Wall clock time and date at job start Mon Mar 30 2020 06:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38425 * 122.53605 * 2 1 4 4 C 1.33392 * 114.91682 * 179.76085 * 3 2 1 5 5 S 1.75881 * 109.59550 * 0.47737 * 4 3 2 6 6 C 1.33393 * 122.54114 * 180.28663 * 2 1 3 7 7 C 1.50697 * 125.20166 * 0.02562 * 6 2 1 8 8 C 1.52995 * 110.27624 * 303.94096 * 7 6 2 9 9 C 1.54952 * 110.30788 * 66.13699 * 7 6 2 10 10 C 1.55300 * 100.94006 * 155.35826 * 9 7 6 11 11 C 1.54392 * 102.25454 * 325.86664 * 10 9 7 12 12 C 1.53000 * 109.82849 * 261.84273 * 11 10 9 13 13 C 1.50700 * 109.82838 * 140.87244 * 11 10 9 14 14 H 1.07993 * 120.00226 * 0.41135 * 13 11 10 15 15 C 1.37878 * 119.99482 * 180.41496 * 13 11 10 16 16 N 1.31516 * 120.00097 * 359.97438 * 15 13 11 17 17 Si 1.86803 * 119.99951 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.46977 * 59.99409 * 17 15 13 19 19 H 1.48494 * 109.47135 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.46866 * 299.99929 * 17 15 13 21 21 O 1.43232 * 107.58487 * 21.35530 * 11 10 9 22 22 H 1.09001 * 109.47138 * 264.27357 * 1 2 3 23 23 H 1.09003 * 109.47144 * 144.27614 * 1 2 3 24 24 H 1.08996 * 109.47636 * 24.27296 * 1 2 3 25 25 H 1.07994 * 122.54268 * 0.02562 * 3 2 1 26 26 H 1.08007 * 125.20156 * 180.20721 * 4 3 2 27 27 H 1.09001 * 109.47451 * 66.45600 * 8 7 6 28 28 H 1.09000 * 109.46982 * 186.45724 * 8 7 6 29 29 H 1.09007 * 109.46882 * 306.45445 * 8 7 6 30 30 H 1.09001 * 111.12368 * 273.27853 * 9 7 6 31 31 H 1.09004 * 111.12365 * 37.43972 * 9 7 6 32 32 H 1.08998 * 110.85182 * 207.67577 * 10 9 7 33 33 H 1.09000 * 110.84857 * 84.05795 * 10 9 7 34 34 H 1.09002 * 109.46967 * 179.58443 * 12 11 10 35 35 H 1.09000 * 109.47126 * 299.58600 * 12 11 10 36 36 H 1.09001 * 109.47006 * 59.59037 * 12 11 10 37 37 H 0.97002 * 119.99942 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2514 1.1670 0.0000 4 6 3.5736 0.9901 0.0050 5 16 3.9386 -0.7304 -0.0036 6 6 2.2245 -1.1245 -0.0056 7 6 1.6537 -2.5192 -0.0132 8 6 0.7108 -2.7126 1.1761 9 6 0.9064 -2.7872 -1.3438 10 6 0.9901 -4.3360 -1.4220 11 6 2.3651 -4.6227 -0.7811 12 6 3.4163 -4.8213 -1.8749 13 6 2.2807 -5.8571 0.0793 14 1 1.3478 -6.3948 0.1621 15 6 3.3945 -6.2998 0.7607 16 7 4.5307 -5.6452 0.6595 17 14 3.2899 -7.8295 1.8278 18 1 2.8962 -8.9910 0.9905 19 1 4.6132 -8.0917 2.4483 20 1 2.2766 -7.6213 2.8932 21 8 2.7110 -3.4908 0.0255 22 1 -0.3633 -0.1025 1.0225 23 1 -0.3633 -0.8343 -0.6000 24 1 -0.3634 0.9367 -0.4224 25 1 1.7964 2.1464 0.0004 26 1 4.3077 1.7824 0.0090 27 1 -0.1640 -2.0739 1.0539 28 1 0.3958 -3.7550 1.2242 29 1 1.2290 -2.4467 2.0976 30 1 -0.1292 -2.4521 -1.2872 31 1 1.4222 -2.3230 -2.1844 32 1 0.9670 -4.6740 -2.4580 33 1 0.1891 -4.7974 -0.8444 34 1 4.3857 -5.0159 -1.4162 35 1 3.1339 -5.6678 -2.5008 36 1 3.4781 -3.9215 -2.4870 37 1 5.3144 -5.9569 1.1386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393744317.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:19 Heat of formation + Delta-G solvation = -31.189647 kcal Electronic energy + Delta-G solvation = -19139.824659 eV Core-core repulsion = 16394.114182 eV Total energy + Delta-G solvation = -2745.710477 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.82728 -38.82613 -35.24416 -33.33986 -32.77822 -30.85268 -29.02473 -28.40413 -27.27521 -24.95893 -23.49871 -21.84123 -21.13237 -18.83762 -18.42974 -18.25564 -16.68656 -16.41027 -15.86022 -15.47788 -15.08363 -14.87986 -14.31892 -14.22936 -13.79257 -13.62879 -13.45205 -13.15059 -13.09758 -12.84096 -12.72391 -12.67358 -12.57876 -12.43251 -12.20711 -11.97234 -11.81902 -11.67958 -11.26401 -11.21111 -10.87078 -10.52888 -9.82652 -9.34440 -9.13940 -7.98154 -6.20829 0.22706 0.88750 1.39032 1.41473 1.42328 1.49211 1.89552 2.44768 3.10170 3.51834 3.86749 3.97379 4.16041 4.20859 4.45880 4.50828 4.61128 4.65530 4.72463 4.77149 4.81093 4.88262 4.98284 4.98459 5.08026 5.12529 5.16989 5.22009 5.24606 5.31482 5.50155 5.52284 5.66571 5.73825 5.82305 6.13369 6.37815 6.71394 7.18127 7.54792 9.01692 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.007036 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.693211 B = 3978.694864 C = 4296.897113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.114 4.114 3 C -0.131 4.131 4 C -0.230 4.230 5 S 0.068 5.932 6 C -0.176 4.176 7 C 0.159 3.841 8 C -0.143 4.143 9 C -0.125 4.125 10 C -0.136 4.136 11 C 0.218 3.782 12 C -0.131 4.131 13 C -0.547 4.547 14 H 0.055 0.945 15 C 0.035 3.965 16 N -0.888 5.888 17 Si 0.943 3.057 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.275 1.275 21 O -0.370 6.370 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.168 0.832 26 H 0.184 0.816 27 H 0.092 0.908 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.102 0.898 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 12.495 -2.517 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.127 4.127 3 C -0.162 4.162 4 C -0.365 4.365 5 S 0.335 5.665 6 C -0.293 4.293 7 C 0.117 3.883 8 C -0.201 4.201 9 C -0.164 4.164 10 C -0.174 4.174 11 C 0.181 3.819 12 C -0.189 4.189 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.168 4.168 16 N -0.525 5.525 17 Si 0.769 3.231 18 H -0.193 1.193 19 H -0.214 1.214 20 H -0.201 1.201 21 O -0.291 6.291 22 H 0.094 0.906 23 H 0.089 0.911 24 H 0.105 0.895 25 H 0.185 0.815 26 H 0.202 0.798 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.120 0.880 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.040 0.960 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.991 11.677 -2.358 13.335 hybrid contribution -0.702 -0.390 0.639 1.026 sum -6.693 11.287 -1.719 13.235 Atomic orbital electron populations 1.20771 0.88106 1.03802 1.02868 1.19078 0.98734 0.90748 1.04122 1.20283 0.92565 0.99672 1.03641 1.26002 1.00781 0.98854 1.10909 1.85140 1.07846 1.00793 1.72763 1.24575 0.95575 0.98488 1.10680 1.20546 0.88103 0.84254 0.95375 1.22144 0.99090 1.02111 0.96798 1.23194 1.01356 0.95812 0.95996 1.23140 0.98351 0.95078 1.00818 1.19657 0.90029 0.84344 0.87900 1.21859 1.02646 0.97414 0.96989 1.21594 0.96150 1.10451 1.30275 0.92686 1.25681 0.95233 0.98717 0.97136 1.70108 1.00914 1.39754 1.41724 0.85881 0.76974 0.80818 0.79457 1.19333 1.21375 1.20093 1.88718 1.40146 1.29296 1.70893 0.90593 0.91059 0.89486 0.81488 0.79826 0.88982 0.92915 0.94420 0.87955 0.91751 0.90902 0.91426 0.92403 0.94019 0.96020 0.93546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.06 8.32 71.23 0.59 -1.46 16 2 C -0.11 -3.28 5.69 -20.92 -0.12 -3.40 16 3 C -0.13 -3.30 9.96 21.22 0.21 -3.09 16 4 C -0.23 -6.30 11.23 66.72 0.75 -5.55 16 5 S 0.07 2.54 22.70 -56.49 -1.28 1.25 16 6 C -0.18 -6.39 5.23 24.59 0.13 -6.26 16 7 C 0.16 6.31 0.85 -10.88 -0.01 6.30 16 8 C -0.14 -5.24 8.44 71.98 0.61 -4.63 16 9 C -0.13 -4.32 5.30 32.05 0.17 -4.15 16 10 C -0.14 -5.42 5.71 31.86 0.18 -5.23 16 11 C 0.22 10.84 0.81 -11.07 -0.01 10.83 16 12 C -0.13 -6.57 8.51 71.98 0.61 -5.96 16 13 C -0.55 -29.99 8.22 25.60 0.21 -29.77 16 14 H 0.05 2.94 7.52 -2.91 -0.02 2.92 16 15 C 0.03 1.94 5.26 84.65 0.45 2.38 16 16 N -0.89 -52.54 10.93 21.45 0.23 -52.31 16 17 Si 0.94 44.21 29.54 68.60 2.03 46.23 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 20 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 21 O -0.37 -18.88 8.97 -148.98 -1.34 -20.22 16 22 H 0.08 1.50 7.40 -2.39 -0.02 1.49 16 23 H 0.07 1.52 4.79 -2.39 -0.01 1.51 16 24 H 0.09 1.38 8.10 -2.39 -0.02 1.36 16 25 H 0.17 2.96 8.06 -2.91 -0.02 2.93 16 26 H 0.18 3.83 8.06 -2.91 -0.02 3.81 16 27 H 0.09 2.58 5.31 -2.39 -0.01 2.57 16 28 H 0.05 2.09 7.68 -2.39 -0.02 2.08 16 29 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 30 H 0.10 2.79 6.21 -2.39 -0.01 2.77 16 31 H 0.06 2.24 8.05 -2.38 -0.02 2.22 16 32 H 0.07 2.67 7.82 -2.39 -0.02 2.65 16 33 H 0.07 2.64 7.44 -2.39 -0.02 2.62 16 34 H 0.06 3.26 6.05 -2.39 -0.01 3.25 16 35 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -65.29 302.23 4.47 -60.82 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: 1.06 Total: 14.22 kcal Atomic # 6 Polarization: -53.77 SS G_CDS: 3.77 Total: -50.00 kcal Atomic # 7 Polarization: -52.54 SS G_CDS: 0.23 Total: -52.31 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -1.34 Total: -20.22 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: 2.54 SS G_CDS: -1.28 Total: 1.25 kcal Total: -65.29 4.47 -60.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393744317.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.627 kcal (2) G-P(sol) polarization free energy of solvation -65.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds