Wall clock time and date at job start Mon Mar 30 2020 07:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00356 * 2 1 4 4 C 1.38775 * 120.04380 * 0.22507 * 3 2 1 5 5 C 1.38126 * 119.99428 * 180.30497 * 4 3 2 6 6 C 1.38248 * 120.08322 * 359.71973 * 5 4 3 7 7 C 1.50699 * 119.95904 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.82301 * 144.32234 * 7 6 5 9 9 C 1.54385 * 109.83089 * 265.21042 * 7 6 5 10 10 C 1.55303 * 102.25643 * 140.86832 * 9 7 6 11 11 C 1.54947 * 100.94106 * 325.86684 * 10 9 7 12 12 H 1.08993 * 110.31106 * 277.52603 * 11 10 9 13 13 C 1.50701 * 110.30981 * 155.35453 * 11 10 9 14 14 H 1.08007 * 119.99935 * 0.02562 * 13 11 10 15 15 C 1.37872 * 119.99892 * 179.97438 * 13 11 10 16 16 N 1.31518 * 120.00271 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99873 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47082 * 59.99847 * 17 15 13 19 19 H 1.48497 * 109.46886 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46733 * 300.00066 * 17 15 13 21 21 O 1.43236 * 109.83152 * 23.43503 * 7 6 5 22 22 C 1.38476 * 120.08291 * 0.02669 * 6 5 4 23 23 F 1.35105 * 119.99402 * 179.97438 * 22 6 5 24 24 C 1.38385 * 120.00628 * 359.97215 * 22 6 5 25 25 H 1.09007 * 109.46684 * 60.00285 * 1 2 3 26 26 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47186 * 300.00949 * 1 2 3 28 28 H 1.08006 * 119.99839 * 0.05020 * 4 3 2 29 29 H 1.08009 * 119.96053 * 179.74738 * 5 4 3 30 30 H 1.09003 * 110.84593 * 259.06393 * 9 7 6 31 31 H 1.09004 * 110.84739 * 22.67763 * 9 7 6 32 32 H 1.09005 * 111.12038 * 83.78139 * 10 9 7 33 33 H 1.08994 * 111.12613 * 207.90155 * 10 9 7 34 34 H 0.96994 * 119.99766 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.03741 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2912 2.3753 0.0047 5 6 1.9193 3.6054 -0.0017 6 6 3.2999 3.6785 -0.0069 7 6 3.9823 5.0221 -0.0132 8 1 4.8946 4.9762 0.5816 9 6 4.3224 5.4300 -1.4629 10 6 4.0170 6.9527 -1.4572 11 6 2.8164 7.0082 -0.4792 12 1 1.8915 6.7638 -1.0013 13 6 2.7177 8.3737 0.1507 14 1 3.4321 9.1410 -0.1087 15 6 1.7147 8.6436 1.0574 16 7 0.8444 7.7094 1.3729 17 14 1.5919 10.3365 1.8377 18 1 1.4010 11.3579 0.7769 19 1 0.4368 10.3689 2.7704 20 1 2.8406 10.6280 2.5867 21 8 3.1021 6.0168 0.5230 22 6 4.0564 2.5187 -0.0063 23 9 5.4054 2.5922 -0.0119 24 6 3.4307 1.2844 0.0001 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 0.2125 2.3196 0.0092 29 1 1.3313 4.5114 -0.0021 30 1 5.3744 5.2461 -1.6810 31 1 3.6809 4.9083 -2.1733 32 1 4.8635 7.5216 -1.0728 33 1 3.7319 7.2999 -2.4503 34 1 0.1387 7.8995 2.0105 35 1 4.0203 0.3794 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404976456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:36 Heat of formation + Delta-G solvation = -106.535374 kcal Electronic energy + Delta-G solvation = -20199.025573 eV Core-core repulsion = 16883.834684 eV Total energy + Delta-G solvation = -3315.190889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.65945 -39.98936 -38.49770 -36.65342 -32.74363 -31.06220 -30.93175 -30.25926 -27.99530 -26.99602 -24.55917 -22.58943 -21.99522 -20.38040 -20.11839 -18.33124 -16.92922 -16.49258 -15.85183 -15.84088 -15.72946 -15.21835 -14.94174 -14.67152 -14.29349 -14.00076 -13.45869 -12.81339 -12.56373 -12.45662 -12.23545 -12.06435 -11.94965 -11.71597 -11.12893 -10.90327 -10.81879 -10.62711 -10.44734 -10.36278 -10.20454 -9.80793 -9.15036 -8.63958 -8.60247 -8.12785 -7.79541 -6.05087 -4.17066 1.38378 1.55464 3.17240 3.31106 3.35788 3.38388 3.82939 4.40294 4.63671 4.87000 4.93805 5.09724 5.11503 5.17332 5.20718 5.38316 5.45547 5.49680 5.55422 5.70318 5.74486 6.05622 6.16965 6.29923 6.30334 6.49655 6.58707 6.62102 6.67614 6.78969 6.91684 6.96392 7.42086 7.53011 7.85985 8.22045 8.57178 8.97399 9.54026 11.02837 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.005497 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.397164 B = 5092.501773 C = 5934.580405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.141 3.859 4 C -0.218 4.218 5 C -0.021 4.021 6 C -0.149 4.149 7 C 0.115 3.885 8 H 0.071 0.929 9 C -0.145 4.145 10 C -0.147 4.147 11 C 0.209 3.791 12 H 0.030 0.970 13 C -0.533 4.533 14 H 0.063 0.937 15 C 0.079 3.921 16 N -0.865 5.865 17 Si 0.893 3.107 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.275 1.275 21 O -0.349 6.349 22 C 0.134 3.866 23 F -0.136 7.136 24 C -0.197 4.197 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.131 0.869 29 H 0.153 0.847 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.262 0.738 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.557 -12.524 -4.187 13.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.096 3.904 4 C -0.237 4.237 5 C -0.039 4.039 6 C -0.151 4.151 7 C 0.056 3.944 8 H 0.089 0.911 9 C -0.183 4.183 10 C -0.184 4.184 11 C 0.154 3.846 12 H 0.048 0.952 13 C -0.571 4.571 14 H 0.081 0.919 15 C -0.127 4.127 16 N -0.502 5.502 17 Si 0.720 3.280 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.201 1.201 21 O -0.268 6.268 22 C 0.115 3.885 23 F -0.115 7.115 24 C -0.216 4.216 25 H 0.075 0.925 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.149 0.851 29 H 0.170 0.830 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.436 -12.755 -3.874 13.338 hybrid contribution -0.031 0.869 0.336 0.933 sum 0.405 -11.886 -3.538 12.408 Atomic orbital electron populations 1.23058 0.78261 1.03664 1.01767 1.86009 1.21468 1.26891 1.88887 1.18565 0.91339 0.84238 0.96294 1.21333 1.00311 0.92046 1.10020 1.20984 0.93436 0.98001 0.91508 1.20520 0.94711 0.95049 1.04774 1.21246 0.92922 0.86082 0.94175 0.91131 1.23100 1.00957 0.97902 0.96346 1.23335 1.01077 0.93393 1.00636 1.20601 0.91165 0.87675 0.85183 0.95222 1.21077 1.13523 0.95233 1.27236 0.91931 1.25058 0.95057 0.96800 0.95797 1.69989 1.15183 1.32676 1.32312 0.86669 0.77698 0.84373 0.79278 1.20111 1.21193 1.20060 1.88924 1.64458 1.35097 1.38328 1.17087 0.76667 0.93078 1.01693 1.91468 1.29077 1.97138 1.93767 1.20028 0.92404 0.97093 1.12086 0.92488 0.88413 0.92399 0.85089 0.82976 0.91509 0.91593 0.91448 0.91787 0.92845 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.21 10.50 -19.42 -0.20 -4.42 16 3 C 0.14 2.11 6.69 -39.22 -0.26 1.85 16 4 C -0.22 -3.38 9.04 -39.42 -0.36 -3.74 16 5 C -0.02 -0.39 9.35 -39.62 -0.37 -0.76 16 6 C -0.15 -2.81 4.94 -104.53 -0.52 -3.33 16 7 C 0.12 2.38 3.50 -27.16 -0.10 2.28 16 8 H 0.07 1.45 7.83 -51.93 -0.41 1.04 16 9 C -0.15 -2.67 6.53 -24.78 -0.16 -2.83 16 10 C -0.15 -3.01 6.53 -24.48 -0.16 -3.17 16 11 C 0.21 5.25 3.23 -26.85 -0.09 5.16 16 12 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 13 C -0.53 -14.72 8.79 -34.44 -0.30 -15.02 16 14 H 0.06 1.68 7.76 -52.48 -0.41 1.27 16 15 C 0.08 2.19 5.43 -17.82 -0.10 2.09 16 16 N -0.87 -24.95 13.05 55.43 0.72 -24.23 16 17 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 O -0.35 -8.86 9.21 -35.23 -0.32 -9.18 16 22 C 0.13 2.29 7.24 -39.44 -0.29 2.00 16 23 F -0.14 -2.28 16.58 2.25 0.04 -2.25 16 24 C -0.20 -3.02 9.97 -39.37 -0.39 -3.42 16 25 H 0.06 0.48 7.67 -51.92 -0.40 0.08 16 26 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 28 H 0.13 1.71 6.30 -52.48 -0.33 1.38 16 29 H 0.15 3.16 7.32 -52.48 -0.38 2.78 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.07 1.15 7.84 -51.93 -0.41 0.75 16 32 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 LS Contribution 300.58 15.07 4.53 4.53 Total: -1.00 -30.04 300.58 -6.75 -36.80 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -4.40 Total: 0.29 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: -2.10 Total: -17.63 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.72 Total: -24.23 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: -0.53 Total: -13.60 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.04 -6.75 -36.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404976456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.740 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds