Wall clock time and date at job start Mon Mar 30 2020 06:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 S 1.76202 * 120.00249 * 179.97438 * 5 4 3 7 7 O 1.42101 * 103.00004 * 203.84780 * 6 5 4 8 8 C 1.81393 * 103.00197 * 89.99703 * 6 5 4 9 9 C 1.53003 * 109.47449 * 180.02562 * 8 6 5 10 10 C 1.52993 * 109.47270 * 180.02562 * 9 8 6 11 11 C 1.53002 * 109.46898 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47279 * 179.97438 * 11 10 9 13 13 H 1.08005 * 119.99996 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00621 * 179.97438 * 12 11 10 15 15 N 1.31512 * 119.99328 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00467 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.47066 * 120.00003 * 16 14 12 19 19 H 1.48497 * 109.47051 * 240.00065 * 16 14 12 20 20 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 21 21 C 1.38233 * 120.00012 * 359.96176 * 20 5 4 22 22 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 23 23 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 24 24 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.09008 * 109.47248 * 300.00312 * 8 6 5 28 28 H 1.08997 * 109.47616 * 59.99698 * 8 6 5 29 29 H 1.09000 * 109.46460 * 300.00342 * 9 8 6 30 30 H 1.09002 * 109.46661 * 59.99510 * 9 8 6 31 31 H 1.09004 * 109.46896 * 299.99464 * 10 9 8 32 32 H 1.08993 * 109.47307 * 59.99721 * 10 9 8 33 33 H 1.08995 * 109.47286 * 299.99866 * 11 10 9 34 34 H 1.09005 * 109.47324 * 60.00118 * 11 10 9 35 35 H 0.97007 * 120.00049 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.99672 * 179.97438 * 20 5 4 37 37 H 1.08004 * 119.99493 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 16 6.0337 -0.0001 0.0122 7 8 6.3554 -1.2652 -0.5494 8 6 6.4351 -0.0042 1.7812 9 6 7.9547 -0.0040 1.9594 10 6 8.2932 -0.0082 3.4514 11 6 9.8128 -0.0086 3.6295 12 6 10.1464 -0.0120 5.0991 13 1 9.3538 -0.0142 5.8328 14 6 11.4634 -0.0136 5.5073 15 7 12.4285 -0.0115 4.6139 16 14 11.8767 -0.0185 7.3289 17 1 10.6209 -0.0209 8.1214 18 1 12.6686 -1.2322 7.6535 19 1 12.6693 1.1928 7.6599 20 6 3.5805 -1.1972 0.0001 21 6 2.1981 -1.1972 -0.0042 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.1205 2.1324 0.0100 27 1 6.0144 0.8847 2.2513 28 1 6.0144 -0.8952 2.2472 29 1 8.3757 -0.8927 1.4891 30 1 8.3750 0.8872 1.4934 31 1 7.8722 0.8804 3.9219 32 1 7.8729 -0.8996 3.9169 33 1 10.2336 -0.8972 3.1591 34 1 10.2336 0.8827 3.1639 35 1 13.3551 -0.0129 4.9010 36 1 4.1205 -2.1325 -0.0005 37 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395394048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:16 Heat of formation + Delta-G solvation = -67.401736 kcal Electronic energy + Delta-G solvation = -16769.260079 eV Core-core repulsion = 14021.979328 eV Total energy + Delta-G solvation = -2747.280751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13774 -36.92610 -36.79312 -34.64112 -33.79618 -31.91786 -31.25917 -28.03054 -27.09075 -23.80382 -23.72289 -22.53076 -21.77128 -19.03453 -18.42442 -17.60179 -16.64886 -16.56646 -16.25961 -16.14236 -15.82870 -14.98434 -14.65720 -14.59191 -14.53316 -14.34520 -13.81441 -13.44093 -13.40020 -13.07159 -13.00399 -12.87397 -12.63411 -12.38061 -12.29644 -12.12254 -11.99131 -11.52812 -11.41718 -11.28108 -10.82208 -10.56169 -9.95665 -9.93239 -9.29735 -8.20327 -6.31761 -0.09114 0.40624 0.93171 1.38949 1.39700 1.52993 1.81447 2.40558 2.65251 2.95711 3.12307 3.82710 3.94827 3.97118 4.04977 4.07055 4.39640 4.41729 4.47833 4.57974 4.75587 4.77283 4.83071 4.87990 4.95980 5.06501 5.12856 5.17006 5.25702 5.31707 5.32800 5.33789 5.53446 5.58118 5.76852 5.86595 6.01714 6.25561 6.85765 7.37456 8.91689 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.036710 B = 0.003031 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.560094 B = 9235.014579 C = 9617.736403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.059 4.059 3 C -0.142 4.142 4 C -0.034 4.034 5 C -0.479 4.479 6 S 1.388 4.612 7 O -0.923 6.923 8 C -0.444 4.444 9 C -0.100 4.100 10 C -0.095 4.095 11 C 0.018 3.982 12 C -0.544 4.544 13 H 0.058 0.942 14 C -0.003 4.003 15 N -0.934 5.934 16 Si 0.966 3.034 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.273 1.273 20 C -0.084 4.084 21 C -0.155 4.155 22 H 0.085 0.915 23 H 0.069 0.931 24 H 0.087 0.913 25 H 0.162 0.838 26 H 0.182 0.818 27 H 0.148 0.852 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.033 0.967 33 H -0.018 1.018 34 H 0.004 0.996 35 H 0.264 0.736 36 H 0.096 0.904 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.509 7.858 -11.119 28.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.060 4.060 3 C -0.160 4.160 4 C -0.053 4.053 5 C -0.577 4.577 6 S 1.589 4.411 7 O -0.919 6.919 8 C -0.580 4.580 9 C -0.139 4.139 10 C -0.134 4.134 11 C -0.019 4.019 12 C -0.582 4.582 13 H 0.077 0.923 14 C -0.201 4.201 15 N -0.574 5.574 16 Si 0.791 3.209 17 H -0.187 1.187 18 H -0.206 1.206 19 H -0.199 1.199 20 C -0.103 4.103 21 C -0.174 4.174 22 H 0.103 0.897 23 H 0.088 0.912 24 H 0.106 0.894 25 H 0.180 0.820 26 H 0.200 0.800 27 H 0.166 0.834 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.115 0.885 31 H 0.086 0.914 32 H 0.052 0.948 33 H 0.000 1.000 34 H 0.022 0.978 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.724 7.822 -11.928 27.682 hybrid contribution -0.167 -2.651 1.927 3.282 sum -23.891 5.171 -10.001 26.410 Atomic orbital electron populations 1.20937 0.88894 1.04063 1.03555 1.20544 0.97853 0.93039 0.94517 1.21654 0.94656 0.98616 1.01103 1.21435 0.94615 0.97155 0.92097 1.27716 1.19060 0.97823 1.13083 1.68603 0.80708 1.06436 0.85400 1.92965 1.80270 1.47742 1.70937 1.27782 1.01439 1.08099 1.20726 1.21215 0.92772 1.02355 0.97528 1.21455 0.96326 1.00527 0.95051 1.19089 0.92537 0.94945 0.95352 1.21758 0.92341 1.50414 0.93723 0.92346 1.26018 0.96460 0.94759 1.02824 1.70108 0.99955 1.51759 1.35581 0.85381 0.78438 0.77869 0.79244 1.18655 1.20640 1.19866 1.21135 0.95554 0.97470 0.96137 1.21302 0.93639 0.99197 1.03236 0.89692 0.91204 0.89446 0.82042 0.80046 0.83373 0.91899 0.94633 0.88495 0.91406 0.94802 0.99987 0.97781 0.92731 0.88611 0.85366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 10.01 71.23 0.71 -0.41 16 2 C -0.06 -0.95 5.88 -19.87 -0.12 -1.06 16 3 C -0.14 -1.85 9.70 22.27 0.22 -1.63 16 4 C -0.03 -0.47 9.75 22.27 0.22 -0.26 16 5 C -0.48 -10.35 5.61 22.27 0.12 -10.23 16 6 S 1.39 31.43 13.55 -56.49 -0.77 30.67 16 7 O -0.92 -34.41 16.90 -148.98 -2.52 -36.92 16 8 C -0.44 -11.51 5.88 71.98 0.42 -11.09 16 9 C -0.10 -3.38 5.22 30.59 0.16 -3.22 16 10 C -0.09 -3.99 5.15 30.59 0.16 -3.83 16 11 C 0.02 0.98 4.97 29.85 0.15 1.12 16 12 C -0.54 -31.88 9.11 25.60 0.23 -31.64 16 13 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 14 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 15 N -0.93 -57.96 13.29 21.45 0.28 -57.68 16 16 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 C -0.08 -2.21 9.44 22.27 0.21 -2.00 16 21 C -0.15 -3.28 9.70 22.27 0.22 -3.07 16 22 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.07 0.65 8.09 -2.39 -0.02 0.63 16 24 H 0.09 0.55 8.09 -2.39 -0.02 0.53 16 25 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 26 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 27 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 33 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 34 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 35 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 36 H 0.10 3.00 7.45 -2.91 -0.02 2.98 16 37 H 0.13 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -83.31 327.62 3.22 -80.09 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: 1.02 Total: 3.81 kcal Atomic # 6 Polarization: -70.19 SS G_CDS: 3.17 Total: -67.03 kcal Atomic # 7 Polarization: -57.96 SS G_CDS: 0.28 Total: -57.68 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -2.52 Total: -36.92 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 16 Polarization: 31.43 SS G_CDS: -0.77 Total: 30.67 kcal Total: -83.31 3.22 -80.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395394048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.693 kcal (2) G-P(sol) polarization free energy of solvation -83.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds