Wall clock time and date at job start Mon Mar 30 2020 06:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47660 * 2 1 4 4 S 1.81406 * 109.46959 * 119.99921 * 2 1 3 5 5 C 1.81399 * 102.99894 * 299.99868 * 4 2 1 6 6 C 1.53000 * 109.46958 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99961 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99717 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47438 * 0.02562 * 13 11 9 15 15 H 1.48491 * 109.47045 * 120.00577 * 13 11 9 16 16 H 1.48501 * 109.46950 * 240.00369 * 13 11 9 17 17 C 1.50702 * 109.47297 * 239.99597 * 2 1 3 18 18 C 1.38238 * 119.99575 * 359.73153 * 17 2 1 19 19 C 1.38234 * 119.99397 * 179.76319 * 18 17 2 20 20 C 1.38229 * 120.00711 * 0.50954 * 19 18 17 21 21 C 1.38240 * 119.99658 * 359.74022 * 20 19 18 22 22 C 1.38236 * 120.00054 * 0.02562 * 21 20 19 23 23 H 1.09005 * 109.47087 * 300.00142 * 1 2 3 24 24 H 1.09006 * 109.47051 * 60.00035 * 1 2 3 25 25 H 1.08995 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47854 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46860 * 300.00083 * 3 2 1 28 28 H 1.09004 * 109.47443 * 59.99524 * 3 2 1 29 29 H 1.08992 * 109.47090 * 60.00099 * 5 4 2 30 30 H 1.09004 * 109.46981 * 299.99644 * 5 4 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 32 32 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 33 33 H 1.07997 * 120.00411 * 359.97438 * 18 17 2 34 34 H 1.08003 * 119.99757 * 180.22606 * 19 18 17 35 35 H 1.07992 * 120.00565 * 179.72369 * 20 19 18 36 36 H 1.07998 * 120.00317 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00234 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.4374 0.1309 2.8348 6 6 1.8634 -0.4704 4.1756 7 1 2.9511 -0.4668 4.2464 8 8 1.3843 -1.8135 4.2689 9 6 1.2847 0.3491 5.3002 10 1 0.6745 1.2127 5.0804 11 6 1.5343 -0.0037 6.6095 12 7 2.2777 -1.0550 6.8770 13 14 0.8164 1.0118 8.0034 14 1 0.0224 2.1335 7.4408 15 1 -0.0621 0.1544 8.8389 16 1 1.9178 1.5545 8.8386 17 6 2.0323 -0.7105 -1.2304 18 6 1.1340 -1.2408 -2.1375 19 6 1.5948 -1.8882 -3.2686 20 6 2.9538 -2.0146 -3.4874 21 6 3.8522 -1.4889 -2.5776 22 6 3.3914 -0.8372 -1.4490 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.3498 0.1276 2.7638 30 1 1.8032 1.1553 2.7638 31 1 0.4222 -1.8927 4.2135 32 1 2.4536 -1.3030 7.7981 33 1 0.0722 -1.1462 -1.9642 34 1 0.8930 -2.2993 -3.9791 35 1 3.3138 -2.5243 -4.3687 36 1 4.9140 -1.5880 -2.7483 37 1 4.0932 -0.4268 -0.7380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450932160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:37 Heat of formation + Delta-G solvation = -38.620287 kcal Electronic energy + Delta-G solvation = -17703.447033 eV Core-core repulsion = 14957.414339 eV Total energy + Delta-G solvation = -2746.032694 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50761 -35.85022 -35.41668 -32.16397 -31.03771 -30.13916 -29.22077 -27.37377 -25.29928 -23.33865 -22.27845 -21.14215 -20.07694 -17.27046 -17.03485 -15.96414 -14.96841 -14.70119 -14.65513 -14.39545 -14.21069 -14.04033 -13.87654 -13.46035 -13.08594 -12.69046 -12.58930 -12.19130 -11.79130 -11.67836 -11.45828 -11.32335 -11.12795 -10.93679 -10.89998 -10.74682 -10.52824 -10.03692 -9.40878 -9.04712 -8.88739 -8.63392 -8.60658 -8.20595 -7.03229 -6.05904 -4.26015 1.24293 1.42919 2.33523 3.23697 3.24001 3.32643 3.35478 3.86363 4.35290 4.58228 4.76593 4.98734 5.06800 5.11308 5.16352 5.21159 5.48497 5.55175 5.63579 5.72751 5.74833 5.82184 5.91950 5.99714 6.03922 6.06231 6.11770 6.23529 6.34915 6.49156 6.52234 6.65996 6.70624 7.00788 7.62823 7.76978 8.06731 8.75914 9.34817 9.52068 10.97979 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.004169 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.025939 B = 6714.393052 C = 6893.133565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 C -0.138 4.138 4 S -0.236 6.236 5 C -0.102 4.102 6 C 0.246 3.754 7 H 0.063 0.937 8 O -0.555 6.555 9 C -0.571 4.571 10 H 0.057 0.943 11 C 0.081 3.919 12 N -0.855 5.855 13 Si 0.892 3.108 14 H -0.272 1.272 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.050 4.050 18 C -0.113 4.113 19 C -0.123 4.123 20 C -0.126 4.126 21 C -0.121 4.121 22 C -0.101 4.101 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.345 0.655 32 H 0.261 0.739 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.528 1.853 -18.436 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.197 4.197 4 S -0.004 6.004 5 C -0.250 4.250 6 C 0.187 3.813 7 H 0.081 0.919 8 O -0.357 6.357 9 C -0.610 4.610 10 H 0.076 0.924 11 C -0.126 4.126 12 N -0.491 5.491 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.051 4.051 18 C -0.133 4.133 19 C -0.141 4.141 20 C -0.144 4.144 21 C -0.139 4.139 22 C -0.120 4.120 23 H 0.081 0.919 24 H 0.079 0.921 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.188 0.812 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.139 0.700 -18.150 18.164 hybrid contribution -1.709 1.823 0.750 2.609 sum -1.848 2.524 -17.400 17.679 Atomic orbital electron populations 1.22178 0.92941 1.02953 1.02108 1.21556 0.98139 0.97306 0.94579 1.22114 1.02004 0.93484 1.02096 1.87259 1.70469 1.43945 0.98755 1.24647 1.02027 1.00886 0.97446 1.19141 0.95969 0.80552 0.85619 0.91928 1.86611 1.23831 1.29150 1.96129 1.21582 1.34727 1.13657 0.91072 0.92448 1.25038 0.94220 0.94553 0.98815 1.70095 1.35555 1.24110 1.19302 0.86565 0.79061 0.80272 0.82182 1.19691 1.20780 1.20778 1.19343 0.93592 0.98081 0.94077 1.21159 0.99842 0.98072 0.94188 1.21088 0.95652 0.99752 0.97632 1.21120 0.93490 1.00335 0.99470 1.21123 0.99603 0.98565 0.94601 1.21106 0.95155 0.98588 0.97153 0.91893 0.92150 0.91205 0.91426 0.92311 0.91834 0.91310 0.90813 0.81163 0.92865 0.85612 0.86261 0.86400 0.86137 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 6.98 37.16 0.26 -1.59 16 2 C -0.01 -0.09 0.77 -91.77 -0.07 -0.16 16 3 C -0.14 -1.82 8.13 37.16 0.30 -1.51 16 4 S -0.24 -4.40 19.91 -107.50 -2.14 -6.54 16 5 C -0.10 -2.07 4.69 37.16 0.17 -1.90 16 6 C 0.25 6.25 2.87 -27.88 -0.08 6.17 16 7 H 0.06 1.78 8.14 -51.93 -0.42 1.36 16 8 O -0.56 -14.51 12.33 -35.23 -0.43 -14.94 16 9 C -0.57 -15.44 8.76 -34.44 -0.30 -15.74 16 10 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 11 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 12 N -0.86 -25.24 12.84 55.43 0.71 -24.52 16 13 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 14 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 C -0.05 -0.68 4.76 -104.62 -0.50 -1.18 16 18 C -0.11 -1.38 8.98 -39.58 -0.36 -1.73 16 19 C -0.12 -1.33 10.05 -39.59 -0.40 -1.73 16 20 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 21 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 22 C -0.10 -1.34 8.78 -39.58 -0.35 -1.69 16 23 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 24 H 0.06 0.65 7.53 -51.93 -0.39 0.26 16 25 H 0.07 0.91 7.50 -51.93 -0.39 0.52 16 26 H 0.07 0.88 7.39 -51.93 -0.38 0.50 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.87 6.68 -51.93 -0.35 0.52 16 29 H 0.07 1.34 6.99 -51.93 -0.36 0.97 16 30 H 0.07 1.45 7.00 -51.92 -0.36 1.08 16 31 H 0.34 8.03 9.04 45.56 0.41 8.44 16 32 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 33 H 0.13 1.35 5.89 -52.49 -0.31 1.04 16 34 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 36 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.70 7.58 -52.49 -0.40 1.30 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -30.51 314.97 -8.88 -39.39 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -4.53 Total: 8.45 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -2.21 Total: -22.45 kcal Atomic # 7 Polarization: -25.24 SS G_CDS: 0.71 Total: -24.52 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.43 Total: -14.94 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: -4.40 SS G_CDS: -2.14 Total: -6.54 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.51 -8.88 -39.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450932160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.770 kcal (2) G-P(sol) polarization free energy of solvation -30.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds