Wall clock time and date at job start Mon Mar 30 2020 07:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00356 * 2 1 4 4 C 1.38775 * 120.04380 * 0.22507 * 3 2 1 5 5 C 1.38126 * 119.99428 * 180.30497 * 4 3 2 6 6 C 1.38248 * 120.08322 * 359.71973 * 5 4 3 7 7 C 1.50699 * 119.95904 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.82301 * 144.32234 * 7 6 5 9 9 C 1.54385 * 109.83089 * 265.21042 * 7 6 5 10 10 C 1.55303 * 102.25643 * 140.86832 * 9 7 6 11 11 C 1.54947 * 100.94106 * 325.86684 * 10 9 7 12 12 H 1.08993 * 110.31106 * 277.52603 * 11 10 9 13 13 C 1.50701 * 110.30981 * 155.35453 * 11 10 9 14 14 H 1.08007 * 119.99935 * 0.02562 * 13 11 10 15 15 C 1.37872 * 119.99892 * 179.97438 * 13 11 10 16 16 N 1.31518 * 120.00271 * 0.02562 * 15 13 11 17 17 Si 1.86807 * 119.99873 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47082 * 59.99847 * 17 15 13 19 19 H 1.48497 * 109.46886 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46733 * 300.00066 * 17 15 13 21 21 O 1.43236 * 109.83152 * 23.43503 * 7 6 5 22 22 C 1.38476 * 120.08291 * 0.02669 * 6 5 4 23 23 F 1.35105 * 119.99402 * 179.97438 * 22 6 5 24 24 C 1.38385 * 120.00628 * 359.97215 * 22 6 5 25 25 H 1.09007 * 109.46684 * 60.00285 * 1 2 3 26 26 H 1.08998 * 109.47435 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47186 * 300.00949 * 1 2 3 28 28 H 1.08006 * 119.99839 * 0.05020 * 4 3 2 29 29 H 1.08009 * 119.96053 * 179.74738 * 5 4 3 30 30 H 1.09003 * 110.84593 * 259.06393 * 9 7 6 31 31 H 1.09004 * 110.84739 * 22.67763 * 9 7 6 32 32 H 1.09005 * 111.12038 * 83.78139 * 10 9 7 33 33 H 1.08994 * 111.12613 * 207.90155 * 10 9 7 34 34 H 0.96994 * 119.99766 * 180.02562 * 16 15 13 35 35 H 1.08002 * 120.03741 * 179.97438 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2912 2.3753 0.0047 5 6 1.9193 3.6054 -0.0017 6 6 3.2999 3.6785 -0.0069 7 6 3.9823 5.0221 -0.0132 8 1 4.8946 4.9762 0.5816 9 6 4.3224 5.4300 -1.4629 10 6 4.0170 6.9527 -1.4572 11 6 2.8164 7.0082 -0.4792 12 1 1.8915 6.7638 -1.0013 13 6 2.7177 8.3737 0.1507 14 1 3.4321 9.1410 -0.1087 15 6 1.7147 8.6436 1.0574 16 7 0.8444 7.7094 1.3729 17 14 1.5919 10.3365 1.8377 18 1 1.4010 11.3579 0.7769 19 1 0.4368 10.3689 2.7704 20 1 2.8406 10.6280 2.5867 21 8 3.1021 6.0168 0.5230 22 6 4.0564 2.5187 -0.0063 23 9 5.4054 2.5922 -0.0119 24 6 3.4307 1.2844 0.0001 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5140 0.8899 28 1 0.2125 2.3196 0.0092 29 1 1.3313 4.5114 -0.0021 30 1 5.3744 5.2461 -1.6810 31 1 3.6809 4.9083 -2.1733 32 1 4.8635 7.5216 -1.0728 33 1 3.7319 7.2999 -2.4503 34 1 0.1387 7.8995 2.0105 35 1 4.0203 0.3794 0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404976456.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:36 Heat of formation + Delta-G solvation = -124.099866 kcal Electronic energy + Delta-G solvation = -20199.787226 eV Core-core repulsion = 16883.834684 eV Total energy + Delta-G solvation = -3315.952542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 266.110 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.97654 -41.20842 -40.06011 -37.97979 -34.76674 -32.74850 -32.38264 -31.65748 -29.47225 -28.13618 -26.33076 -24.00335 -23.37310 -22.14075 -21.65637 -19.50981 -18.67109 -18.08725 -17.24980 -17.06450 -16.94353 -16.67219 -16.38404 -16.31900 -15.72605 -15.56818 -14.93006 -14.38613 -14.15752 -13.75686 -13.67642 -13.51411 -13.28243 -13.11257 -12.78886 -12.41822 -12.39316 -12.27104 -12.18054 -11.91905 -11.62980 -11.51499 -11.03677 -10.69790 -9.99183 -9.90087 -9.15151 -8.14874 -6.34758 0.08725 0.24233 1.41865 1.44669 1.51898 2.15792 2.41718 2.51101 3.04639 3.35001 3.56363 3.72402 3.76079 3.86543 4.00997 4.14465 4.25600 4.34995 4.41229 4.46484 4.50613 4.63910 4.73106 4.76056 4.91804 5.00343 5.03073 5.11431 5.15065 5.26762 5.47185 5.61201 5.64638 5.76252 6.18299 6.30526 6.59545 6.99909 7.40883 8.92964 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.023166 B = 0.005497 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.397164 B = 5092.501773 C = 5934.580405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.322 6.322 3 C 0.151 3.849 4 C -0.211 4.211 5 C -0.039 4.039 6 C -0.169 4.169 7 C 0.107 3.893 8 H 0.067 0.933 9 C -0.131 4.131 10 C -0.139 4.139 11 C 0.203 3.797 12 H 0.001 0.999 13 C -0.557 4.557 14 H 0.065 0.935 15 C 0.026 3.974 16 N -0.899 5.899 17 Si 0.960 3.040 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.273 1.273 21 O -0.380 6.380 22 C 0.133 3.867 23 F -0.135 7.135 24 C -0.191 4.191 25 H 0.065 0.935 26 H 0.128 0.872 27 H 0.062 0.938 28 H 0.154 0.846 29 H 0.118 0.882 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.262 0.738 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.846 -13.803 -4.603 14.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.235 6.235 3 C 0.105 3.895 4 C -0.230 4.230 5 C -0.057 4.057 6 C -0.170 4.170 7 C 0.048 3.952 8 H 0.085 0.915 9 C -0.169 4.169 10 C -0.177 4.177 11 C 0.148 3.852 12 H 0.018 0.982 13 C -0.595 4.595 14 H 0.083 0.917 15 C -0.177 4.177 16 N -0.536 5.536 17 Si 0.784 3.216 18 H -0.188 1.188 19 H -0.208 1.208 20 H -0.198 1.198 21 O -0.300 6.300 22 C 0.113 3.887 23 F -0.114 7.114 24 C -0.210 4.210 25 H 0.084 0.916 26 H 0.146 0.854 27 H 0.080 0.920 28 H 0.171 0.829 29 H 0.136 0.864 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.730 -14.042 -4.304 14.705 hybrid contribution -0.174 1.125 0.462 1.229 sum 0.556 -12.917 -3.841 13.487 Atomic orbital electron populations 1.23428 0.76018 1.05988 1.02423 1.86029 1.23708 1.25511 1.88279 1.18588 0.91373 0.84721 0.94829 1.21463 1.01538 0.91107 1.08866 1.20722 0.93311 0.98006 0.93687 1.20342 0.94973 0.94746 1.06976 1.21400 0.92219 0.86225 0.95364 0.91473 1.23045 1.02759 0.96040 0.95043 1.23224 0.99004 0.95214 1.00221 1.20472 0.91953 0.86910 0.85868 0.98182 1.21514 1.13720 0.96675 1.27553 0.91731 1.25915 0.94718 1.00688 0.96364 1.70133 1.15810 1.34706 1.32993 0.85608 0.77624 0.79834 0.78502 1.18811 1.20816 1.19790 1.88827 1.65596 1.36383 1.39230 1.17039 0.76631 0.93048 1.01973 1.91466 1.28920 1.97160 1.93805 1.20275 0.92898 0.97162 1.10652 0.91590 0.85390 0.91969 0.82882 0.86381 0.88745 0.90779 0.91427 0.90016 0.92913 0.82091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -7.52 10.50 -92.41 -0.97 -8.49 16 3 C 0.15 4.21 6.69 22.50 0.15 4.36 16 4 C -0.21 -6.36 9.04 22.37 0.20 -6.16 16 5 C -0.04 -1.48 9.35 22.25 0.21 -1.27 16 6 C -0.17 -6.44 4.94 -19.81 -0.10 -6.54 16 7 C 0.11 4.49 3.50 30.32 0.11 4.59 16 8 H 0.07 2.80 7.83 -2.39 -0.02 2.78 16 9 C -0.13 -4.74 6.53 31.86 0.21 -4.53 16 10 C -0.14 -5.70 6.53 32.05 0.21 -5.49 16 11 C 0.20 10.60 3.23 30.51 0.10 10.69 16 12 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 13 C -0.56 -31.54 8.79 25.60 0.23 -31.32 16 14 H 0.06 3.51 7.76 -2.91 -0.02 3.49 16 15 C 0.03 1.45 5.43 84.65 0.46 1.91 16 16 N -0.90 -53.67 13.05 21.45 0.28 -53.39 16 17 Si 0.96 43.94 29.54 68.60 2.03 45.96 16 18 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 O -0.38 -20.15 9.21 -148.98 -1.37 -21.52 16 22 C 0.13 4.38 7.24 22.36 0.16 4.54 16 23 F -0.14 -4.34 16.58 44.97 0.75 -3.60 16 24 C -0.19 -5.44 9.97 22.41 0.22 -5.22 16 25 H 0.07 0.92 7.67 -2.38 -0.02 0.90 16 26 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 0.93 7.65 -2.39 -0.02 0.91 16 28 H 0.15 3.79 6.30 -2.91 -0.02 3.77 16 29 H 0.12 5.29 7.32 -2.91 -0.02 5.27 16 30 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 31 H 0.07 2.54 7.84 -2.38 -0.02 2.52 16 32 H 0.07 2.74 8.04 -2.38 -0.02 2.72 16 33 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 34 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 35 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -66.25 300.58 5.07 -61.18 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 1.09 Total: 12.92 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 3.27 Total: -33.07 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.28 Total: -53.39 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -2.34 Total: -30.01 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.75 Total: -3.60 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -66.25 5.07 -61.18 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404976456.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.920 kcal (2) G-P(sol) polarization free energy of solvation -66.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds