Wall clock time and date at job start Mon Mar 30 2020 06:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00010 * 2 1 3 5 5 C 1.38240 * 119.99975 * 239.72818 * 4 2 1 6 6 C 1.38237 * 119.99577 * 179.76481 * 5 4 2 7 7 C 1.38229 * 120.00527 * 0.51203 * 6 5 4 8 8 C 1.38241 * 119.99506 * 359.74163 * 7 6 5 9 9 C 1.38227 * 120.00377 * 359.97438 * 8 7 6 10 10 S 1.81399 * 109.47147 * 120.00104 * 2 1 3 11 11 O 1.42102 * 109.47216 * 56.38936 * 10 2 1 12 12 C 1.81398 * 103.00088 * 299.99901 * 10 2 1 13 13 C 1.53006 * 109.47199 * 179.97438 * 12 10 2 14 14 C 1.50701 * 109.46891 * 179.97438 * 13 12 10 15 15 H 1.07992 * 120.00144 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99441 * 179.97438 * 14 13 12 17 17 N 1.31510 * 120.00417 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99520 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47558 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47055 * 120.00104 * 18 16 14 21 21 H 1.48500 * 109.47119 * 240.00022 * 18 16 14 22 22 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 23 23 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 24 24 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 26 26 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 28 28 H 1.07995 * 119.99876 * 359.97438 * 5 4 2 29 29 H 1.08004 * 119.99652 * 180.22631 * 6 5 4 30 30 H 1.08002 * 120.00714 * 179.72603 * 7 6 5 31 31 H 1.08002 * 119.99424 * 179.97438 * 8 7 6 32 32 H 1.07996 * 120.00521 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.46881 * 299.99990 * 12 10 2 34 34 H 1.09000 * 109.46946 * 60.00038 * 12 10 2 35 35 H 1.08998 * 109.46864 * 299.99844 * 13 12 10 36 36 H 1.09000 * 109.46988 * 60.00250 * 13 12 10 37 37 H 0.97003 * 120.00012 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.8317 -1.8311 -1.1036 6 6 3.2884 -2.4855 -2.2324 7 6 2.9546 -2.0132 -3.4878 8 6 2.1595 -0.8895 -3.6146 9 6 1.6979 -0.2384 -2.4860 10 16 2.1346 -0.8552 1.4811 11 8 1.5934 -2.1683 1.5241 12 6 1.4375 0.1308 2.8348 13 6 1.8625 -0.4713 4.1757 14 6 1.2838 0.3482 5.3002 15 1 0.6736 1.2117 5.0806 16 6 1.5325 -0.0053 6.6095 17 7 2.2751 -1.0572 6.8770 18 14 0.8147 1.0101 8.0034 19 1 0.0216 2.1326 7.4409 20 1 -0.0649 0.1529 8.8382 21 1 1.9160 1.5517 8.8395 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6768 1.9562 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 3.0965 -2.1972 -0.1228 29 1 3.9099 -3.3632 -2.1333 30 1 3.3151 -2.5220 -4.3697 31 1 1.8990 -0.5203 -4.5956 32 1 1.0771 0.6397 -2.5850 33 1 1.8032 1.1552 2.7638 34 1 0.3498 0.1275 2.7638 35 1 1.4964 -1.4956 4.2463 36 1 2.9501 -0.4684 4.2468 37 1 2.4504 -1.3056 7.7981 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447139237.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:41 Heat of formation + Delta-G solvation = -50.027643 kcal Electronic energy + Delta-G solvation = -17876.650300 eV Core-core repulsion = 15130.122946 eV Total energy + Delta-G solvation = -2746.527354 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.42364 -36.79559 -36.44669 -35.73682 -32.96903 -31.83135 -30.71192 -28.24221 -27.30475 -24.46643 -23.51999 -23.22926 -21.25041 -18.80141 -18.31346 -17.82763 -16.87305 -16.49391 -16.06134 -15.83803 -15.56721 -15.20946 -14.91354 -14.76573 -14.43971 -14.05795 -13.76926 -13.57982 -13.44139 -13.17364 -12.88350 -12.81628 -12.71891 -12.52640 -12.22817 -12.10191 -11.95218 -11.77784 -11.66147 -11.45666 -10.61524 -10.56930 -9.83596 -9.62835 -9.12194 -8.22072 -6.35489 0.42784 0.48689 0.59406 1.39380 1.40347 1.53426 1.76792 2.39648 2.82971 2.88718 3.10242 3.53117 3.93103 3.99326 4.10485 4.19178 4.26193 4.31345 4.44697 4.52473 4.56513 4.65985 4.73875 4.86682 4.93697 4.96726 5.09923 5.12330 5.16760 5.37277 5.43277 5.49665 5.58284 5.62155 5.62479 5.75855 6.10792 6.16292 6.79346 7.34087 8.89392 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.043793 B = 0.004302 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.222702 B = 6506.845524 C = 6885.386002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.334 4.334 3 C -0.122 4.122 4 C -0.057 4.057 5 C -0.157 4.157 6 C -0.121 4.121 7 C -0.127 4.127 8 C -0.118 4.118 9 C -0.114 4.114 10 S 1.261 4.739 11 O -0.911 6.911 12 C -0.415 4.415 13 C 0.037 3.963 14 C -0.539 4.539 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.969 3.031 19 H -0.259 1.259 20 H -0.284 1.284 21 H -0.271 1.271 22 H 0.088 0.912 23 H 0.062 0.938 24 H 0.027 0.973 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.106 0.894 29 H 0.136 0.864 30 H 0.149 0.851 31 H 0.151 0.849 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.063 0.937 35 H -0.027 1.027 36 H 0.022 0.978 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.293 6.257 -21.689 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.434 4.434 3 C -0.180 4.180 4 C -0.058 4.058 5 C -0.176 4.176 6 C -0.139 4.139 7 C -0.145 4.145 8 C -0.135 4.135 9 C -0.132 4.132 10 S 1.465 4.535 11 O -0.906 6.906 12 C -0.553 4.553 13 C -0.001 4.001 14 C -0.578 4.578 15 H 0.084 0.916 16 C -0.200 4.200 17 N -0.574 5.574 18 Si 0.793 3.207 19 H -0.183 1.183 20 H -0.210 1.210 21 H -0.196 1.196 22 H 0.107 0.893 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.092 0.908 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.124 0.876 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.082 0.918 35 H -0.008 1.008 36 H 0.040 0.960 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.918 5.321 -21.504 22.496 hybrid contribution -2.690 -0.278 1.272 2.988 sum 1.228 5.043 -20.232 20.887 Atomic orbital electron populations 1.21926 0.92794 1.00973 1.03994 1.26065 1.01693 1.06721 1.08886 1.21719 1.03156 0.88947 1.04180 1.19232 0.97497 0.95172 0.93860 1.21308 1.00110 0.96743 0.99430 1.21341 1.00044 1.00060 0.92436 1.21505 0.98418 0.97025 0.97534 1.21520 0.97151 0.95539 0.99321 1.21186 1.00181 1.00778 0.91091 1.69557 1.16213 0.82230 0.85536 1.92994 1.81166 1.31077 1.85393 1.27569 1.06987 1.11637 1.09113 1.18642 0.96568 0.93975 0.90905 1.21657 1.31855 1.12692 0.91612 0.91568 1.26055 0.95525 0.96405 1.02062 1.70111 1.39544 1.27413 1.20310 0.85338 0.78373 0.78608 0.78359 1.18298 1.20988 1.19617 0.89315 0.91950 0.95333 0.90841 0.89143 0.89798 0.87629 0.84579 0.83338 0.83088 0.84119 0.84207 0.91776 1.00816 0.95993 0.92587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 8.10 71.98 0.58 -3.26 16 2 C -0.33 -8.67 0.76 -11.54 -0.01 -8.68 16 3 C -0.12 -2.20 8.13 71.98 0.59 -1.62 16 4 C -0.06 -1.44 4.77 -19.86 -0.09 -1.54 16 5 C -0.16 -4.39 8.91 22.27 0.20 -4.19 16 6 C -0.12 -2.74 10.05 22.27 0.22 -2.51 16 7 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 8 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 9 C -0.11 -2.27 8.71 22.27 0.19 -2.07 16 10 S 1.26 43.80 10.25 -56.49 -0.58 43.22 16 11 O -0.91 -43.66 16.89 -148.98 -2.52 -46.17 16 12 C -0.41 -16.68 4.97 71.98 0.36 -16.32 16 13 C 0.04 2.01 4.98 29.85 0.15 2.16 16 14 C -0.54 -30.93 9.11 25.60 0.23 -30.69 16 15 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 16 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 17 N -0.93 -57.76 13.29 21.45 0.28 -57.47 16 18 Si 0.97 44.35 29.54 68.60 2.03 46.38 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H 0.09 1.90 7.39 -2.39 -0.02 1.88 16 23 H 0.06 1.74 6.68 -2.39 -0.02 1.72 16 24 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 25 H 0.07 1.29 6.68 -2.39 -0.02 1.28 16 26 H 0.09 1.31 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.19 7.39 -2.39 -0.02 1.17 16 28 H 0.11 3.31 5.30 -6.83 -0.04 3.27 16 29 H 0.14 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 31 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 32 H 0.14 2.17 7.10 -2.91 -0.02 2.15 16 33 H 0.14 4.56 7.00 -2.39 -0.02 4.54 16 34 H 0.06 2.69 7.00 -2.39 -0.02 2.67 16 35 H -0.03 -1.67 8.14 -2.39 -0.02 -1.69 16 36 H 0.02 1.17 8.14 -2.39 -0.02 1.16 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -79.33 312.65 3.57 -75.76 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: 1.02 Total: 10.50 kcal Atomic # 6 Polarization: -75.56 SS G_CDS: 3.33 Total: -72.23 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.28 Total: -57.47 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -2.52 Total: -46.17 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 43.80 SS G_CDS: -0.58 Total: 43.22 kcal Total: -79.33 3.57 -75.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447139237.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.736 kcal (2) G-P(sol) polarization free energy of solvation -79.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds