Wall clock time and date at job start Mon Mar 30 2020 07:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53003 * 109.47084 * 2 1 4 4 H 1.08994 * 109.47158 * 305.96645 * 3 2 1 5 5 C 1.50695 * 109.47224 * 185.96669 * 3 2 1 6 6 H 1.08003 * 120.00009 * 245.60642 * 5 3 2 7 7 C 1.37877 * 120.00207 * 65.61062 * 5 3 2 8 8 N 1.31509 * 120.00325 * 196.91615 * 7 5 3 9 9 Si 1.86801 * 119.99840 * 16.91729 * 7 5 3 10 10 H 1.48504 * 109.47310 * 180.02562 * 9 7 5 11 11 H 1.48505 * 109.47223 * 299.99952 * 9 7 5 12 12 H 1.48493 * 109.47399 * 59.99998 * 9 7 5 13 13 C 1.50703 * 109.47230 * 65.96631 * 3 2 1 14 14 O 1.21311 * 119.99750 * 94.99934 * 13 3 2 15 15 C 1.46667 * 119.99887 * 275.00431 * 13 3 2 16 16 C 1.40115 * 120.14563 * 359.97438 * 15 13 3 17 17 C 1.36496 * 120.03866 * 179.97438 * 16 15 13 18 18 C 1.39183 * 120.31386 * 0.02562 * 17 16 15 19 19 O 1.35662 * 119.85270 * 180.02562 * 18 17 16 20 20 C 1.42903 * 116.99785 * 179.97438 * 19 18 17 21 21 C 1.38903 * 120.28456 * 0.02562 * 18 17 16 22 22 C 1.38013 * 119.96192 * 359.72014 * 21 18 17 23 23 F 1.35109 * 120.15718 * 180.27453 * 22 21 18 24 24 H 1.09005 * 109.47402 * 60.00372 * 1 2 3 25 25 H 1.09006 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47632 * 300.00255 * 1 2 3 27 27 H 1.09000 * 109.47676 * 240.00300 * 2 1 3 28 28 H 1.09005 * 109.47402 * 119.99627 * 2 1 3 29 29 H 0.97003 * 120.00212 * 354.54355 * 8 7 5 30 30 H 1.08004 * 119.98056 * 359.97438 * 16 15 13 31 31 H 1.07999 * 119.84313 * 180.02562 * 17 16 15 32 32 H 1.08993 * 109.47653 * 300.00242 * 20 19 18 33 33 H 1.09002 * 109.46620 * 60.00049 * 20 19 18 34 34 H 1.08999 * 109.47373 * 180.02562 * 20 19 18 35 35 H 1.07997 * 120.02065 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5920 1.9862 -0.8317 5 6 3.5396 1.4451 -0.1477 6 1 4.1612 1.8026 0.6600 7 6 4.1183 0.9912 -1.3139 8 7 5.3953 0.6777 -1.3357 9 14 3.0885 0.8217 -2.8631 10 1 3.9396 0.3174 -3.9707 11 1 1.9787 -0.1340 -2.6177 12 1 2.5282 2.1464 -3.2326 13 6 1.6618 2.1091 1.2977 14 8 2.4513 2.1359 2.2183 15 6 0.3392 2.7251 1.4475 16 6 -0.5748 2.6962 0.3859 17 6 -1.8053 3.2698 0.5279 18 6 -2.1592 3.8860 1.7246 19 8 -3.3848 4.4527 1.8557 20 6 -3.6842 5.0679 3.1103 21 6 -1.2630 3.9233 2.7852 22 6 -0.0177 3.3424 2.6561 23 9 0.8551 3.3715 3.6870 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 5.9480 0.8399 -0.5552 30 1 -0.3056 2.2198 -0.5452 31 1 -2.5075 3.2453 -0.2922 32 1 -3.6189 4.3244 3.9045 33 1 -2.9694 5.8682 3.3022 34 1 -4.6928 5.4803 3.0813 35 1 -1.5422 4.4022 3.7120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404823523.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:29 Heat of formation + Delta-G solvation = -118.766951 kcal Electronic energy + Delta-G solvation = -20394.319572 eV Core-core repulsion = 17078.598283 eV Total energy + Delta-G solvation = -3315.721290 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.09798 -41.45218 -40.40644 -38.07910 -36.44587 -34.19234 -31.95991 -31.53681 -29.82056 -28.37626 -25.73006 -24.13576 -23.85215 -22.69086 -20.46533 -19.77387 -19.35310 -18.14721 -17.67019 -17.15122 -16.98279 -16.57019 -16.43496 -15.85217 -15.56132 -15.39859 -15.09709 -14.59674 -14.35246 -14.19215 -14.02414 -13.64005 -13.42485 -13.34408 -12.84667 -12.59447 -12.34592 -12.29959 -12.15905 -11.83851 -11.54944 -11.42466 -10.95601 -10.53837 -10.24474 -10.07846 -9.40742 -8.79529 -6.40123 -0.44511 0.07431 1.46183 1.49958 1.60848 1.77934 2.13229 2.55317 2.56346 3.03070 3.05545 3.18367 3.54157 3.78975 4.06235 4.18982 4.31158 4.34962 4.38002 4.39816 4.50321 4.56943 4.73736 4.77734 4.88103 4.96682 5.04578 5.14308 5.17835 5.22449 5.36428 5.48768 5.57815 5.90835 6.01442 6.18681 6.53655 6.79164 7.41282 8.60233 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.027749 B = 0.005952 C = 0.005315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.810504 B = 4702.854794 C = 5266.671666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.117 4.117 3 C -0.018 4.018 4 H 0.074 0.926 5 C -0.607 4.607 6 H 0.004 0.996 7 C -0.023 4.023 8 N -0.937 5.937 9 Si 1.081 2.919 10 H -0.293 1.293 11 H -0.220 1.220 12 H -0.249 1.249 13 C 0.401 3.599 14 O -0.508 6.508 15 C -0.260 4.260 16 C -0.001 4.001 17 C -0.163 4.163 18 C 0.194 3.806 19 O -0.307 6.307 20 C 0.009 3.991 21 C -0.260 4.260 22 C 0.164 3.836 23 F -0.140 7.140 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.245 0.755 30 H 0.171 0.829 31 H 0.180 0.820 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.130 0.870 35 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.334 6.773 2.590 26.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.155 4.155 3 C -0.037 4.037 4 H 0.092 0.908 5 C -0.644 4.644 6 H 0.022 0.978 7 C -0.219 4.219 8 N -0.573 5.573 9 Si 0.898 3.102 10 H -0.219 1.219 11 H -0.143 1.143 12 H -0.173 1.173 13 C 0.283 3.717 14 O -0.387 6.387 15 C -0.262 4.262 16 C -0.018 4.018 17 C -0.181 4.181 18 C 0.146 3.854 19 O -0.219 6.219 20 C -0.084 4.084 21 C -0.279 4.279 22 C 0.144 3.856 23 F -0.118 7.118 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.054 0.946 30 H 0.188 0.812 31 H 0.197 0.803 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.148 0.852 35 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -25.008 6.306 1.459 25.832 hybrid contribution 1.769 0.621 2.894 3.448 sum -23.239 6.927 4.353 24.638 Atomic orbital electron populations 1.22283 0.93554 1.03172 1.02641 1.21808 0.96854 0.95523 1.01354 1.19488 0.95898 0.95137 0.93176 0.90796 1.22072 0.92086 1.48169 1.02112 0.97772 1.27655 0.97946 0.91297 1.05050 1.70996 1.08679 1.43997 1.33613 0.83747 0.75565 0.80093 0.70780 1.21891 1.14298 1.17275 1.22973 0.84701 0.74628 0.89443 1.90430 1.53156 1.51720 1.43353 1.20785 0.98694 1.10285 0.96456 1.21429 0.90817 0.92035 0.97553 1.20548 0.97859 1.02109 0.97630 1.19124 0.83936 0.89520 0.92807 1.86082 1.28476 1.68646 1.38717 1.23528 1.04226 0.97726 0.82961 1.21239 0.93231 1.10357 1.03065 1.18060 0.87745 0.96101 0.83688 1.91518 1.69227 1.93994 1.57080 0.89472 0.91119 0.92681 0.91094 0.95453 0.94586 0.81189 0.80279 0.91402 0.91545 0.85155 0.81592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.50 8.24 71.98 0.59 -3.90 16 2 C -0.12 -4.81 5.05 30.59 0.15 -4.66 16 3 C -0.02 -0.83 1.34 -12.29 -0.02 -0.85 16 4 H 0.07 3.01 5.39 -2.39 -0.01 3.00 16 5 C -0.61 -36.88 8.63 25.60 0.22 -36.66 16 6 H 0.00 0.28 7.22 -2.91 -0.02 0.26 16 7 C -0.02 -1.37 5.31 84.66 0.45 -0.92 16 8 N -0.94 -61.20 13.69 21.45 0.29 -60.90 16 9 Si 1.08 46.64 26.28 68.60 1.80 48.44 16 10 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 11 H -0.22 -7.73 5.71 99.48 0.57 -7.16 16 12 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 13 C 0.40 19.01 5.89 27.89 0.16 19.17 16 14 O -0.51 -29.09 14.77 -3.13 -0.05 -29.14 16 15 C -0.26 -9.29 4.96 -20.11 -0.10 -9.39 16 16 C 0.00 -0.02 6.98 22.32 0.16 0.14 16 17 C -0.16 -3.15 9.91 22.09 0.22 -2.93 16 18 C 0.19 3.90 6.70 22.66 0.15 4.05 16 19 O -0.31 -4.86 10.48 -89.78 -0.94 -5.80 16 20 C 0.01 0.08 9.80 113.37 1.11 1.20 16 21 C -0.26 -6.17 9.00 22.38 0.20 -5.97 16 22 C 0.16 5.54 7.29 22.72 0.17 5.71 16 23 F -0.14 -5.63 15.55 44.97 0.70 -4.93 16 24 H 0.09 1.89 6.53 -2.38 -0.02 1.87 16 25 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 26 H 0.05 1.55 5.28 -2.39 -0.01 1.54 16 27 H 0.07 2.92 4.81 -2.39 -0.01 2.91 16 28 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.25 16.70 8.73 -92.71 -0.81 15.89 16 30 H 0.17 3.80 4.22 -2.91 -0.01 3.78 16 31 H 0.18 2.18 8.06 -2.91 -0.02 2.16 16 32 H 0.07 0.53 7.65 -2.39 -0.02 0.51 16 33 H 0.07 0.54 7.65 -2.39 -0.02 0.52 16 34 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.17 2.99 6.27 -2.91 -0.02 2.97 16 Total: -1.00 -83.03 286.04 6.23 -76.80 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: 0.95 Total: 10.55 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.47 Total: -35.01 kcal Atomic # 7 Polarization: -61.20 SS G_CDS: 0.29 Total: -60.90 kcal Atomic # 8 Polarization: -33.96 SS G_CDS: -0.99 Total: -34.94 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.70 Total: -4.93 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.80 Total: 48.44 kcal Total: -83.03 6.23 -76.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404823523.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.967 kcal (2) G-P(sol) polarization free energy of solvation -83.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds