Wall clock time and date at job start Mon Mar 30 2020 06:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00145 * 2 1 4 4 H 1.48506 * 109.46958 * 240.00293 * 3 2 1 5 5 H 1.48491 * 109.47147 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47060 * 120.00591 * 3 2 1 7 7 C 1.37880 * 119.99546 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99392 * 185.97902 * 7 2 1 9 9 C 1.50697 * 120.00088 * 5.98523 * 7 2 1 10 10 C 1.52998 * 115.55050 * 279.38954 * 9 7 2 11 11 O 1.42900 * 109.46806 * 294.88036 * 10 9 7 12 12 C 1.35905 * 116.99799 * 179.97438 * 11 10 9 13 13 C 1.38773 * 120.04009 * 359.72144 * 12 11 10 14 14 C 1.38134 * 119.99104 * 179.78928 * 13 12 11 15 15 C 1.38254 * 120.07895 * 0.46994 * 14 13 12 16 16 C 1.50708 * 119.95518 * 179.76385 * 15 14 13 17 17 O 1.42898 * 109.46901 * 0.02562 * 16 15 14 18 18 C 1.38470 * 120.08832 * 359.78584 * 15 14 13 19 19 F 1.35096 * 119.99977 * 179.97438 * 18 15 14 20 20 C 1.38385 * 120.00177 * 359.97438 * 18 15 14 21 21 C 1.53002 * 117.49788 * 133.68172 * 9 7 2 22 22 C 1.53003 * 117.49834 * 65.05916 * 9 7 2 23 23 H 0.97008 * 119.99622 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47151 * 54.87687 * 10 9 7 25 25 H 1.08996 * 109.47404 * 174.88326 * 10 9 7 26 26 H 1.07998 * 120.00528 * 0.02962 * 13 12 11 27 27 H 1.07995 * 119.95785 * 180.20828 * 14 13 12 28 28 H 1.08999 * 109.46682 * 120.01861 * 16 15 14 29 29 H 1.08989 * 109.47001 * 240.02041 * 16 15 14 30 30 H 0.96701 * 113.99809 * 180.02562 * 17 16 15 31 31 H 1.08007 * 120.03998 * 180.02562 * 20 18 15 32 32 H 1.08996 * 117.50269 * 359.97438 * 21 9 7 33 33 H 1.09000 * 117.49931 * 145.02384 * 21 9 7 34 34 H 1.08998 * 117.49750 * 214.97295 * 22 9 7 35 35 H 1.08995 * 117.50297 * 359.97438 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0801 -1.1967 0.0969 9 6 1.2570 -2.4955 -0.1372 10 6 0.6123 -3.0241 1.1457 11 8 1.6324 -3.3548 2.0901 12 6 1.2260 -3.8417 3.2921 13 6 -0.1275 -3.9924 3.5589 14 6 -0.5393 -4.4915 4.7793 15 6 0.3951 -4.8322 5.7396 16 6 -0.0575 -5.3715 7.0721 17 8 -1.4847 -5.4371 7.0994 18 6 1.7463 -4.6782 5.4788 19 9 2.6578 -5.0112 6.4187 20 6 2.1630 -4.1832 4.2556 21 6 1.8048 -3.5240 -1.1287 22 6 0.5235 -2.7539 -1.4548 23 1 -0.4850 0.8401 0.0004 24 1 -0.0387 -2.2582 1.5673 25 1 0.0260 -3.9142 0.9176 26 1 -0.8586 -3.7232 2.8110 27 1 -1.5926 -4.6117 4.9851 28 1 0.3549 -6.3697 7.2191 29 1 0.2913 -4.7134 7.8678 30 1 -1.8470 -5.7757 7.9296 31 1 3.2167 -4.0632 4.0514 32 1 2.7055 -3.2592 -1.6825 33 1 1.7060 -4.5775 -0.8671 34 1 -0.4181 -3.3009 -1.4078 35 1 0.5812 -1.9825 -2.2227 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404262328.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:57 Heat of formation + Delta-G solvation = -103.783917 kcal Electronic energy + Delta-G solvation = -19642.169550 eV Core-core repulsion = 16327.097973 eV Total energy + Delta-G solvation = -3315.071577 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -50.03183 -41.10320 -39.14877 -37.94145 -36.93574 -34.04480 -32.14974 -31.56254 -28.61271 -27.36112 -26.36283 -23.91237 -22.98782 -22.39767 -21.08182 -19.46180 -18.69357 -18.04914 -17.16445 -17.05672 -16.99983 -16.73303 -16.57853 -16.26002 -15.75908 -15.58124 -15.02024 -14.93032 -14.51545 -13.85096 -13.58147 -13.48920 -13.27356 -12.96530 -12.82907 -12.43083 -12.25569 -12.15172 -12.06510 -11.91025 -11.46360 -11.08926 -10.78697 -10.50153 -10.09424 -9.92979 -9.10421 -8.15237 -6.24590 0.07104 0.24782 1.41342 1.41761 1.49254 2.18247 2.41906 2.52224 3.13974 3.14613 3.30697 3.51779 3.77908 3.90444 4.07559 4.16670 4.21655 4.38683 4.41676 4.49821 4.51613 4.52616 4.67086 4.85659 4.96329 4.98120 5.01603 5.18363 5.28683 5.32676 5.51879 5.57488 5.72028 5.75093 6.34403 6.54845 6.78442 6.93682 7.43347 8.93529 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.022993 B = 0.004659 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.457018 B = 6008.945371 C = 6206.694063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.947 3.053 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.047 0.953 9 C 0.004 3.996 10 C 0.119 3.881 11 O -0.314 6.314 12 C 0.148 3.852 13 C -0.227 4.227 14 C -0.027 4.027 15 C -0.178 4.178 16 C 0.133 3.867 17 O -0.582 6.582 18 C 0.139 3.861 19 F -0.132 7.132 20 C -0.206 4.206 21 C -0.183 4.183 22 C -0.147 4.147 23 H 0.262 0.738 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.135 0.865 27 H 0.156 0.844 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.405 0.595 31 H 0.144 0.856 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.192 -10.873 12.293 16.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.773 3.227 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.004 3.996 10 C 0.044 3.956 11 O -0.227 6.227 12 C 0.101 3.899 13 C -0.246 4.246 14 C -0.045 4.045 15 C -0.179 4.179 16 C 0.056 3.944 17 O -0.391 6.391 18 C 0.119 3.881 19 F -0.110 7.110 20 C -0.226 4.226 21 C -0.220 4.220 22 C -0.184 4.184 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.173 0.827 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.256 0.744 31 H 0.162 0.838 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.058 -10.482 11.644 15.801 hybrid contribution 0.393 0.931 0.365 1.075 sum -1.665 -9.551 12.009 15.434 Atomic orbital electron populations 1.70044 1.06822 1.27379 1.50100 1.25603 0.95628 1.01712 0.94234 0.85791 0.78644 0.79591 0.78722 1.19520 1.20639 1.20269 1.20582 0.92646 0.90214 1.50999 0.93469 1.18873 1.00040 0.94320 0.86387 1.22336 0.88285 0.96743 0.88248 1.86135 1.37561 1.76830 1.22146 1.19115 0.92932 0.91823 0.86072 1.21560 0.94499 1.07881 1.00662 1.20768 1.00815 0.92759 0.90146 1.19863 0.90849 1.07764 0.99457 1.20618 0.81798 1.00073 0.91940 1.86373 1.19426 1.89291 1.44050 1.16869 0.85650 0.99589 0.85944 1.91478 1.66379 1.90008 1.63148 1.20282 1.00833 1.08875 0.92592 1.22975 0.97277 0.96390 1.05394 1.22521 0.94574 1.01521 0.99806 0.92888 0.93332 0.92866 0.84745 0.82659 0.90744 0.91089 0.74391 0.83827 0.90166 0.89043 0.89771 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.73 13.11 21.45 0.28 -50.45 16 2 C 0.03 1.58 5.42 84.66 0.46 2.04 16 3 Si 0.95 43.60 29.54 68.60 2.03 45.63 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.51 -28.01 8.74 25.60 0.22 -27.78 16 8 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 9 C 0.00 0.21 1.53 -52.93 -0.08 0.13 16 10 C 0.12 5.37 4.56 71.98 0.33 5.70 16 11 O -0.31 -14.05 10.06 -92.48 -0.93 -14.98 16 12 C 0.15 5.62 6.69 22.50 0.15 5.77 16 13 C -0.23 -7.69 9.04 22.37 0.20 -7.49 16 14 C -0.03 -0.77 9.37 22.25 0.21 -0.57 16 15 C -0.18 -4.76 5.89 -19.80 -0.12 -4.88 16 16 C 0.13 2.49 7.01 71.24 0.50 2.99 16 17 O -0.58 -9.92 12.13 -148.98 -1.81 -11.73 16 18 C 0.14 4.07 7.24 22.36 0.16 4.23 16 19 F -0.13 -3.52 16.80 44.97 0.76 -2.77 16 20 C -0.21 -6.99 9.97 22.41 0.22 -6.77 16 21 C -0.18 -7.73 9.96 30.60 0.30 -7.42 16 22 C -0.15 -6.56 9.68 30.60 0.30 -6.26 16 23 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 24 H 0.05 2.41 7.64 -2.39 -0.02 2.39 16 25 H 0.05 2.12 7.62 -2.39 -0.02 2.10 16 26 H 0.13 4.52 6.30 -2.91 -0.02 4.50 16 27 H 0.16 3.94 7.00 -2.91 -0.02 3.92 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.40 2.56 9.12 -74.06 -0.68 1.88 16 31 H 0.14 4.67 8.06 -2.91 -0.02 4.65 16 32 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.08 3.39 8.14 -2.39 -0.02 3.37 16 35 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -62.54 308.77 3.62 -58.92 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: 0.44 Total: 15.70 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 2.86 Total: -40.33 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: 0.28 Total: -50.45 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -2.74 Total: -26.72 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.76 Total: -2.77 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -62.54 3.62 -58.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404262328.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.861 kcal (2) G-P(sol) polarization free energy of solvation -62.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds