Wall clock time and date at job start Mon Mar 30 2020 07:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.08994 * 109.47158 * 305.96645 * 3 2 1 5 5 C 1.50695 * 109.47224 * 185.96669 * 3 2 1 6 6 H 1.08003 * 120.00009 * 245.60642 * 5 3 2 7 7 C 1.37877 * 120.00207 * 65.61062 * 5 3 2 8 8 N 1.31509 * 120.00325 * 196.91615 * 7 5 3 9 9 Si 1.86801 * 119.99840 * 16.91729 * 7 5 3 10 10 H 1.48504 * 109.47310 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47223 * 299.99952 * 9 7 5 12 12 H 1.48493 * 109.47399 * 59.99998 * 9 7 5 13 13 C 1.50703 * 109.47230 * 65.96631 * 3 2 1 14 14 O 1.21311 * 119.99750 * 94.99934 * 13 3 2 15 15 C 1.46667 * 119.99887 * 275.00431 * 13 3 2 16 16 C 1.40115 * 120.14563 * 359.97438 * 15 13 3 17 17 C 1.36496 * 120.03866 * 179.97438 * 16 15 13 18 18 C 1.39183 * 120.31386 * 0.02562 * 17 16 15 19 19 O 1.35662 * 119.85270 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99785 * 179.97438 * 19 18 17 21 21 C 1.38903 * 120.28456 * 0.02562 * 18 17 16 22 22 C 1.38013 * 119.96192 * 359.72014 * 21 18 17 23 23 F 1.35109 * 120.15718 * 180.27453 * 22 21 18 24 24 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 25 25 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 27 27 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 28 28 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 29 29 H 0.97003 * 120.00212 * 354.54355 * 8 7 5 30 30 H 1.08004 * 119.98056 * 359.97438 * 16 15 13 31 31 H 1.07999 * 119.84313 * 180.02562 * 17 16 15 32 32 H 1.08993 * 109.47653 * 300.00242 * 20 19 18 33 33 H 1.09002 * 109.46620 * 60.00049 * 20 19 18 34 34 H 1.08999 * 109.47373 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.02065 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5920 1.9862 -0.8317 5 6 3.5396 1.4451 -0.1477 6 1 4.1612 1.8026 0.6600 7 6 4.1183 0.9912 -1.3139 8 7 5.3953 0.6777 -1.3357 9 14 3.0885 0.8217 -2.8631 10 1 3.9396 0.3174 -3.9707 11 1 1.9787 -0.1340 -2.6177 12 1 2.5282 2.1464 -3.2326 13 6 1.6618 2.1091 1.2977 14 8 2.4513 2.1359 2.2183 15 6 0.3392 2.7251 1.4475 16 6 -0.5748 2.6962 0.3859 17 6 -1.8053 3.2698 0.5279 18 6 -2.1592 3.8860 1.7246 19 8 -3.3848 4.4527 1.8557 20 6 -3.6842 5.0679 3.1103 21 6 -1.2630 3.9233 2.7852 22 6 -0.0177 3.3424 2.6561 23 9 0.8551 3.3715 3.6870 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9480 0.8399 -0.5552 30 1 -0.3056 2.2198 -0.5452 31 1 -2.5075 3.2453 -0.2922 32 1 -3.6189 4.3244 3.9045 33 1 -2.9694 5.8682 3.3022 34 1 -4.6928 5.4803 3.0813 35 1 -1.5422 4.4022 3.7120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404823523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:29 Heat of formation + Delta-G solvation = -95.482638 kcal Electronic energy + Delta-G solvation = -20393.309889 eV Core-core repulsion = 17078.598283 eV Total energy + Delta-G solvation = -3314.711606 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.74095 -40.36092 -38.93417 -36.87521 -34.64346 -32.16802 -30.85164 -30.34520 -28.13754 -27.59610 -24.10558 -22.85454 -22.37361 -21.27903 -18.76758 -18.63926 -17.46185 -17.00844 -16.18266 -16.11650 -15.73083 -15.39954 -14.99113 -14.60923 -14.30091 -13.79622 -13.53819 -13.22343 -12.77271 -12.70209 -12.52002 -12.40250 -12.27992 -11.83163 -11.57436 -11.34148 -11.20427 -10.88733 -10.49475 -10.41528 -9.91044 -9.73418 -8.99738 -8.88075 -8.64413 -8.28702 -8.18102 -6.46491 -4.05908 0.81099 1.15343 2.92139 2.93519 3.33461 3.38575 3.56756 3.84523 4.17544 4.47020 4.53338 4.68437 4.76090 4.84446 4.89525 5.10066 5.19404 5.23089 5.40116 5.70864 5.79821 5.83323 5.92717 5.97024 6.05551 6.25151 6.44662 6.45297 6.49056 6.56075 6.72914 7.03881 7.08574 7.25090 7.92452 8.41274 8.53752 8.97544 9.63108 10.94874 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.005952 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.810504 B = 4702.854794 C = 5266.671666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.121 4.121 3 C -0.012 4.012 4 H 0.042 0.958 5 C -0.594 4.594 6 H 0.068 0.932 7 C 0.031 3.969 8 N -0.904 5.904 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.270 1.270 12 H -0.281 1.281 13 C 0.406 3.594 14 O -0.446 6.446 15 C -0.229 4.229 16 C -0.007 4.007 17 C -0.178 4.178 18 C 0.176 3.824 19 O -0.309 6.309 20 C 0.023 3.977 21 C -0.268 4.268 22 C 0.188 3.812 23 F -0.116 7.116 24 H 0.053 0.947 25 H 0.047 0.953 26 H 0.052 0.948 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.269 0.731 30 H 0.158 0.842 31 H 0.141 0.859 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.663 6.044 4.530 21.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.159 4.159 3 C -0.032 4.032 4 H 0.060 0.940 5 C -0.631 4.631 6 H 0.087 0.913 7 C -0.174 4.174 8 N -0.537 5.537 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.196 1.196 12 H -0.208 1.208 13 C 0.282 3.718 14 O -0.320 6.320 15 C -0.231 4.231 16 C -0.025 4.025 17 C -0.197 4.197 18 C 0.130 3.870 19 O -0.222 6.222 20 C -0.072 4.072 21 C -0.288 4.288 22 C 0.168 3.832 23 F -0.094 7.094 24 H 0.072 0.928 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.175 0.825 31 H 0.159 0.841 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -19.290 5.560 3.364 20.355 hybrid contribution 0.096 0.721 2.147 2.266 sum -19.193 6.281 5.511 20.934 Atomic orbital electron populations 1.22330 0.98252 1.00969 1.00857 1.21947 0.92739 0.98205 1.02968 1.19440 0.99607 0.92712 0.91432 0.93984 1.21924 0.88900 1.48532 1.03778 0.91344 1.25767 0.97814 0.92702 1.01117 1.70826 1.07212 1.41019 1.34672 0.84126 0.75730 0.77208 0.76133 1.20979 1.19645 1.20753 1.22623 0.83013 0.75573 0.90581 1.90455 1.50787 1.48968 1.41776 1.21185 1.00260 1.07540 0.94138 1.21338 0.90738 0.91989 0.98443 1.20198 0.98531 1.04178 0.96751 1.18972 0.83646 0.91056 0.93357 1.86049 1.30070 1.69288 1.36759 1.23143 1.02390 0.97373 0.84272 1.21054 0.94903 1.11362 1.01463 1.17690 0.86579 0.94678 0.84288 1.91580 1.68071 1.93635 1.56100 0.92846 0.93428 0.92888 0.90713 0.92436 0.92034 0.82517 0.84087 0.92305 0.92270 0.87944 0.84068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 8.24 37.15 0.31 -2.39 16 2 C -0.12 -2.53 5.05 -26.73 -0.14 -2.67 16 3 C -0.01 -0.29 1.34 -92.92 -0.12 -0.41 16 4 H 0.04 0.91 5.39 -51.93 -0.28 0.63 16 5 C -0.59 -17.02 8.63 -34.44 -0.30 -17.32 16 6 H 0.07 2.22 7.22 -52.48 -0.38 1.84 16 7 C 0.03 0.89 5.31 -17.82 -0.09 0.80 16 8 N -0.90 -27.89 13.69 55.43 0.76 -27.13 16 9 Si 1.04 24.02 26.28 -169.99 -4.47 19.55 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.27 -5.54 5.71 56.52 0.32 -5.22 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 C 0.41 9.24 5.89 -30.91 -0.18 9.06 16 14 O -0.45 -11.74 14.77 5.53 0.08 -11.66 16 15 C -0.23 -4.18 4.96 -105.01 -0.52 -4.70 16 16 C -0.01 -0.11 6.98 -39.51 -0.28 -0.38 16 17 C -0.18 -2.21 9.91 -39.86 -0.40 -2.61 16 18 C 0.18 2.19 6.70 -38.98 -0.26 1.93 16 19 O -0.31 -3.29 10.48 -18.69 -0.20 -3.49 16 20 C 0.02 0.16 9.80 101.05 0.99 1.15 16 21 C -0.27 -3.57 9.00 -39.42 -0.35 -3.93 16 22 C 0.19 3.21 7.29 -38.88 -0.28 2.93 16 23 F -0.12 -2.22 15.55 2.25 0.04 -2.19 16 24 H 0.05 0.75 6.53 -51.93 -0.34 0.41 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.83 5.28 -51.93 -0.27 0.56 16 27 H 0.07 1.62 4.81 -51.93 -0.25 1.37 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.27 8.41 8.73 -40.82 -0.36 8.06 16 30 H 0.16 2.17 4.22 -52.48 -0.22 1.95 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.06 0.37 7.65 -51.93 -0.40 -0.03 16 33 H 0.06 0.37 7.65 -51.93 -0.40 -0.02 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.14 1.50 6.27 -52.49 -0.33 1.17 16 LS Contribution 286.04 15.07 4.31 4.31 Total: -1.00 -33.38 286.04 -4.89 -38.27 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -3.79 Total: 0.87 kcal Atomic # 6 Polarization: -16.91 SS G_CDS: -1.63 Total: -18.53 kcal Atomic # 7 Polarization: -27.89 SS G_CDS: 0.76 Total: -27.13 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.11 Total: -15.15 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.19 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.47 Total: 19.55 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.38 -4.89 -38.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404823523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.210 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds