 3 23 23 H 1.09003 * 109.47144 * 144.27614 * 1 2 3 24 24 H 1.08996 * 109.47636 * 24.27296 * 1 2 3 25 25 H 1.07994 * 122.54268 * 0.02562 * 3 2 1 26 26 H 1.08007 * 125.20156 * 180.20721 * 4 3 2 27 27 H 1.09001 * 109.47451 * 66.45600 * 8 7 6 28 28 H 1.09000 * 109.46982 * 186.45724 * 8 7 6 29 29 H 1.09007 * 109.46882 * 306.45445 * 8 7 6 30 30 H 1.09001 * 111.12368 * 273.27853 * 9 7 6 31 31 H 1.09004 * 111.12365 * 37.43972 * 9 7 6 32 32 H 1.08998 * 110.85182 * 207.67577 * 10 9 7 33 33 H 1.09000 * 110.84857 * 84.05795 * 10 9 7 34 34 H 1.09002 * 109.46967 * 179.58443 * 12 11 10 35 35 H 1.09000 * 109.47126 * 299.58600 * 12 11 10 36 36 H 1.09001 * 109.47006 * 59.59037 * 12 11 10 37 37 H 0.97002 * 119.99942 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2514 1.1670 0.0000 4 6 3.5736 0.9901 0.0050 5 16 3.9386 -0.7304 -0.0036 6 6 2.2245 -1.1245 -0.0056 7 6 1.6537 -2.5192 -0.0132 8 6 0.7108 -2.7126 1.1761 9 6 0.9064 -2.7872 -1.3438 10 6 0.9901 -4.3360 -1.4220 11 6 2.3651 -4.6227 -0.7811 12 6 3.4163 -4.8213 -1.8749 13 6 2.2807 -5.8571 0.0793 14 1 1.3478 -6.3948 0.1621 15 6 3.3945 -6.2998 0.7607 16 7 4.5307 -5.6452 0.6595 17 14 3.2899 -7.8295 1.8278 18 1 2.8962 -8.9910 0.9905 19 1 4.6132 -8.0917 2.4483 20 1 2.2766 -7.6213 2.8932 21 8 2.7110 -3.4908 0.0255 22 1 -0.3633 -0.1025 1.0225 23 1 -0.3633 -0.8343 -0.6000 24 1 -0.3634 0.9367 -0.4224 25 1 1.7964 2.1464 0.0004 26 1 4.3077 1.7824 0.0090 27 1 -0.1640 -2.0739 1.0539 28 1 0.3958 -3.7550 1.2242 29 1 1.2290 -2.4467 2.0976 30 1 -0.1292 -2.4521 -1.2872 31 1 1.4222 -2.3230 -2.1844 32 1 0.9670 -4.6740 -2.4580 33 1 0.1891 -4.7974 -0.8444 34 1 4.3857 -5.0159 -1.4162 35 1 3.1339 -5.6678 -2.5008 36 1 3.4781 -3.9215 -2.4870 37 1 5.3144 -5.9569 1.1386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393744317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = -15.616250 kcal Electronic energy + Delta-G solvation = -19139.149346 eV Core-core repulsion = 16394.114182 eV Total energy + Delta-G solvation = -2745.035164 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.28795 -37.46455 -33.42427 -31.69434 -31.02451 -29.54561 -27.43806 -27.05973 -25.26392 -23.39809 -22.22884 -20.36749 -19.33511 -17.56920 -16.90093 -16.43831 -14.99888 -14.75090 -14.35915 -13.91980 -13.67578 -13.44772 -12.96377 -12.68481 -12.32353 -12.04017 -11.86374 -11.73820 -11.50641 -11.42151 -11.26890 -11.00112 -10.86618 -10.63834 -10.43008 -10.37355 -10.35119 -9.98092 -9.86377 -9.52293 -9.06822 -8.45821 -8.16079 -7.90250 -7.78378 -5.92183 -4.08701 1.47668 2.18276 2.63980 3.06819 3.32559 3.37954 3.39838 4.44070 4.78707 5.23840 5.30571 5.42928 5.47587 5.59951 5.68919 5.75439 5.82730 5.84610 6.02193 6.13980 6.19872 6.22134 6.38314 6.45648 6.53995 6.62541 6.66665 6.71326 6.87340 6.91518 6.96508 7.04021 7.15033 7.43919 7.80997 8.11350 8.38516 8.63792 9.05617 9.62416 11.09445 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.007036 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.693211 B = 3978.694864 C = 4296.897113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.131 4.131 3 C -0.130 4.130 4 C -0.254 4.254 5 S 0.159 5.841 6 C -0.145 4.145 7 C 0.169 3.831 8 C -0.150 4.150 9 C -0.139 4.139 10 C -0.140 4.140 11 C 0.231 3.769 12 C -0.139 4.139 13 C -0.534 4.534 14 H 0.057 0.943 15 C 0.083 3.917 16 N -0.858 5.858 17 Si 0.885 3.115 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.277 1.277 21 O -0.339 6.339 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.128 0.872 26 H 0.155 0.845 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.036 0.964 36 H 0.011 0.989 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.457 10.504 -2.272 12.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C -0.161 4.161 4 C -0.389 4.389 5 S 0.427 5.573 6 C -0.263 4.263 7 C 0.126 3.874 8 C -0.208 4.208 9 C -0.178 4.178 10 C -0.178 4.178 11 C 0.194 3.806 12 C -0.197 4.197 13 C -0.571 4.571 14 H 0.075 0.925 15 C -0.122 4.122 16 N -0.494 5.494 17 Si 0.713 3.287 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 O -0.258 6.258 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.146 0.854 26 H 0.172 0.828 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.030 0.970 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.645 9.689 -2.108 10.564 hybrid contribution -1.393 0.103 0.566 1.507 sum -5.038 9.792 -1.542 11.120 Atomic orbital electron populations 1.20645 0.90562 1.02102 1.01938 1.18596 0.97018 0.91358 1.07312 1.19860 0.92906 0.98511 1.04859 1.25737 0.99716 1.01167 1.12321 1.84859 1.05597 0.96366 1.70528 1.24723 0.96190 0.98461 1.06948 1.20322 0.88662 0.84246 0.94175 1.22191 0.98138 1.02601 0.97880 1.23249 0.99665 0.97742 0.97100 1.23240 1.00812 0.93154 1.00591 1.19622 0.88072 0.84760 0.88162 1.21975 1.04045 0.96871 0.96771 1.21201 0.96422 1.09295 1.30213 0.92461 1.24976 0.95397 0.96089 0.95786 1.69940 1.00475 1.38292 1.40724 0.86793 0.77242 0.83693 0.80973 1.20282 1.21271 1.20277 1.88781 1.37941 1.28434 1.70664 0.91656 0.91129 0.92411 0.85370 0.82758 0.92693 0.90987 0.92728 0.91366 0.91565 0.92098 0.91553 0.89170 0.94540 0.96993 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.21 8.32 36.00 0.30 -0.92 16 2 C -0.13 -2.09 5.69 -106.25 -0.60 -2.69 16 3 C -0.13 -1.89 9.96 -41.21 -0.41 -2.30 16 4 C -0.25 -3.78 11.23 29.04 0.33 -3.45 16 5 S 0.16 2.92 22.70 -107.50 -2.44 0.48 16 6 C -0.14 -2.71 5.23 -36.00 -0.19 -2.90 16 7 C 0.17 3.40 0.85 -90.75 -0.08 3.32 16 8 C -0.15 -2.81 8.44 37.15 0.31 -2.49 16 9 C -0.14 -2.53 5.30 -24.48 -0.13 -2.66 16 10 C -0.14 -2.86 5.71 -24.78 -0.14 -3.00 16 11 C 0.23 5.65 0.81 -91.04 -0.07 5.58 16 12 C -0.14 -3.38 8.51 37.16 0.32 -3.07 16 13 C -0.53 -14.36 8.22 -34.44 -0.28 -14.65 16 14 H 0.06 1.52 7.52 -52.49 -0.39 1.12 16 15 C 0.08 2.28 5.26 -17.82 -0.09 2.18 16 16 N -0.86 -24.42 10.93 55.43 0.61 -23.82 16 17 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 21 O -0.34 -8.41 8.97 -35.23 -0.32 -8.73 16 22 H 0.06 0.80 7.40 -51.93 -0.38 0.42 16 23 H 0.07 0.92 4.79 -51.93 -0.25 0.67 16 24 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 25 H 0.13 1.52 8.06 -52.49 -0.42 1.09 16 26 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 27 H 0.05 0.84 5.31 -51.93 -0.28 0.57 16 28 H 0.07 1.44 7.68 -51.93 -0.40 1.04 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.05 6.21 -51.93 -0.32 0.73 16 31 H 0.07 1.21 8.05 -51.93 -0.42 0.79 16 32 H 0.06 1.16 7.82 -51.93 -0.41 0.75 16 33 H 0.07 1.33 7.44 -51.93 -0.39 0.94 16 34 H 0.09 2.44 6.05 -51.93 -0.31 2.12 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 302.23 15.07 4.55 4.55 Total: -1.00 -29.07 302.23 -8.58 -37.65 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -5.22 Total: 0.82 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -0.75 Total: -27.04 kcal Atomic # 7 Polarization: -24.42 SS G_CDS: 0.61 Total: -23.82 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.32 Total: -8.73 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -2.44 Total: 0.48 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.07 -8.58 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393744317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.034 kcal (2) G-P(sol) polarization free energy of solvation -29.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds