Wall clock time and date at job start Mon Mar 30 2020 06:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47660 * 2 1 4 4 S 1.81406 * 109.46959 * 119.99921 * 2 1 3 5 5 C 1.81399 * 102.99894 * 299.99868 * 4 2 1 6 6 C 1.53000 * 109.46958 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47398 * 59.99961 * 6 5 4 8 8 O 1.42903 * 109.46726 * 299.99717 * 6 5 4 9 9 C 1.50699 * 109.47083 * 179.97438 * 6 5 4 10 10 H 1.08000 * 119.99792 * 359.97438 * 9 6 5 11 11 C 1.37878 * 119.99902 * 179.97438 * 9 6 5 12 12 N 1.31515 * 120.00126 * 0.02562 * 11 9 6 13 13 Si 1.86803 * 119.99745 * 180.02562 * 11 9 6 14 14 H 1.48501 * 109.47438 * 0.02562 * 13 11 9 15 15 H 1.48491 * 109.47045 * 120.00577 * 13 11 9 16 16 H 1.48501 * 109.46950 * 240.00369 * 13 11 9 17 17 C 1.50702 * 109.47297 * 239.99597 * 2 1 3 18 18 C 1.38238 * 119.99575 * 359.73153 * 17 2 1 19 19 C 1.38234 * 119.99397 * 179.76319 * 18 17 2 20 20 C 1.38229 * 120.00711 * 0.50954 * 19 18 17 21 21 C 1.38240 * 119.99658 * 359.74022 * 20 19 18 22 22 C 1.38236 * 120.00054 * 0.02562 * 21 20 19 23 23 H 1.09005 * 109.47087 * 300.00142 * 1 2 3 24 24 H 1.09006 * 109.47051 * 60.00035 * 1 2 3 25 25 H 1.08995 * 109.47219 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47854 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.46860 * 300.00083 * 3 2 1 28 28 H 1.09004 * 109.47443 * 59.99524 * 3 2 1 29 29 H 1.08992 * 109.47090 * 60.00099 * 5 4 2 30 30 H 1.09004 * 109.46981 * 299.99644 * 5 4 2 31 31 H 0.96700 * 114.00234 * 300.00043 * 8 6 5 32 32 H 0.96999 * 120.00073 * 179.97438 * 12 11 9 33 33 H 1.07997 * 120.00411 * 359.97438 * 18 17 2 34 34 H 1.08003 * 119.99757 * 180.22606 * 19 18 17 35 35 H 1.07992 * 120.00565 * 179.72369 * 20 19 18 36 36 H 1.07998 * 120.00317 * 179.97438 * 21 20 19 37 37 H 1.07998 * 120.00234 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 16 2.1346 -0.8551 1.4812 5 6 1.4374 0.1309 2.8348 6 6 1.8634 -0.4704 4.1756 7 1 2.9511 -0.4668 4.2464 8 8 1.3843 -1.8135 4.2689 9 6 1.2847 0.3491 5.3002 10 1 0.6745 1.2127 5.0804 11 6 1.5343 -0.0037 6.6095 12 7 2.2777 -1.0550 6.8770 13 14 0.8164 1.0118 8.0034 14 1 0.0224 2.1335 7.4408 15 1 -0.0621 0.1544 8.8389 16 1 1.9178 1.5545 8.8386 17 6 2.0323 -0.7105 -1.2304 18 6 1.1340 -1.2408 -2.1375 19 6 1.5948 -1.8882 -3.2686 20 6 2.9538 -2.0146 -3.4874 21 6 3.8522 -1.4889 -2.5776 22 6 3.3914 -0.8372 -1.4490 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.3498 0.1276 2.7638 30 1 1.8032 1.1553 2.7638 31 1 0.4222 -1.8927 4.2135 32 1 2.4536 -1.3030 7.7981 33 1 0.0722 -1.1462 -1.9642 34 1 0.8930 -2.2993 -3.9791 35 1 3.3138 -2.5243 -4.3687 36 1 4.9140 -1.5880 -2.7483 37 1 4.0932 -0.4268 -0.7380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450932160.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:36 Heat of formation + Delta-G solvation = -56.603217 kcal Electronic energy + Delta-G solvation = -17704.226831 eV Core-core repulsion = 14957.414339 eV Total energy + Delta-G solvation = -2746.812492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.43351 -37.86664 -36.43878 -34.29325 -31.93448 -31.70526 -30.49974 -28.39509 -27.31716 -24.31582 -23.24328 -23.00275 -21.14425 -19.24284 -18.15589 -17.13999 -16.71359 -16.22770 -16.03982 -15.85648 -15.68453 -15.47975 -15.03924 -14.53191 -14.35722 -14.05274 -13.66341 -13.39858 -13.25817 -13.19895 -12.92450 -12.78594 -12.57261 -12.45732 -12.40302 -12.02243 -11.71742 -11.60639 -11.25006 -10.76441 -10.54225 -10.27932 -9.78260 -9.56090 -8.53316 -8.16769 -6.44783 0.22632 0.53341 1.06344 1.40081 1.41308 1.53595 1.80194 2.38376 2.95270 3.09391 3.55038 3.76248 4.03258 4.12940 4.19382 4.20432 4.24896 4.31979 4.39381 4.58727 4.61236 4.69355 4.76356 4.78855 4.80489 4.89824 5.08968 5.16346 5.18664 5.20275 5.53838 5.61100 5.64679 5.65115 5.71690 5.97805 6.13635 6.65731 7.28661 7.48951 8.88002 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.041967 B = 0.004169 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.025939 B = 6714.393052 C = 6893.133565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.011 3.989 3 C -0.136 4.136 4 S -0.281 6.281 5 C -0.082 4.082 6 C 0.247 3.753 7 H 0.020 0.980 8 O -0.572 6.572 9 C -0.583 4.583 10 H 0.065 0.935 11 C 0.026 3.974 12 N -0.900 5.900 13 Si 0.966 3.034 14 H -0.260 1.260 15 H -0.278 1.278 16 H -0.279 1.279 17 C -0.071 4.071 18 C -0.120 4.120 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.129 4.129 22 C -0.120 4.120 23 H 0.054 0.946 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.356 0.644 32 H 0.263 0.737 33 H 0.140 0.860 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.900 2.541 -20.394 20.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.098 4.098 3 C -0.195 4.195 4 S -0.050 6.050 5 C -0.231 4.231 6 C 0.188 3.812 7 H 0.038 0.962 8 O -0.375 6.375 9 C -0.622 4.622 10 H 0.083 0.917 11 C -0.177 4.177 12 N -0.536 5.536 13 Si 0.790 3.210 14 H -0.184 1.184 15 H -0.204 1.204 16 H -0.205 1.205 17 C -0.072 4.072 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.142 4.142 21 C -0.146 4.146 22 C -0.140 4.140 23 H 0.073 0.927 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.100 0.900 28 H 0.074 0.926 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.200 0.800 32 H 0.072 0.928 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.164 0.836 36 H 0.156 0.844 37 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.521 1.403 -20.108 20.215 hybrid contribution -1.236 1.550 1.180 2.307 sum -2.757 2.953 -18.929 19.355 Atomic orbital electron populations 1.22164 0.91595 1.03136 1.03034 1.21608 0.99019 0.97213 0.91967 1.22092 1.01750 0.92900 1.02756 1.87334 1.71320 1.45143 1.01174 1.24164 1.02435 1.00629 0.95839 1.18904 0.93586 0.80413 0.88307 0.96180 1.86550 1.24818 1.29723 1.96441 1.21972 1.34450 1.13866 0.91949 0.91672 1.25955 0.94462 0.95596 1.01696 1.70242 1.37305 1.26187 1.19912 0.85416 0.78269 0.78757 0.78561 1.18414 1.20402 1.20485 1.19370 0.94069 0.99563 0.94228 1.21391 1.00334 0.97843 0.94368 1.21471 0.96393 0.98805 0.97505 1.21514 0.93406 0.99367 0.99889 1.21396 1.00951 0.98131 0.94162 1.21169 0.95132 0.99716 0.97951 0.92669 0.89368 0.91430 0.91986 0.90020 0.92564 0.90305 0.90450 0.79970 0.92843 0.84271 0.83442 0.83565 0.84445 0.86789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 6.98 71.98 0.50 -2.88 16 2 C 0.01 0.31 0.77 -11.54 -0.01 0.30 16 3 C -0.14 -3.46 8.13 71.98 0.59 -2.87 16 4 S -0.28 -10.71 19.91 -56.49 -1.12 -11.83 16 5 C -0.08 -3.41 4.69 71.98 0.34 -3.07 16 6 C 0.25 12.94 2.87 29.85 0.09 13.03 16 7 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 8 O -0.57 -30.83 12.33 -148.98 -1.84 -32.66 16 9 C -0.58 -31.94 8.76 25.60 0.22 -31.71 16 10 H 0.07 3.39 7.74 -2.91 -0.02 3.37 16 11 C 0.03 1.44 5.40 84.65 0.46 1.90 16 12 N -0.90 -54.40 12.84 21.45 0.28 -54.12 16 13 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 14 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 17 C -0.07 -1.85 4.76 -19.86 -0.09 -1.94 16 18 C -0.12 -2.62 8.98 22.27 0.20 -2.42 16 19 C -0.12 -2.27 10.05 22.27 0.22 -2.05 16 20 C -0.12 -2.24 10.05 22.27 0.22 -2.02 16 21 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 22 C -0.12 -3.14 8.78 22.27 0.20 -2.95 16 23 H 0.05 1.40 6.68 -2.38 -0.02 1.39 16 24 H 0.09 1.64 7.53 -2.38 -0.02 1.62 16 25 H 0.07 1.65 7.50 -2.39 -0.02 1.63 16 26 H 0.06 1.62 7.39 -2.39 -0.02 1.61 16 27 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 28 H 0.06 1.49 6.68 -2.38 -0.02 1.48 16 29 H 0.08 3.06 6.99 -2.39 -0.02 3.04 16 30 H 0.08 3.08 7.00 -2.39 -0.02 3.06 16 31 H 0.36 16.94 9.04 -74.06 -0.67 16.27 16 32 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.14 2.57 5.89 -2.91 -0.02 2.56 16 34 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 35 H 0.15 1.80 8.06 -2.91 -0.02 1.77 16 36 H 0.14 2.35 8.06 -2.91 -0.02 2.32 16 37 H 0.11 3.16 7.58 -2.91 -0.02 3.14 16 Total: -1.00 -66.78 314.97 2.89 -63.90 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.39 Total: 28.86 kcal Atomic # 6 Polarization: -42.37 SS G_CDS: 3.16 Total: -39.21 kcal Atomic # 7 Polarization: -54.40 SS G_CDS: 0.28 Total: -54.12 kcal Atomic # 8 Polarization: -30.83 SS G_CDS: -1.84 Total: -32.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -10.71 SS G_CDS: -1.12 Total: -11.83 kcal Total: -66.78 2.89 -63.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450932160.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.294 kcal (2) G-P(sol) polarization free energy of solvation -66.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds