Wall clock time and date at job start Mon Mar 30 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 S 1.76202 * 120.00249 * 179.97438 * 5 4 3 7 7 O 1.42101 * 103.00004 * 203.84780 * 6 5 4 8 8 C 1.81393 * 103.00197 * 89.99703 * 6 5 4 9 9 C 1.53003 * 109.47449 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47270 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46898 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47279 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99996 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00621 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99328 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00467 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47066 * 120.00003 * 16 14 12 19 19 H 1.48497 * 109.47051 * 240.00065 * 16 14 12 20 20 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 21 21 C 1.38233 * 120.00012 * 359.96176 * 20 5 4 22 22 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 23 23 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 24 24 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.09008 * 109.47248 * 300.00312 * 8 6 5 28 28 H 1.08997 * 109.47616 * 59.99698 * 8 6 5 29 29 H 1.09000 * 109.46460 * 300.00342 * 9 8 6 30 30 H 1.09002 * 109.46661 * 59.99510 * 9 8 6 31 31 H 1.09004 * 109.46896 * 299.99464 * 10 9 8 32 32 H 1.08993 * 109.47307 * 59.99721 * 10 9 8 33 33 H 1.08995 * 109.47286 * 299.99866 * 11 10 9 34 34 H 1.09005 * 109.47324 * 60.00118 * 11 10 9 35 35 H 0.97007 * 120.00049 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.99672 * 179.97438 * 20 5 4 37 37 H 1.08004 * 119.99493 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 16 6.0337 -0.0001 0.0122 7 8 6.3554 -1.2652 -0.5494 8 6 6.4351 -0.0042 1.7812 9 6 7.9547 -0.0040 1.9594 10 6 8.2932 -0.0082 3.4514 11 6 9.8128 -0.0086 3.6295 12 6 10.1464 -0.0120 5.0991 13 1 9.3538 -0.0142 5.8328 14 6 11.4634 -0.0136 5.5073 15 7 12.4285 -0.0115 4.6139 16 14 11.8767 -0.0185 7.3289 17 1 10.6209 -0.0209 8.1214 18 1 12.6686 -1.2322 7.6535 19 1 12.6693 1.1928 7.6599 20 6 3.5805 -1.1972 0.0001 21 6 2.1981 -1.1972 -0.0042 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.1205 2.1324 0.0100 27 1 6.0144 0.8847 2.2513 28 1 6.0144 -0.8952 2.2472 29 1 8.3757 -0.8927 1.4891 30 1 8.3750 0.8872 1.4934 31 1 7.8722 0.8804 3.9219 32 1 7.8729 -0.8996 3.9169 33 1 10.2336 -0.8972 3.1591 34 1 10.2336 0.8827 3.1639 35 1 13.3551 -0.0129 4.9010 36 1 4.1205 -2.1325 -0.0005 37 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395394048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:16 Heat of formation + Delta-G solvation = -44.045039 kcal Electronic energy + Delta-G solvation = -16768.247256 eV Core-core repulsion = 14021.979328 eV Total energy + Delta-G solvation = -2746.267928 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.40946 -35.65622 -35.12568 -33.12108 -32.61142 -31.17431 -29.45754 -27.37922 -25.22277 -22.98032 -22.22206 -21.60399 -20.09323 -18.12500 -16.65412 -16.19142 -15.71007 -15.41219 -15.02573 -14.83105 -14.38360 -14.10369 -14.04917 -13.67823 -13.10590 -12.71350 -12.60882 -12.38292 -12.14027 -11.94793 -11.74539 -11.59699 -11.29411 -11.01121 -10.65750 -10.59681 -10.47810 -10.09620 -9.65224 -9.28363 -9.17682 -9.15500 -9.00543 -8.32374 -8.22532 -5.97228 -3.99376 0.72146 1.16255 1.86171 2.74764 3.32387 3.39684 3.43990 3.44508 3.94509 4.48178 4.52504 4.55369 4.75957 4.99333 5.15624 5.20809 5.21827 5.28937 5.38461 5.41787 5.42832 5.70290 5.79325 5.83074 6.02098 6.03677 6.11848 6.24741 6.27562 6.44774 6.72208 6.76057 6.91930 7.16320 7.71523 7.86745 8.03592 8.46525 9.08159 9.64489 11.14169 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036710 B = 0.003031 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.560094 B = 9235.014579 C = 9617.736403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.058 4.058 3 C -0.140 4.140 4 C -0.041 4.041 5 C -0.462 4.462 6 S 1.317 4.683 7 O -0.855 6.855 8 C -0.443 4.443 9 C -0.101 4.101 10 C -0.104 4.104 11 C 0.018 3.982 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.050 4.050 21 C -0.139 4.139 22 H 0.073 0.927 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.045 0.955 33 H 0.015 0.985 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.126 0.874 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.291 5.281 -11.836 25.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.058 4.058 3 C -0.159 4.159 4 C -0.060 4.060 5 C -0.558 4.558 6 S 1.517 4.483 7 O -0.851 6.851 8 C -0.581 4.581 9 C -0.140 4.140 10 C -0.143 4.143 11 C -0.020 4.020 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.146 4.146 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.069 4.069 21 C -0.158 4.158 22 H 0.092 0.908 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.155 0.845 27 H 0.131 0.869 28 H 0.102 0.898 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.034 0.966 34 H 0.036 0.964 35 H 0.069 0.931 36 H 0.144 0.856 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.515 5.252 -12.650 25.505 hybrid contribution -0.744 -1.877 2.194 2.982 sum -22.259 3.375 -10.456 24.823 Atomic orbital electron populations 1.20869 0.91072 1.03057 1.02562 1.20113 0.96150 0.93408 0.96118 1.21154 0.94539 0.97555 1.02686 1.20879 0.94025 0.96732 0.94395 1.27909 1.19948 0.97003 1.10896 1.69472 0.81097 1.09501 0.88273 1.93092 1.77953 1.44827 1.69213 1.27783 1.04163 1.07381 1.18745 1.21311 0.90007 1.02188 1.00475 1.21617 1.00393 1.00314 0.91979 1.19142 0.88818 0.97298 0.96692 1.21312 0.91779 1.50250 0.92432 0.92736 1.25037 0.96599 0.95430 0.97507 1.69978 0.99420 1.51073 1.33047 0.86551 0.78361 0.77568 0.85612 1.19795 1.21054 1.20981 1.21162 0.94360 0.97847 0.93565 1.21136 0.94337 0.97709 1.02588 0.90826 0.91386 0.91206 0.85537 0.84482 0.86904 0.89846 0.92083 0.91177 0.93150 0.93664 0.96646 0.96396 0.93079 0.85567 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.01 36.00 0.36 -0.39 16 2 C -0.06 -0.53 5.88 -104.63 -0.62 -1.15 16 3 C -0.14 -1.20 9.70 -39.58 -0.38 -1.58 16 4 C -0.04 -0.36 9.75 -39.58 -0.39 -0.75 16 5 C -0.46 -5.24 5.61 -39.58 -0.22 -5.46 16 6 S 1.32 15.23 13.55 -107.50 -1.46 13.77 16 7 O -0.86 -15.22 16.90 -35.23 -0.60 -15.81 16 8 C -0.44 -5.94 5.88 37.16 0.22 -5.72 16 9 C -0.10 -1.70 5.22 -26.73 -0.14 -1.84 16 10 C -0.10 -2.17 5.15 -26.73 -0.14 -2.31 16 11 C 0.02 0.46 4.97 -27.88 -0.14 0.33 16 12 C -0.52 -15.02 9.11 -34.44 -0.31 -15.34 16 13 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 17 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.05 -0.64 9.44 -39.58 -0.37 -1.02 16 21 C -0.14 -1.49 9.70 -39.58 -0.38 -1.87 16 22 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 24 H 0.07 0.36 8.09 -51.93 -0.42 -0.06 16 25 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 26 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 27 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.13 1.78 7.45 -52.49 -0.39 1.38 16 37 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 LS Contribution 327.62 15.07 4.94 4.94 Total: -1.00 -36.82 327.62 -9.86 -46.68 By element: Atomic # 1 Polarization: 1.52 SS G_CDS: -5.85 Total: -4.33 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: -2.61 Total: -35.58 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.74 Total: -26.60 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.60 Total: -15.81 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 16 Polarization: 15.23 SS G_CDS: -1.46 Total: 13.77 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.82 -9.86 -46.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395394048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.633 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds