Wall clock time and date at job start Mon Mar 30 2020 06:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.38240 * 119.99975 * 239.72818 * 4 2 1 6 6 C 1.38237 * 119.99577 * 179.76481 * 5 4 2 7 7 C 1.38229 * 120.00527 * 0.51203 * 6 5 4 8 8 C 1.38241 * 119.99506 * 359.74163 * 7 6 5 9 9 C 1.38227 * 120.00377 * 359.97438 * 8 7 6 10 10 S 1.81399 * 109.47147 * 120.00104 * 2 1 3 11 11 O 1.42102 * 109.47216 * 56.38936 * 10 2 1 12 12 C 1.81398 * 103.00088 * 299.99901 * 10 2 1 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 10 2 14 14 C 1.50701 * 109.46891 * 179.97438 * 13 12 10 15 15 H 1.07992 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99441 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00417 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99520 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47558 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47055 * 120.00104 * 18 16 14 21 21 H 1.48500 * 109.47119 * 240.00022 * 18 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.07995 * 119.99876 * 359.97438 * 5 4 2 29 29 H 1.08004 * 119.99652 * 180.22631 * 6 5 4 30 30 H 1.08002 * 120.00714 * 179.72603 * 7 6 5 31 31 H 1.08002 * 119.99424 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.00521 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.46881 * 299.99990 * 12 10 2 34 34 H 1.09000 * 109.46946 * 60.00038 * 12 10 2 35 35 H 1.08998 * 109.46864 * 299.99844 * 13 12 10 36 36 H 1.09000 * 109.46988 * 60.00250 * 13 12 10 37 37 H 0.97003 * 120.00012 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8317 -1.8311 -1.1036 6 6 3.2884 -2.4855 -2.2324 7 6 2.9546 -2.0132 -3.4878 8 6 2.1595 -0.8895 -3.6146 9 6 1.6979 -0.2384 -2.4860 10 16 2.1346 -0.8552 1.4811 11 8 1.5934 -2.1683 1.5241 12 6 1.4375 0.1308 2.8348 13 6 1.8625 -0.4713 4.1757 14 6 1.2838 0.3482 5.3002 15 1 0.6736 1.2117 5.0806 16 6 1.5325 -0.0053 6.6095 17 7 2.2751 -1.0572 6.8770 18 14 0.8147 1.0101 8.0034 19 1 0.0216 2.1326 7.4409 20 1 -0.0649 0.1529 8.8382 21 1 1.9160 1.5517 8.8395 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.0965 -2.1972 -0.1228 29 1 3.9099 -3.3632 -2.1333 30 1 3.3151 -2.5220 -4.3697 31 1 1.8990 -0.5203 -4.5956 32 1 1.0771 0.6397 -2.5850 33 1 1.8032 1.1552 2.7638 34 1 0.3498 0.1275 2.7638 35 1 1.4964 -1.4956 4.2463 36 1 2.9501 -0.4684 4.2468 37 1 2.4504 -1.3056 7.7981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447139237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:42 Heat of formation + Delta-G solvation = -27.854400 kcal Electronic energy + Delta-G solvation = -17875.688796 eV Core-core repulsion = 15130.122946 eV Total energy + Delta-G solvation = -2745.565850 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50385 -35.42371 -35.17865 -33.68725 -31.14336 -30.82663 -29.70080 -27.24591 -25.27743 -23.50603 -22.54439 -21.37173 -20.18090 -17.25001 -16.80369 -16.45773 -15.57522 -15.12552 -14.63779 -14.35013 -14.16120 -14.08602 -13.74723 -13.69350 -13.15660 -12.59937 -12.36303 -12.21930 -12.07519 -12.04536 -11.57250 -11.31518 -11.18737 -11.11909 -10.97087 -10.71451 -10.67569 -10.09706 -9.95783 -9.42896 -8.95764 -8.91689 -8.71911 -8.41711 -7.66590 -6.04494 -4.08536 1.33415 1.37774 1.97230 3.14753 3.28504 3.36148 3.39725 3.75400 4.23612 4.42874 4.58857 4.86546 4.95095 5.07355 5.10447 5.17183 5.30675 5.43115 5.53308 5.62333 5.70972 5.76163 5.81019 5.97297 6.00073 6.03113 6.09384 6.16856 6.26220 6.44399 6.49472 6.55798 6.83305 6.96767 7.49827 7.61418 7.90836 8.32162 8.96381 9.55659 11.06208 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043793 B = 0.004302 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.222702 B = 6506.845524 C = 6885.386002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.355 4.355 3 C -0.118 4.118 4 C -0.038 4.038 5 C -0.126 4.126 6 C -0.110 4.110 7 C -0.129 4.129 8 C -0.121 4.121 9 C -0.111 4.111 10 S 1.226 4.774 11 O -0.845 6.845 12 C -0.416 4.416 13 C 0.038 3.962 14 C -0.517 4.517 15 H 0.058 0.942 16 C 0.057 3.943 17 N -0.892 5.892 18 Si 0.894 3.106 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.282 1.282 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.127 0.873 29 H 0.124 0.876 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.120 0.880 33 H 0.106 0.894 34 H 0.075 0.925 35 H 0.023 0.977 36 H 0.028 0.972 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.466 3.697 -19.388 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.450 4.450 3 C -0.176 4.176 4 C -0.038 4.038 5 C -0.144 4.144 6 C -0.128 4.128 7 C -0.147 4.147 8 C -0.139 4.139 9 C -0.130 4.130 10 S 1.427 4.573 11 O -0.841 6.841 12 C -0.556 4.556 13 C 0.000 4.000 14 C -0.557 4.557 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.208 1.208 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.142 0.858 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.138 0.862 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.085 2.765 -19.242 19.864 hybrid contribution -2.758 0.550 0.763 2.914 sum 1.327 3.315 -18.479 18.821 Atomic orbital electron populations 1.21887 0.92344 1.02578 1.02646 1.26329 1.02056 1.05241 1.11374 1.21578 1.01727 0.91540 1.02766 1.19197 0.96554 0.94834 0.93255 1.21271 0.98203 0.95428 0.99489 1.21094 0.99843 0.99639 0.92252 1.21120 0.99205 0.97063 0.97329 1.21098 0.98373 0.96175 0.98252 1.20947 1.00185 1.00092 0.91789 1.70348 1.17262 0.84251 0.85463 1.93098 1.79991 1.27165 1.83820 1.27664 1.07603 1.09589 1.10711 1.18795 0.97179 0.96427 0.87620 1.21181 1.31738 1.12252 0.90522 0.92424 1.25042 0.95237 0.95226 0.98955 1.69968 1.38111 1.25570 1.19489 0.86501 0.78961 0.80184 0.82155 1.19743 1.20994 1.20815 0.92305 0.91663 0.92238 0.91245 0.91076 0.92235 0.85523 0.85823 0.86249 0.86293 0.86199 0.87565 0.90624 0.95905 0.95405 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.10 37.16 0.30 -1.66 16 2 C -0.35 -4.80 0.76 -91.78 -0.07 -4.87 16 3 C -0.12 -1.25 8.13 37.15 0.30 -0.95 16 4 C -0.04 -0.50 4.77 -104.62 -0.50 -1.00 16 5 C -0.13 -1.74 8.91 -39.58 -0.35 -2.09 16 6 C -0.11 -1.30 10.05 -39.59 -0.40 -1.70 16 7 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 8 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 9 C -0.11 -1.29 8.71 -39.58 -0.34 -1.64 16 10 S 1.23 20.46 10.25 -107.50 -1.10 19.36 16 11 O -0.85 -18.90 16.89 -35.23 -0.59 -19.49 16 12 C -0.42 -8.17 4.97 37.16 0.18 -7.99 16 13 C 0.04 0.98 4.98 -27.88 -0.14 0.85 16 14 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 15 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 18 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H 0.06 0.71 7.39 -51.93 -0.38 0.33 16 23 H 0.06 0.93 6.68 -51.93 -0.35 0.59 16 24 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.07 0.72 6.68 -51.93 -0.35 0.38 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 28 H 0.13 1.85 5.30 -46.33 -0.25 1.61 16 29 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 30 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.12 1.20 7.10 -52.49 -0.37 0.83 16 33 H 0.11 1.79 7.00 -51.92 -0.36 1.42 16 34 H 0.07 1.54 7.00 -51.92 -0.36 1.18 16 35 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -34.80 312.65 -8.80 -43.60 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.31 Total: -0.86 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: -2.22 Total: -37.77 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.74 Total: -26.03 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: -0.59 Total: -19.49 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 20.46 SS G_CDS: -1.10 Total: 19.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -34.80 -8.80 -43.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447139237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.746 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds