Wall clock time and date at job start Mon Mar 30 2020 07:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47080 * 2 1 4 4 H 1.09000 * 109.46859 * 54.99989 * 3 2 1 5 5 C 1.52995 * 109.47203 * 175.00069 * 3 2 1 6 6 S 1.81401 * 109.47025 * 295.00588 * 3 2 1 7 7 O 1.42100 * 109.47117 * 301.38500 * 6 3 2 8 8 C 1.81402 * 102.99682 * 184.99826 * 6 3 2 9 9 C 1.50704 * 109.47045 * 179.97438 * 8 6 3 10 10 C 1.38634 * 119.74712 * 269.73180 * 9 8 6 11 11 C 1.37624 * 120.24694 * 179.72370 * 10 9 8 12 12 C 1.40712 * 119.74462 * 0.56326 * 11 10 9 13 13 C 1.41391 * 120.24904 * 179.68531 * 12 11 10 14 14 H 1.07998 * 120.00426 * 155.31190 * 13 12 11 15 15 C 1.39953 * 119.99598 * 335.31256 * 13 12 11 16 16 N 1.30819 * 120.00091 * 342.23339 * 15 13 12 17 17 Si 1.86805 * 119.99707 * 162.23115 * 15 13 12 18 18 H 1.48492 * 109.47103 * 94.66619 * 17 15 13 19 19 H 1.48498 * 109.46627 * 214.66400 * 17 15 13 20 20 H 1.48499 * 109.47129 * 334.66299 * 17 15 13 21 21 C 1.40718 * 119.50999 * 359.70568 * 12 11 10 22 22 C 1.37619 * 119.74735 * 0.02562 * 21 12 11 23 23 H 1.09006 * 109.46862 * 299.99431 * 1 2 3 24 24 H 1.08998 * 109.46894 * 180.02562 * 1 2 3 25 25 H 1.08989 * 109.47488 * 59.99772 * 1 2 3 26 26 H 1.08993 * 109.47124 * 119.99876 * 2 1 3 27 27 H 1.08996 * 109.46742 * 240.00473 * 2 1 3 28 28 H 1.09001 * 109.46811 * 60.00431 * 5 3 2 29 29 H 1.08998 * 109.46977 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47310 * 300.00371 * 5 3 2 31 31 H 1.08993 * 109.47491 * 299.99803 * 8 6 3 32 32 H 1.08994 * 109.47030 * 60.00169 * 8 6 3 33 33 H 1.07996 * 119.88099 * 359.97314 * 10 9 8 34 34 H 1.07999 * 120.13066 * 180.27750 * 11 10 9 35 35 H 0.96996 * 120.00005 * 180.02562 * 16 15 13 36 36 H 1.08002 * 120.12784 * 179.97438 * 21 12 11 37 37 H 1.07996 * 119.88000 * 179.97438 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5648 1.4444 0.1257 6 16 1.5600 2.2536 -1.5500 7 8 2.0999 1.5324 -2.6489 8 6 2.3709 3.8719 -1.4317 9 6 2.0634 4.6792 -2.6666 10 6 2.9040 4.6013 -3.7663 11 6 2.6300 5.3297 -4.9013 12 6 1.4981 6.1649 -4.9386 13 6 1.2101 6.9230 -6.0968 14 1 0.1963 7.2352 -6.2997 15 6 2.2388 7.2689 -6.9804 16 7 3.4855 7.2082 -6.5886 17 14 1.8317 7.8171 -8.7191 18 1 1.7627 9.2997 -8.7673 19 1 2.8873 7.3403 -9.6483 20 1 0.5215 7.2472 -9.1238 21 6 0.6550 6.2403 -3.8144 22 6 0.9455 5.4987 -2.6921 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8900 28 1 3.9994 0.9054 -0.7162 29 1 3.9281 2.4720 0.1252 30 1 3.8532 0.9570 1.0570 31 1 2.0030 4.3993 -0.5516 32 1 3.4487 3.7330 -1.3480 33 1 3.7750 3.9636 -3.7336 34 1 3.2836 5.2642 -5.7586 35 1 4.1985 7.4482 -7.2009 36 1 -0.2162 6.8784 -3.8320 37 1 0.3002 5.5553 -1.8280 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399046941.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:27 Heat of formation + Delta-G solvation = -63.878170 kcal Electronic energy + Delta-G solvation = -17624.639294 eV Core-core repulsion = 14877.511336 eV Total energy + Delta-G solvation = -2747.127958 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.46584 -36.82996 -36.39999 -35.83395 -33.05861 -31.26659 -31.16987 -29.17089 -25.74241 -24.75431 -22.92043 -22.46121 -21.70832 -19.23148 -18.42535 -17.22298 -17.07090 -16.44773 -15.75657 -15.68423 -15.42843 -14.93268 -14.70593 -14.53238 -14.26697 -14.02552 -13.82682 -13.50221 -13.42899 -13.07204 -12.84948 -12.73199 -12.51733 -12.38966 -12.25002 -12.13047 -11.92925 -11.66794 -11.53131 -11.29443 -11.11844 -10.80778 -9.41912 -9.28731 -8.87756 -8.64438 -6.32985 0.49459 1.10379 1.13998 1.36443 1.49610 1.54952 1.91365 2.19106 2.73295 2.99322 3.74248 3.81278 3.89718 4.10891 4.26160 4.29146 4.44013 4.46197 4.58350 4.64594 4.70220 4.88819 4.90563 4.99874 5.06298 5.11822 5.15388 5.17175 5.29769 5.34938 5.43030 5.48063 5.68799 5.94439 6.09802 6.18486 6.36530 6.69123 6.92118 7.02949 8.31340 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041734 B = 0.004091 C = 0.004040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.760527 B = 6842.402577 C = 6929.788015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.103 4.103 3 C -0.411 4.411 4 H 0.166 0.834 5 C -0.153 4.153 6 S 1.264 4.736 7 O -0.915 6.915 8 C -0.367 4.367 9 C -0.195 4.195 10 C -0.109 4.109 11 C -0.195 4.195 12 C 0.077 3.923 13 C -0.499 4.499 14 H 0.083 0.917 15 C 0.031 3.969 16 N -0.830 5.830 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.271 1.271 20 H -0.255 1.255 21 C -0.236 4.236 22 C -0.076 4.076 23 H 0.092 0.908 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.084 0.916 27 H 0.032 0.968 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.081 0.919 31 H 0.156 0.844 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.286 0.714 36 H 0.113 0.887 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.643 -7.542 14.616 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.142 4.142 3 C -0.529 4.529 4 H 0.183 0.817 5 C -0.211 4.211 6 S 1.466 4.534 7 O -0.910 6.910 8 C -0.503 4.503 9 C -0.198 4.198 10 C -0.129 4.129 11 C -0.215 4.215 12 C 0.075 3.925 13 C -0.528 4.528 14 H 0.102 0.898 15 C -0.184 4.184 16 N -0.457 5.457 17 Si 0.803 3.197 18 H -0.182 1.182 19 H -0.196 1.196 20 H -0.179 1.179 21 C -0.255 4.255 22 C -0.095 4.095 23 H 0.111 0.889 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.102 0.898 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.944 -7.905 13.830 17.378 hybrid contribution 2.999 0.023 -1.153 3.213 sum -3.945 -7.883 12.677 15.441 Atomic orbital electron populations 1.21982 0.93397 1.03276 1.03566 1.21263 0.97845 0.93099 1.01949 1.27606 1.01132 1.06229 1.17933 0.81676 1.21890 0.94467 1.02356 1.02401 1.69565 1.15476 0.85220 0.83096 1.93006 1.80829 1.70029 1.47180 1.26328 1.07986 1.14313 1.01714 1.18771 0.99741 1.06226 0.95024 1.20729 0.98341 0.98677 0.95146 1.21201 1.01684 1.00695 0.97901 1.18021 0.91470 0.89930 0.93117 1.19923 0.95917 1.30940 1.06029 0.89846 1.26860 0.93956 0.93192 1.04369 1.69907 1.01523 1.36369 1.37859 0.85182 0.79410 0.79269 0.75800 1.18239 1.19613 1.17889 1.21325 1.03491 1.06342 0.94341 1.20935 0.95864 0.94703 0.97984 0.88922 0.91573 0.92685 0.89759 0.94951 0.95658 0.91819 0.90039 0.82579 0.91271 0.90876 0.89196 0.90346 0.86919 0.82852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.74 71.98 0.70 -1.57 16 2 C -0.10 -1.93 5.39 30.60 0.16 -1.76 16 3 C -0.41 -7.81 2.88 30.59 0.09 -7.73 16 4 H 0.17 1.70 8.14 -2.39 -0.02 1.68 16 5 C -0.15 -3.43 8.94 71.98 0.64 -2.78 16 6 S 1.26 34.95 11.46 -56.49 -0.65 34.31 16 7 O -0.91 -39.81 18.07 -148.98 -2.69 -42.50 16 8 C -0.37 -11.16 5.44 71.24 0.39 -10.77 16 9 C -0.20 -8.25 5.16 -19.67 -0.10 -8.35 16 10 C -0.11 -5.69 9.67 22.22 0.21 -5.48 16 11 C -0.20 -11.22 8.70 22.73 0.20 -11.02 16 12 C 0.08 4.30 5.57 -21.29 -0.12 4.19 16 13 C -0.50 -27.55 9.05 23.46 0.21 -27.34 16 14 H 0.08 4.34 7.91 -2.91 -0.02 4.31 16 15 C 0.03 1.60 5.14 85.26 0.44 2.04 16 16 N -0.83 -45.94 10.97 21.83 0.24 -45.70 16 17 Si 0.98 39.49 29.60 68.60 2.03 41.52 16 18 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 19 H -0.27 -10.58 7.11 99.48 0.71 -9.88 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 C -0.24 -11.13 9.80 22.73 0.22 -10.91 16 22 C -0.08 -3.01 9.67 22.22 0.21 -2.80 16 23 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.82 7.13 -2.39 -0.02 0.80 16 26 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.03 0.81 8.08 -2.39 -0.02 0.79 16 28 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 1.38 6.51 -2.39 -0.02 1.36 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.16 3.18 8.08 -2.39 -0.02 3.16 16 32 H 0.07 2.26 6.83 -2.39 -0.02 2.24 16 33 H 0.07 3.81 8.06 -2.91 -0.02 3.79 16 34 H 0.09 5.51 6.18 -2.91 -0.02 5.49 16 35 H 0.29 14.36 8.30 -92.71 -0.77 13.59 16 36 H 0.11 4.82 8.06 -2.91 -0.02 4.79 16 37 H 0.15 4.26 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -76.93 318.61 3.23 -73.69 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 1.04 Total: 22.96 kcal Atomic # 6 Polarization: -87.54 SS G_CDS: 3.27 Total: -84.28 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: 0.24 Total: -45.70 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -2.69 Total: -42.50 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 2.03 Total: 41.52 kcal Atomic # 16 Polarization: 34.95 SS G_CDS: -0.65 Total: 34.31 kcal Total: -76.93 3.23 -73.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399046941.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.816 kcal (2) G-P(sol) polarization free energy of solvation -76.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds