Wall clock time and date at job start Mon Mar 30 2020 07:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35997 * 117.00391 * 2 1 4 4 C 1.38711 * 119.97641 * 179.97438 * 3 2 1 5 5 C 1.38089 * 120.02701 * 180.02562 * 4 3 2 6 6 C 1.38929 * 119.97312 * 359.97438 * 5 4 3 7 7 S 1.76197 * 120.02554 * 180.02562 * 6 5 4 8 8 C 1.81399 * 103.00045 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.46810 * 179.97438 * 8 7 6 10 10 C 1.53006 * 109.46997 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47481 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47432 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99822 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00335 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00347 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99775 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47644 * 89.99467 * 16 14 12 18 18 H 1.48498 * 109.46978 * 209.99664 * 16 14 12 19 19 H 1.48505 * 109.47148 * 329.99278 * 16 14 12 20 20 C 1.38923 * 119.94875 * 0.27922 * 6 5 4 21 21 C 1.38083 * 119.97424 * 359.48542 * 20 6 5 22 22 H 1.09004 * 109.47417 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46945 * 299.99777 * 1 2 3 24 24 H 1.09007 * 109.47098 * 59.99551 * 1 2 3 25 25 H 1.07997 * 119.99202 * 0.02562 * 4 3 2 26 26 H 1.08001 * 120.01759 * 179.97438 * 5 4 3 27 27 H 1.09000 * 109.47070 * 300.00113 * 8 7 6 28 28 H 1.09001 * 109.46593 * 60.00110 * 8 7 6 29 29 H 1.09000 * 109.47486 * 299.99969 * 9 8 7 30 30 H 1.09001 * 109.47362 * 60.00691 * 9 8 7 31 31 H 1.09000 * 109.46866 * 300.00212 * 10 9 8 32 32 H 1.08996 * 109.47261 * 59.99820 * 10 9 8 33 33 H 1.09004 * 109.46672 * 300.00239 * 11 10 9 34 34 H 1.08996 * 109.47340 * 59.99477 * 11 10 9 35 35 H 0.97005 * 120.00087 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.01129 * 179.70422 * 20 6 5 37 37 H 1.07996 * 119.98976 * 180.20560 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 3.4317 1.2836 0.0005 5 6 4.0598 2.5134 0.0011 6 6 3.3037 3.6789 0.0005 7 16 4.1037 5.2488 0.0005 8 6 2.7141 6.4149 0.0005 9 6 3.2508 7.8477 0.0012 10 6 2.0788 8.8313 0.0018 11 6 2.6153 10.2641 0.0018 12 6 1.4610 11.2328 0.0018 13 1 0.4461 10.8634 0.0014 14 6 1.7004 12.5906 0.0024 15 7 0.6930 13.4360 0.0018 16 14 3.4558 13.2294 0.0024 17 1 3.9209 13.3992 -1.3976 18 1 3.5064 14.5378 0.7029 19 1 4.3357 12.2591 0.7020 20 6 1.9164 3.6057 0.0053 21 6 1.2906 2.3748 -0.0001 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 4.0194 0.3775 0.0005 26 1 5.1384 2.5693 0.0019 27 1 2.1055 6.2549 -0.8894 28 1 2.1056 6.2548 0.8906 29 1 3.8592 8.0075 0.8914 30 1 3.8596 8.0081 -0.8886 31 1 1.4700 8.6716 -0.8882 32 1 1.4703 8.6708 0.8918 33 1 3.2243 10.4239 0.8916 34 1 3.2236 10.4243 -0.8883 35 1 0.8615 14.3913 0.0018 36 1 1.3277 4.5111 0.0097 37 1 0.2121 2.3176 0.0002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395403069.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:53 Heat of formation + Delta-G solvation = -35.817788 kcal Electronic energy + Delta-G solvation = -16553.548585 eV Core-core repulsion = 13807.637417 eV Total energy + Delta-G solvation = -2745.911168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.29488 -37.60306 -35.43565 -32.67380 -31.52829 -30.44474 -29.95607 -27.67400 -25.56947 -23.02307 -22.66052 -21.55638 -20.16906 -18.53520 -17.39371 -16.67836 -16.40637 -16.04872 -15.35154 -15.05225 -14.88556 -14.25317 -14.01404 -13.76742 -13.40695 -12.94730 -12.92245 -12.65476 -12.30837 -12.20659 -11.68635 -11.62167 -11.29143 -11.18218 -10.92739 -10.69263 -10.20646 -9.94694 -9.74961 -9.54615 -9.37221 -9.23353 -9.18960 -8.54449 -7.30287 -6.05115 -4.03314 1.03478 1.04438 1.50741 2.43612 2.96822 3.30916 3.38368 3.41806 3.42331 4.45002 4.46856 4.56600 4.75153 4.80030 4.98691 4.99344 5.01075 5.09357 5.14593 5.29195 5.31347 5.55503 5.67852 5.77167 5.81617 5.90654 6.02414 6.06383 6.21756 6.37001 6.51404 6.62507 6.86779 7.05918 7.28057 7.41248 7.78606 8.52754 8.99459 9.57526 11.08344 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.040414 B = 0.002862 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.667626 B = 9781.314743 C =10437.629038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.116 3.884 4 C -0.134 4.134 5 C -0.064 4.064 6 C -0.113 4.113 7 S -0.128 6.128 8 C -0.099 4.099 9 C -0.107 4.107 10 C -0.096 4.096 11 C -0.014 4.014 12 C -0.521 4.521 13 H 0.071 0.929 14 C 0.065 3.935 15 N -0.905 5.905 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.265 1.265 20 C -0.093 4.093 21 C -0.187 4.187 22 H 0.099 0.901 23 H 0.056 0.944 24 H 0.056 0.944 25 H 0.134 0.866 26 H 0.135 0.865 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.016 0.984 34 H 0.012 0.988 35 H 0.263 0.737 36 H 0.130 0.870 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.173 -26.363 0.026 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.232 6.232 3 C 0.068 3.932 4 C -0.154 4.154 5 C -0.088 4.088 6 C -0.226 4.226 7 S 0.117 5.883 8 C -0.247 4.247 9 C -0.146 4.146 10 C -0.136 4.136 11 C -0.052 4.052 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.136 4.136 15 N -0.544 5.544 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.190 1.190 20 C -0.117 4.117 21 C -0.207 4.207 22 H 0.118 0.882 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.035 0.965 34 H 0.030 0.970 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.404 -25.996 0.029 26.367 hybrid contribution -0.876 0.299 -0.022 0.926 sum 3.528 -25.697 0.007 25.938 Atomic orbital electron populations 1.23065 0.78353 1.03947 1.01495 1.86078 1.21414 1.26853 1.88896 1.19005 0.92364 0.84124 0.97660 1.20333 0.91349 0.98209 1.05499 1.20599 0.99713 0.89811 0.98630 1.21716 0.96116 0.97638 1.07157 1.85535 1.15138 0.95275 1.92357 1.23833 0.98093 0.97398 1.05378 1.21504 0.99983 0.90141 1.02941 1.21461 0.95580 0.95213 1.01316 1.19576 0.97167 0.92076 0.96359 1.21148 0.93645 0.90342 1.50793 0.91094 1.25046 0.96989 0.96999 0.94553 1.69918 1.30784 1.02438 1.51216 0.86764 0.85650 0.78273 0.78531 1.20283 1.21397 1.18951 1.21069 0.93047 0.98005 0.99592 1.21149 1.00071 0.91932 1.07586 0.88218 0.92576 0.92581 0.84772 0.84765 0.89517 0.89524 0.91305 0.91308 0.92598 0.92569 0.96542 0.96977 0.92742 0.85236 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.08 10.50 -19.73 -0.21 -3.29 16 3 C 0.12 1.22 6.69 -39.23 -0.26 0.96 16 4 C -0.13 -1.36 9.98 -39.46 -0.39 -1.75 16 5 C -0.06 -0.69 9.79 -39.38 -0.39 -1.07 16 6 C -0.11 -1.37 6.11 -39.07 -0.24 -1.61 16 7 S -0.13 -1.65 21.92 -107.50 -2.36 -4.01 16 8 C -0.10 -1.29 4.33 37.16 0.16 -1.13 16 9 C -0.11 -1.65 5.22 -26.73 -0.14 -1.79 16 10 C -0.10 -1.82 5.15 -26.73 -0.14 -1.96 16 11 C -0.01 -0.34 4.04 -27.89 -0.11 -0.45 16 12 C -0.52 -14.88 9.66 -34.44 -0.33 -15.21 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -28.03 13.96 55.43 0.77 -27.25 16 16 Si 0.88 21.82 27.47 -169.99 -4.67 17.16 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 20 C -0.09 -1.06 9.36 -39.38 -0.37 -1.43 16 21 C -0.19 -1.91 9.03 -39.46 -0.36 -2.27 16 22 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 24 H 0.06 0.30 7.66 -51.92 -0.40 -0.10 16 25 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.09 1.07 7.76 -51.92 -0.40 0.67 16 28 H 0.09 1.07 7.73 -51.92 -0.40 0.67 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 34 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 35 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 36 H 0.13 1.37 5.87 -52.49 -0.31 1.06 16 37 H 0.13 1.04 6.29 -52.49 -0.33 0.71 16 LS Contribution 320.09 15.07 4.82 4.82 Total: -1.00 -31.57 320.09 -8.86 -40.43 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -5.55 Total: -3.13 kcal Atomic # 6 Polarization: -23.06 SS G_CDS: -1.67 Total: -24.73 kcal Atomic # 7 Polarization: -28.03 SS G_CDS: 0.77 Total: -27.25 kcal Atomic # 8 Polarization: -3.08 SS G_CDS: -0.21 Total: -3.29 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.67 Total: 17.16 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.36 Total: -4.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.57 -8.86 -40.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395403069.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.610 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds