Wall clock time and date at job start Mon Mar 30 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.09000 * 109.46859 * 54.99989 * 3 2 1 5 5 C 1.52995 * 109.47203 * 175.00069 * 3 2 1 6 6 S 1.81401 * 109.47025 * 295.00588 * 3 2 1 7 7 O 1.42100 * 109.47117 * 301.38500 * 6 3 2 8 8 C 1.81402 * 102.99682 * 184.99826 * 6 3 2 9 9 C 1.50704 * 109.47045 * 179.97438 * 8 6 3 10 10 C 1.38634 * 119.74712 * 269.73180 * 9 8 6 11 11 C 1.37624 * 120.24694 * 179.72370 * 10 9 8 12 12 C 1.40712 * 119.74462 * 0.56326 * 11 10 9 13 13 C 1.41391 * 120.24904 * 179.68531 * 12 11 10 14 14 H 1.07998 * 120.00426 * 155.31190 * 13 12 11 15 15 C 1.39953 * 119.99598 * 335.31256 * 13 12 11 16 16 N 1.30819 * 120.00091 * 342.23339 * 15 13 12 17 17 Si 1.86805 * 119.99707 * 162.23115 * 15 13 12 18 18 H 1.48492 * 109.47103 * 94.66619 * 17 15 13 19 19 H 1.48498 * 109.46627 * 214.66400 * 17 15 13 20 20 H 1.48499 * 109.47129 * 334.66299 * 17 15 13 21 21 C 1.40718 * 119.50999 * 359.70568 * 12 11 10 22 22 C 1.37619 * 119.74735 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.46862 * 299.99431 * 1 2 3 24 24 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47488 * 59.99772 * 1 2 3 26 26 H 1.08993 * 109.47124 * 119.99876 * 2 1 3 27 27 H 1.08996 * 109.46742 * 240.00473 * 2 1 3 28 28 H 1.09001 * 109.46811 * 60.00431 * 5 3 2 29 29 H 1.08998 * 109.46977 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47310 * 300.00371 * 5 3 2 31 31 H 1.08993 * 109.47491 * 299.99803 * 8 6 3 32 32 H 1.08994 * 109.47030 * 60.00169 * 8 6 3 33 33 H 1.07996 * 119.88099 * 359.97314 * 10 9 8 34 34 H 1.07999 * 120.13066 * 180.27750 * 11 10 9 35 35 H 0.96996 * 120.00005 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.12784 * 179.97438 * 21 12 11 37 37 H 1.07996 * 119.88000 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 16 1.5600 2.2536 -1.5500 7 8 2.0999 1.5324 -2.6489 8 6 2.3709 3.8719 -1.4317 9 6 2.0634 4.6792 -2.6666 10 6 2.9040 4.6013 -3.7663 11 6 2.6300 5.3297 -4.9013 12 6 1.4981 6.1649 -4.9386 13 6 1.2101 6.9230 -6.0968 14 1 0.1963 7.2352 -6.2997 15 6 2.2388 7.2689 -6.9804 16 7 3.4855 7.2082 -6.5886 17 14 1.8317 7.8171 -8.7191 18 1 1.7627 9.2997 -8.7673 19 1 2.8873 7.3403 -9.6483 20 1 0.5215 7.2472 -9.1238 21 6 0.6550 6.2403 -3.8144 22 6 0.9455 5.4987 -2.6921 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.9994 0.9054 -0.7162 29 1 3.9281 2.4720 0.1252 30 1 3.8532 0.9570 1.0570 31 1 2.0030 4.3993 -0.5516 32 1 3.4487 3.7330 -1.3480 33 1 3.7750 3.9636 -3.7336 34 1 3.2836 5.2642 -5.7586 35 1 4.1985 7.4482 -7.2009 36 1 -0.2162 6.8784 -3.8320 37 1 0.3002 5.5553 -1.8280 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399046941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:27 Heat of formation + Delta-G solvation = -44.031320 kcal Electronic energy + Delta-G solvation = -17623.778670 eV Core-core repulsion = 14877.511336 eV Total energy + Delta-G solvation = -2746.267334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -37.62178 -35.75380 -35.08616 -33.99500 -31.37935 -30.26924 -29.30888 -27.47294 -24.02716 -23.84567 -21.42895 -21.00470 -20.00978 -17.33072 -17.21286 -15.94318 -15.38295 -15.01902 -14.30266 -14.02076 -13.97931 -13.68136 -13.59594 -13.47940 -12.67199 -12.54781 -12.36334 -11.98029 -11.90691 -11.65138 -11.48496 -11.34844 -11.13971 -11.05634 -10.91659 -10.79816 -10.62851 -10.53843 -9.77433 -9.52899 -9.40760 -9.09578 -7.89640 -7.46874 -7.19670 -6.78788 -4.36392 1.81684 2.77582 3.02480 3.05563 3.07535 3.12104 3.28691 3.91370 4.21060 4.60791 4.73609 4.83559 5.05364 5.33947 5.42060 5.48012 5.58909 5.64865 5.73170 5.75305 5.82907 5.87818 6.01099 6.08286 6.19907 6.26351 6.35810 6.40958 6.94039 7.04055 7.24200 7.32238 7.58446 7.80723 8.02861 8.06832 8.25882 8.61271 8.85994 8.94253 10.15032 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041734 B = 0.004091 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.760527 B = 6842.402577 C = 6929.788015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.099 4.099 3 C -0.429 4.429 4 H 0.116 0.884 5 C -0.146 4.146 6 S 1.225 4.775 7 O -0.840 6.840 8 C -0.359 4.359 9 C -0.206 4.206 10 C -0.085 4.085 11 C -0.163 4.163 12 C 0.113 3.887 13 C -0.459 4.459 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.790 5.790 17 Si 0.908 3.092 18 H -0.270 1.270 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.226 4.226 22 C -0.082 4.082 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.095 0.905 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.701 -7.448 11.420 14.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.137 4.137 3 C -0.544 4.544 4 H 0.134 0.866 5 C -0.204 4.204 6 S 1.426 4.574 7 O -0.835 6.835 8 C -0.496 4.496 9 C -0.210 4.210 10 C -0.105 4.105 11 C -0.183 4.183 12 C 0.110 3.890 13 C -0.489 4.489 14 H 0.098 0.902 15 C -0.143 4.143 16 N -0.415 5.415 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.246 4.246 22 C -0.102 4.102 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.995 -7.843 10.663 14.149 hybrid contribution 2.372 0.185 -0.477 2.426 sum -2.624 -7.658 10.186 13.011 Atomic orbital electron populations 1.21900 0.95255 1.02208 1.02407 1.21189 0.96114 0.93932 1.02463 1.27722 1.01399 1.05550 1.19681 0.86587 1.21813 0.93925 1.02255 1.02416 1.70531 1.17078 0.86714 0.83116 1.93101 1.79679 1.68168 1.42580 1.26192 1.07845 1.13264 1.02340 1.18280 1.01028 1.07000 0.94646 1.20549 0.97439 0.98481 0.94030 1.21295 1.00780 0.98578 0.97636 1.17659 0.90650 0.89253 0.91452 1.19639 0.95312 1.29336 1.04563 0.90208 1.25952 0.94438 0.93543 1.00381 1.69827 1.00441 1.34962 1.36273 0.86303 0.79713 0.79294 0.81472 1.19533 1.20022 1.18301 1.20963 1.03517 1.05784 0.94303 1.20386 0.95891 0.96785 0.97131 0.91876 0.92315 0.92129 0.91844 0.91717 0.92478 0.92156 0.92551 0.87598 0.90469 0.89818 0.86460 0.90792 0.88633 0.88711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.74 37.16 0.36 -1.05 16 2 C -0.10 -1.08 5.39 -26.73 -0.14 -1.22 16 3 C -0.43 -4.94 2.88 -26.73 -0.08 -5.02 16 4 H 0.12 1.01 8.14 -51.92 -0.42 0.59 16 5 C -0.15 -1.84 8.94 37.16 0.33 -1.50 16 6 S 1.23 18.28 11.46 -107.50 -1.23 17.05 16 7 O -0.84 -17.94 18.07 -35.23 -0.64 -18.57 16 8 C -0.36 -6.00 5.44 36.01 0.20 -5.80 16 9 C -0.21 -4.48 5.16 -104.33 -0.54 -5.02 16 10 C -0.09 -2.13 9.67 -39.66 -0.38 -2.51 16 11 C -0.16 -4.41 8.70 -38.87 -0.34 -4.75 16 12 C 0.11 3.02 5.57 -106.83 -0.60 2.43 16 13 C -0.46 -12.17 9.05 -37.74 -0.34 -12.51 16 14 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 15 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 16 N -0.79 -20.67 10.97 55.55 0.61 -20.07 16 17 Si 0.91 18.67 29.60 -169.99 -5.03 13.64 16 18 H -0.27 -5.44 7.11 56.52 0.40 -5.03 16 19 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 20 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 21 C -0.23 -5.40 9.80 -38.87 -0.38 -5.78 16 22 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.54 7.13 -51.94 -0.37 0.17 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.84 8.08 -51.93 -0.42 0.42 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.74 6.51 -51.93 -0.34 0.40 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.11 1.40 8.08 -51.93 -0.42 0.98 16 32 H 0.08 1.33 6.83 -51.93 -0.35 0.98 16 33 H 0.08 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.12 3.29 6.18 -52.49 -0.32 2.96 16 35 H 0.28 6.68 8.30 -40.82 -0.34 6.34 16 36 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 37 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 318.61 15.07 4.80 4.80 Total: -1.00 -32.08 318.61 -9.45 -41.53 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -5.58 Total: 4.66 kcal Atomic # 6 Polarization: -40.66 SS G_CDS: -2.38 Total: -43.05 kcal Atomic # 7 Polarization: -20.67 SS G_CDS: 0.61 Total: -20.07 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.64 Total: -18.57 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.03 Total: 13.64 kcal Atomic # 16 Polarization: 18.28 SS G_CDS: -1.23 Total: 17.05 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.08 -9.45 -41.53 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399046941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.498 kcal (2) G-P(sol) polarization free energy of solvation -32.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds