Wall clock time and date at job start Mon Mar 30 2020 06:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48506 * 109.46958 * 240.00293 * 3 2 1 5 5 H 1.48491 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47060 * 120.00591 * 3 2 1 7 7 C 1.37880 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99392 * 185.97902 * 7 2 1 9 9 C 1.50697 * 120.00088 * 5.98523 * 7 2 1 10 10 C 1.52998 * 115.55050 * 279.38954 * 9 7 2 11 11 O 1.42900 * 109.46806 * 294.88036 * 10 9 7 12 12 C 1.35905 * 116.99799 * 179.97438 * 11 10 9 13 13 C 1.38773 * 120.04009 * 359.72144 * 12 11 10 14 14 C 1.38134 * 119.99104 * 179.78928 * 13 12 11 15 15 C 1.38254 * 120.07895 * 0.46994 * 14 13 12 16 16 C 1.50708 * 119.95518 * 179.76385 * 15 14 13 17 17 O 1.42898 * 109.46901 * 0.02562 * 16 15 14 18 18 C 1.38470 * 120.08832 * 359.78584 * 15 14 13 19 19 F 1.35096 * 119.99977 * 179.97438 * 18 15 14 20 20 C 1.38385 * 120.00177 * 359.97438 * 18 15 14 21 21 C 1.53002 * 117.49788 * 133.68172 * 9 7 2 22 22 C 1.53003 * 117.49834 * 65.05916 * 9 7 2 23 23 H 0.97008 * 119.99622 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47151 * 54.87687 * 10 9 7 25 25 H 1.08996 * 109.47404 * 174.88326 * 10 9 7 26 26 H 1.07998 * 120.00528 * 0.02962 * 13 12 11 27 27 H 1.07995 * 119.95785 * 180.20828 * 14 13 12 28 28 H 1.08999 * 109.46682 * 120.01861 * 16 15 14 29 29 H 1.08989 * 109.47001 * 240.02041 * 16 15 14 30 30 H 0.96701 * 113.99809 * 180.02562 * 17 16 15 31 31 H 1.08007 * 120.03998 * 180.02562 * 20 18 15 32 32 H 1.08996 * 117.50269 * 359.97438 * 21 9 7 33 33 H 1.09000 * 117.49931 * 145.02384 * 21 9 7 34 34 H 1.08998 * 117.49750 * 214.97295 * 22 9 7 35 35 H 1.08995 * 117.50297 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0801 -1.1967 0.0969 9 6 1.2570 -2.4955 -0.1372 10 6 0.6123 -3.0241 1.1457 11 8 1.6324 -3.3548 2.0901 12 6 1.2260 -3.8417 3.2921 13 6 -0.1275 -3.9924 3.5589 14 6 -0.5393 -4.4915 4.7793 15 6 0.3951 -4.8322 5.7396 16 6 -0.0575 -5.3715 7.0721 17 8 -1.4847 -5.4371 7.0994 18 6 1.7463 -4.6782 5.4788 19 9 2.6578 -5.0112 6.4187 20 6 2.1630 -4.1832 4.2556 21 6 1.8048 -3.5240 -1.1287 22 6 0.5235 -2.7539 -1.4548 23 1 -0.4850 0.8401 0.0004 24 1 -0.0387 -2.2582 1.5673 25 1 0.0260 -3.9142 0.9176 26 1 -0.8586 -3.7232 2.8110 27 1 -1.5926 -4.6117 4.9851 28 1 0.3549 -6.3697 7.2191 29 1 0.2913 -4.7134 7.8678 30 1 -1.8470 -5.7757 7.9296 31 1 3.2167 -4.0632 4.0514 32 1 2.7055 -3.2592 -1.6825 33 1 1.7060 -4.5775 -0.8671 34 1 -0.4181 -3.3009 -1.4078 35 1 0.5812 -1.9825 -2.2227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404262328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:58 Heat of formation + Delta-G solvation = -85.991717 kcal Electronic energy + Delta-G solvation = -19641.398022 eV Core-core repulsion = 16327.097973 eV Total energy + Delta-G solvation = -3314.300049 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.84312 -39.70349 -37.82060 -36.59604 -35.60848 -32.01109 -30.91613 -30.32665 -26.98023 -25.49710 -25.09860 -22.62824 -21.31063 -21.05253 -19.25876 -18.13371 -17.57107 -16.38729 -15.93854 -15.83229 -15.66170 -15.31879 -14.97874 -14.70466 -14.47523 -14.18207 -13.79702 -13.42120 -12.85486 -12.66859 -12.16509 -11.83693 -11.67756 -11.26047 -11.08317 -10.96947 -10.75671 -10.61334 -10.50718 -10.30285 -10.03977 -9.64545 -8.91557 -8.65514 -8.51295 -8.26263 -7.76856 -6.10889 -4.15053 1.34587 1.53136 3.29741 3.34040 3.37410 3.66151 3.81016 4.00667 4.37607 4.53611 4.93099 5.03309 5.17663 5.18846 5.27673 5.31964 5.36527 5.66134 5.67990 5.89346 6.13633 6.19033 6.24725 6.25460 6.43084 6.48810 6.58873 6.66105 6.69258 6.95995 6.99495 7.29847 7.36276 7.44294 7.83828 8.04463 8.35584 8.86001 9.50933 10.98904 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.004659 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.457018 B = 6008.945371 C = 6206.694063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.070 3.930 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.489 4.489 8 H 0.062 0.938 9 C 0.041 3.959 10 C 0.102 3.898 11 O -0.289 6.289 12 C 0.180 3.820 13 C -0.224 4.224 14 C -0.027 4.027 15 C -0.187 4.187 16 C 0.132 3.868 17 O -0.568 6.568 18 C 0.139 3.861 19 F -0.140 7.140 20 C -0.200 4.200 21 C -0.204 4.204 22 C -0.150 4.150 23 H 0.262 0.738 24 H 0.075 0.925 25 H 0.033 0.967 26 H 0.137 0.863 27 H 0.139 0.861 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.381 0.619 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.841 -9.838 10.847 14.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.133 4.133 3 Si 0.720 3.280 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.526 4.526 8 H 0.080 0.920 9 C 0.040 3.960 10 C 0.028 3.972 11 O -0.200 6.200 12 C 0.132 3.868 13 C -0.243 4.243 14 C -0.045 4.045 15 C -0.188 4.188 16 C 0.054 3.946 17 O -0.373 6.373 18 C 0.119 3.881 19 F -0.118 7.118 20 C -0.219 4.219 21 C -0.241 4.241 22 C -0.188 4.188 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.051 0.949 26 H 0.155 0.845 27 H 0.157 0.843 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.228 0.772 31 H 0.160 0.840 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.702 -9.429 10.174 13.975 hybrid contribution 0.288 0.691 0.684 1.014 sum -1.415 -8.738 10.857 14.008 Atomic orbital electron populations 1.69960 1.05915 1.26871 1.49360 1.24982 0.94862 0.99055 0.94388 0.86641 0.79679 0.82832 0.78822 1.20111 1.21244 1.20097 1.20357 0.93043 0.88344 1.50888 0.91956 1.18713 0.98380 0.94048 0.84826 1.22707 0.88663 0.96840 0.88978 1.86208 1.37388 1.75563 1.20879 1.18903 0.91714 0.89739 0.86474 1.21489 0.95259 1.07810 0.99760 1.20582 0.99782 0.93294 0.90859 1.19403 0.91454 1.09932 0.98057 1.20590 0.81020 0.98984 0.93980 1.86439 1.20067 1.88900 1.41908 1.16905 0.85015 0.99742 0.86388 1.91458 1.66537 1.90164 1.63672 1.20165 1.00857 1.08785 0.92132 1.22971 0.97901 0.95749 1.07488 1.22583 0.93221 1.01618 1.01376 0.92834 0.90636 0.94914 0.84535 0.84293 0.92659 0.92606 0.77185 0.83953 0.90074 0.91416 0.91624 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.40 13.11 55.43 0.73 -23.67 16 2 C 0.07 1.89 5.42 -17.82 -0.10 1.80 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.49 -13.23 8.74 -34.44 -0.30 -13.53 16 8 H 0.06 1.71 7.82 -52.49 -0.41 1.30 16 9 C 0.04 0.99 1.53 -155.66 -0.24 0.75 16 10 C 0.10 2.29 4.56 37.16 0.17 2.46 16 11 O -0.29 -6.33 10.06 -19.44 -0.20 -6.53 16 12 C 0.18 3.40 6.69 -39.23 -0.26 3.14 16 13 C -0.22 -3.83 9.04 -39.42 -0.36 -4.18 16 14 C -0.03 -0.41 9.37 -39.61 -0.37 -0.78 16 15 C -0.19 -2.72 5.89 -104.53 -0.62 -3.34 16 16 C 0.13 1.47 7.01 36.01 0.25 1.72 16 17 O -0.57 -5.85 12.13 -35.23 -0.43 -6.28 16 18 C 0.14 2.14 7.24 -39.44 -0.29 1.86 16 19 F -0.14 -2.02 16.80 2.25 0.04 -1.98 16 20 C -0.20 -3.41 9.97 -39.37 -0.39 -3.80 16 21 C -0.20 -4.37 9.96 -26.73 -0.27 -4.64 16 22 C -0.15 -3.38 9.68 -26.73 -0.26 -3.64 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.08 1.81 7.64 -51.93 -0.40 1.42 16 25 H 0.03 0.66 7.62 -51.93 -0.40 0.26 16 26 H 0.14 2.28 6.30 -52.49 -0.33 1.94 16 27 H 0.14 1.93 7.00 -52.49 -0.37 1.56 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.56 8.14 -51.94 -0.42 0.14 16 30 H 0.38 1.92 9.12 45.56 0.42 2.34 16 31 H 0.14 2.29 8.06 -52.48 -0.42 1.87 16 32 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.09 2.04 8.14 -51.93 -0.42 1.62 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -29.26 308.77 -6.83 -36.09 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.58 Total: 3.90 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.02 Total: -22.19 kcal Atomic # 7 Polarization: -24.40 SS G_CDS: 0.73 Total: -23.67 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.62 Total: -12.80 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.26 -6.83 -36.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404262328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.901 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds