Wall clock time and date at job start Mon Mar 30 2020 07:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47163 * 2 1 4 4 H 1.09007 * 109.46952 * 304.99319 * 3 2 1 5 5 C 1.53000 * 109.47150 * 185.00353 * 3 2 1 6 6 S 1.81397 * 109.47350 * 64.99781 * 3 2 1 7 7 O 1.42093 * 109.47044 * 58.61593 * 6 3 2 8 8 C 1.81401 * 103.00000 * 175.00140 * 6 3 2 9 9 C 1.50701 * 109.47410 * 179.97438 * 8 6 3 10 10 C 1.38632 * 119.74855 * 269.73244 * 9 8 6 11 11 C 1.37622 * 120.24185 * 179.71996 * 10 9 8 12 12 C 1.40711 * 119.74669 * 0.56508 * 11 10 9 13 13 C 1.41400 * 120.24519 * 179.68031 * 12 11 10 14 14 H 1.07993 * 120.00417 * 204.40825 * 13 12 11 15 15 C 1.39949 * 119.99722 * 24.41101 * 13 12 11 16 16 N 1.30829 * 120.00062 * 17.84366 * 15 13 12 17 17 Si 1.86798 * 120.00043 * 197.84420 * 15 13 12 18 18 H 1.48498 * 109.46821 * 90.00230 * 17 15 13 19 19 H 1.48501 * 109.47257 * 209.99803 * 17 15 13 20 20 H 1.48498 * 109.47318 * 330.00157 * 17 15 13 21 21 C 1.40712 * 119.51307 * 359.70755 * 12 11 10 22 22 C 1.37615 * 119.74605 * 359.97438 * 21 12 11 23 23 H 1.09005 * 109.47125 * 300.00524 * 1 2 3 24 24 H 1.08998 * 109.47468 * 60.00493 * 1 2 3 25 25 H 1.08998 * 109.47277 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47211 * 239.99612 * 2 1 3 27 27 H 1.09004 * 109.47077 * 119.99682 * 2 1 3 28 28 H 1.08997 * 109.47364 * 59.99111 * 5 3 2 29 29 H 1.09004 * 109.47061 * 180.02562 * 5 3 2 30 30 H 1.09001 * 109.46757 * 299.99161 * 5 3 2 31 31 H 1.09007 * 109.47035 * 59.99830 * 8 6 3 32 32 H 1.08996 * 109.47205 * 300.00205 * 8 6 3 33 33 H 1.08000 * 119.87692 * 359.96552 * 10 9 8 34 34 H 1.08002 * 120.12182 * 180.27799 * 11 10 9 35 35 H 0.96994 * 119.99970 * 179.97438 * 16 15 13 36 36 H 1.07998 * 120.12698 * 179.97438 * 21 12 11 37 37 H 1.08000 * 119.87918 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4443 -0.1258 6 16 1.5601 2.2536 1.5499 7 8 2.1000 1.5325 2.6488 8 6 2.3710 3.8719 1.4317 9 6 2.0626 4.6797 2.6660 10 6 0.9475 5.5031 2.6884 11 6 0.6532 6.2409 3.8123 12 6 1.4956 6.1662 4.9369 13 6 1.2069 6.9248 6.0947 14 1 1.9994 7.1881 6.7793 15 6 -0.1061 7.3344 6.3534 16 7 -1.1059 6.7471 5.7476 17 14 -0.4310 8.7196 7.5637 18 1 -0.4322 10.0174 6.8419 19 1 -1.7514 8.5120 8.2109 20 1 0.6321 8.7308 8.6004 21 6 2.6278 5.3314 4.9007 22 6 2.8991 4.5976 3.7686 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8531 0.9569 -1.0571 29 1 3.9281 2.4720 -0.1254 30 1 3.9994 0.9054 0.7161 31 1 2.0030 4.3992 0.5515 32 1 3.4488 3.7330 1.3478 33 1 0.3053 5.5627 1.8222 34 1 -0.2185 6.8783 3.8293 35 1 -2.0159 7.0308 5.9272 36 1 3.2813 5.2669 5.7580 37 1 3.7673 3.9559 3.7386 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399046946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:34 Heat of formation + Delta-G solvation = -63.086426 kcal Electronic energy + Delta-G solvation = -17645.304252 eV Core-core repulsion = 14898.210628 eV Total energy + Delta-G solvation = -2747.093625 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47344 -36.82695 -36.39659 -35.82912 -33.05893 -31.30420 -31.12963 -29.17335 -25.74067 -24.75345 -22.92608 -22.47064 -21.69261 -19.23732 -18.44360 -17.21588 -17.06552 -16.41604 -15.83117 -15.64331 -15.42075 -14.92971 -14.71181 -14.53711 -14.26298 -14.01906 -13.80559 -13.52179 -13.44786 -13.00911 -12.85507 -12.69610 -12.54268 -12.49235 -12.14834 -12.11603 -11.93843 -11.66952 -11.56457 -11.27714 -11.12683 -10.77439 -9.38095 -9.33113 -8.85528 -8.63367 -6.32596 0.49291 1.06968 1.16036 1.39945 1.52705 1.55725 1.92062 2.22545 2.73097 2.99284 3.73284 3.81547 3.90200 4.10245 4.26030 4.29514 4.44695 4.48309 4.57425 4.60941 4.65188 4.88981 4.90569 4.99491 5.04630 5.11304 5.15858 5.16097 5.29115 5.34458 5.44874 5.47015 5.68297 5.95500 6.08198 6.17070 6.38004 6.68473 6.93024 7.01669 8.33469 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.039414 B = 0.004232 C = 0.004045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.228832 B = 6614.038515 C = 6920.213371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.102 4.102 3 C -0.411 4.411 4 H 0.164 0.836 5 C -0.152 4.152 6 S 1.254 4.746 7 O -0.913 6.913 8 C -0.364 4.364 9 C -0.195 4.195 10 C -0.088 4.088 11 C -0.186 4.186 12 C 0.080 3.920 13 C -0.503 4.503 14 H 0.069 0.931 15 C 0.039 3.961 16 N -0.817 5.817 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.265 1.265 21 C -0.251 4.251 22 C -0.095 4.095 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.081 0.919 29 H 0.065 0.935 30 H 0.026 0.974 31 H 0.154 0.846 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.292 0.708 36 H 0.085 0.915 37 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.059 -5.755 -14.706 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.141 4.141 3 C -0.529 4.529 4 H 0.182 0.818 5 C -0.210 4.210 6 S 1.457 4.543 7 O -0.909 6.909 8 C -0.501 4.501 9 C -0.197 4.197 10 C -0.107 4.107 11 C -0.205 4.205 12 C 0.077 3.923 13 C -0.533 4.533 14 H 0.087 0.913 15 C -0.177 4.177 16 N -0.443 5.443 17 Si 0.804 3.196 18 H -0.182 1.182 19 H -0.188 1.188 20 H -0.189 1.189 21 C -0.271 4.271 22 C -0.115 4.115 23 H 0.071 0.929 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.051 0.949 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.172 0.828 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.864 -6.195 -14.000 15.574 hybrid contribution 2.568 0.157 1.033 2.772 sum -0.296 -6.037 -12.966 14.306 Atomic orbital electron populations 1.21985 0.93632 1.03238 1.03451 1.21255 0.97656 0.93181 1.01997 1.27595 1.01352 1.06135 1.17782 0.81843 1.21887 0.94204 1.02465 1.02447 1.69758 1.15705 0.85531 0.83304 1.93002 1.80812 1.70021 1.47055 1.26293 1.08211 1.13976 1.01643 1.18754 0.99716 1.06039 0.95217 1.20997 0.96005 0.95738 0.98001 1.21402 1.02087 1.03971 0.93069 1.17997 0.91110 0.89627 0.93530 1.19843 0.94818 1.31314 1.07308 0.91301 1.26710 0.94870 0.97925 0.98173 1.69841 1.00949 1.35446 1.38051 0.85192 0.78483 0.77983 0.77950 1.18241 1.18849 1.18935 1.21086 1.03079 1.04456 0.98471 1.20640 0.98410 0.98047 0.94390 0.92923 0.88988 0.91541 0.89649 0.94885 0.90052 0.91628 0.95516 0.82804 0.90600 0.83934 0.86897 0.89738 0.89719 0.89687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.51 9.74 71.98 0.70 -1.81 16 2 C -0.10 -1.98 5.39 30.59 0.16 -1.82 16 3 C -0.41 -8.01 2.88 30.59 0.09 -7.92 16 4 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 5 C -0.15 -3.33 8.94 71.98 0.64 -2.69 16 6 S 1.25 36.02 11.46 -56.49 -0.65 35.37 16 7 O -0.91 -40.18 18.07 -148.98 -2.69 -42.87 16 8 C -0.36 -11.07 5.44 71.24 0.39 -10.68 16 9 C -0.19 -8.25 5.16 -19.67 -0.10 -8.35 16 10 C -0.09 -3.77 9.67 22.22 0.21 -3.55 16 11 C -0.19 -9.54 8.70 22.73 0.20 -9.35 16 12 C 0.08 4.49 5.57 -21.29 -0.12 4.37 16 13 C -0.50 -28.09 9.05 23.46 0.21 -27.88 16 14 H 0.07 3.78 7.91 -2.91 -0.02 3.76 16 15 C 0.04 1.97 5.14 85.26 0.44 2.41 16 16 N -0.82 -42.00 10.95 21.83 0.24 -41.76 16 17 Si 0.98 38.23 29.60 68.60 2.03 40.26 16 18 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.26 -9.62 7.11 99.48 0.71 -8.91 16 20 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 21 C -0.25 -13.64 9.80 22.73 0.22 -13.42 16 22 C -0.10 -4.72 9.67 22.22 0.21 -4.51 16 23 H 0.05 0.88 7.13 -2.38 -0.02 0.86 16 24 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.03 0.85 8.09 -2.39 -0.02 0.83 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.36 6.51 -2.39 -0.02 1.34 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.15 3.22 8.08 -2.39 -0.02 3.20 16 32 H 0.08 2.36 6.84 -2.39 -0.02 2.34 16 33 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 34 H 0.11 5.89 6.16 -2.91 -0.02 5.88 16 35 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 36 H 0.08 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.08 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -73.97 318.59 3.23 -70.74 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 1.04 Total: 23.45 kcal Atomic # 6 Polarization: -88.45 SS G_CDS: 3.27 Total: -85.19 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 0.24 Total: -41.76 kcal Atomic # 8 Polarization: -40.18 SS G_CDS: -2.69 Total: -42.87 kcal Atomic # 14 Polarization: 38.23 SS G_CDS: 2.03 Total: 40.26 kcal Atomic # 16 Polarization: 36.02 SS G_CDS: -0.65 Total: 35.37 kcal Total: -73.97 3.23 -70.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399046946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.649 kcal (2) G-P(sol) polarization free energy of solvation -73.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds