Wall clock time and date at job start Mon Mar 30 2020 06:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46917 * 2 1 4 4 C 1.52998 * 109.46933 * 240.00328 * 2 1 3 5 5 C 1.50693 * 109.47218 * 120.00189 * 2 1 3 6 6 C 1.38233 * 120.00207 * 59.99579 * 5 2 1 7 7 C 1.38234 * 120.00037 * 179.72405 * 6 5 2 8 8 C 1.38234 * 120.00240 * 0.26327 * 7 6 5 9 9 C 1.50700 * 120.00260 * 179.97438 * 8 7 6 10 10 S 1.81402 * 109.46841 * 90.00049 * 9 8 7 11 11 O 1.42095 * 109.47130 * 70.94737 * 10 9 8 12 12 C 1.76200 * 102.99544 * 180.02562 * 10 9 8 13 13 H 1.08000 * 120.00279 * 359.97438 * 12 10 9 14 14 C 1.37887 * 119.99986 * 180.02562 * 12 10 9 15 15 N 1.31520 * 119.99568 * 359.97438 * 14 12 10 16 16 Si 1.86797 * 120.00211 * 180.02562 * 14 12 10 17 17 H 1.48493 * 109.47222 * 89.99728 * 16 14 12 18 18 H 1.48499 * 109.47100 * 209.99992 * 16 14 12 19 19 H 1.48504 * 109.46780 * 329.99660 * 16 14 12 20 20 C 1.38238 * 119.99693 * 0.02562 * 8 7 6 21 21 C 1.38234 * 120.00047 * 359.95697 * 20 8 7 22 22 H 1.08995 * 109.47325 * 299.99651 * 1 2 3 23 23 H 1.09003 * 109.47092 * 60.00098 * 1 2 3 24 24 H 1.09001 * 109.46873 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47054 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.47160 * 299.99861 * 3 2 1 27 27 H 1.09001 * 109.47089 * 60.00424 * 3 2 1 28 28 H 1.08994 * 109.47122 * 299.99328 * 4 2 1 29 29 H 1.08990 * 109.47488 * 60.00041 * 4 2 1 30 30 H 1.09001 * 109.46885 * 179.97438 * 4 2 1 31 31 H 1.08002 * 120.00157 * 0.02562 * 6 5 2 32 32 H 1.07999 * 120.00009 * 180.28389 * 7 6 5 33 33 H 1.08999 * 109.47240 * 210.00239 * 9 8 7 34 34 H 1.08999 * 109.46861 * 329.99859 * 9 8 7 35 35 H 0.96999 * 119.99533 * 180.02562 * 15 14 12 36 36 H 1.08001 * 119.99658 * 179.97438 * 20 8 7 37 37 H 1.07999 * 119.99990 * 180.02562 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 1.6984 -2.0338 1.4492 7 6 2.1639 -2.6871 2.5749 8 6 2.9589 -2.0155 3.4847 9 6 3.4660 -2.7275 4.7123 10 16 5.0652 -3.5011 4.3453 11 8 6.0580 -2.4939 4.2071 12 6 5.4918 -4.2723 5.8710 13 1 4.8288 -4.1935 6.7199 14 6 6.6726 -4.9756 5.9816 15 7 7.4802 -5.0712 4.9479 16 14 7.1246 -5.7938 7.5988 17 1 6.5871 -7.1779 7.6205 18 1 8.6026 -5.8345 7.7370 19 1 6.5433 -5.0194 8.7248 20 6 3.2880 -0.6903 3.2689 21 6 2.8228 -0.0371 2.1430 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 -1.7488 -1.2493 29 1 1.6767 -0.2074 -2.1392 30 1 3.1300 -0.7208 -1.2495 31 1 1.0778 -2.5588 0.7381 32 1 1.9068 -3.7224 2.7435 33 1 3.5870 -2.0105 5.5243 34 1 2.7507 -3.4947 5.0087 35 1 8.3108 -5.5663 5.0256 36 1 3.9088 -0.1654 3.9800 37 1 3.0802 0.9981 1.9742 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526857912.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:59 Heat of formation + Delta-G solvation = -70.247815 kcal Electronic energy + Delta-G solvation = -17634.387556 eV Core-core repulsion = 14886.983390 eV Total energy + Delta-G solvation = -2747.404166 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73734 -37.47052 -35.82557 -34.91020 -32.61121 -31.94945 -28.20648 -28.13512 -28.00196 -27.32854 -23.18243 -22.86050 -20.12939 -19.91800 -17.53561 -17.35809 -17.00466 -16.30889 -15.84699 -15.47983 -15.16726 -15.04667 -14.60607 -14.55712 -14.35238 -13.96354 -13.62411 -13.44853 -13.01170 -12.97102 -12.86141 -12.78017 -12.52871 -12.47715 -12.42554 -12.22824 -12.01508 -11.76391 -11.44626 -11.28966 -11.09873 -10.59388 -9.75266 -9.40467 -8.75994 -8.37942 -6.97586 0.43230 0.56968 1.28490 1.33714 1.44771 1.78890 2.26143 2.75712 2.98677 3.28290 3.72773 3.81785 3.92059 4.05707 4.18879 4.20908 4.24792 4.45423 4.54434 4.66730 4.74580 4.86848 4.89402 4.90549 4.97159 5.07209 5.10588 5.12288 5.24222 5.25293 5.34566 5.36641 5.42935 5.53711 5.65437 5.79721 5.82681 6.05374 6.20740 6.96054 8.41437 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047849 B = 0.004034 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.031599 B = 6939.449561 C = 6999.408627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.028 4.028 3 C -0.146 4.146 4 C -0.138 4.138 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.070 4.070 9 C -0.426 4.426 10 S 1.369 4.631 11 O -0.972 6.972 12 C -0.859 4.859 13 H 0.080 0.920 14 C 0.065 3.935 15 N -0.889 5.889 16 Si 0.972 3.028 17 H -0.240 1.240 18 H -0.275 1.275 19 H -0.273 1.273 20 C -0.148 4.148 21 C -0.125 4.125 22 H 0.047 0.953 23 H 0.073 0.927 24 H 0.065 0.935 25 H 0.048 0.952 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.052 0.948 34 H 0.136 0.864 35 H 0.287 0.713 36 H 0.087 0.913 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.585 3.695 -11.586 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.195 4.195 5 C -0.085 4.085 6 C -0.126 4.126 7 C -0.139 4.139 8 C -0.071 4.071 9 C -0.558 4.558 10 S 1.572 4.428 11 O -0.967 6.967 12 C -0.999 4.999 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.523 5.523 16 Si 0.793 3.207 17 H -0.163 1.163 18 H -0.200 1.200 19 H -0.198 1.198 20 C -0.167 4.167 21 C -0.142 4.142 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.084 0.916 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -14.909 3.675 -12.520 19.813 hybrid contribution 1.125 1.308 3.248 3.678 sum -13.783 4.983 -9.272 17.343 Atomic orbital electron populations 1.21863 0.92424 1.02688 1.02112 1.19541 0.96568 0.94881 0.91776 1.21976 1.00767 0.95116 1.02413 1.21897 1.00616 1.00839 0.96150 1.20106 0.97498 0.94697 0.96225 1.21277 0.99954 0.94093 0.97275 1.21371 0.97187 1.01307 0.94030 1.19395 0.98112 0.93734 0.95854 1.26958 1.21641 1.07813 0.99417 1.68234 0.81881 0.94778 0.97905 1.92707 1.56476 1.62145 1.85342 1.27898 1.12915 1.42797 1.16265 0.90149 1.25774 0.93732 0.93736 1.01247 1.69986 1.11877 1.37818 1.32590 0.85385 0.77791 0.79861 0.77621 1.16323 1.19974 1.19795 1.21105 1.00973 0.95495 0.99176 1.21234 0.98641 1.00579 0.93787 0.93337 0.90847 0.91647 0.93275 0.90708 0.92687 0.91554 0.90731 0.93812 0.82824 0.82712 0.92852 0.84615 0.90300 0.89477 0.85059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.02 8.29 71.98 0.60 -1.43 16 2 C -0.03 -0.52 0.85 -52.93 -0.05 -0.57 16 3 C -0.15 -2.64 7.13 71.98 0.51 -2.12 16 4 C -0.14 -2.32 8.29 71.98 0.60 -1.72 16 5 C -0.08 -2.20 4.76 -19.87 -0.09 -2.29 16 6 C -0.11 -2.68 8.71 22.27 0.19 -2.48 16 7 C -0.12 -3.50 9.70 22.27 0.22 -3.28 16 8 C -0.07 -2.62 5.14 -19.86 -0.10 -2.72 16 9 C -0.43 -17.74 6.01 71.24 0.43 -17.31 16 10 S 1.37 70.32 12.96 -56.49 -0.73 69.58 16 11 O -0.97 -63.54 17.82 -148.98 -2.65 -66.19 16 12 C -0.86 -48.28 9.39 67.74 0.64 -47.65 16 13 H 0.08 4.33 7.81 -2.91 -0.02 4.31 16 14 C 0.07 3.65 5.46 84.66 0.46 4.11 16 15 N -0.89 -51.96 13.15 21.45 0.28 -51.68 16 16 Si 0.97 42.50 29.54 68.60 2.03 44.53 16 17 H -0.24 -9.34 7.11 99.48 0.71 -8.63 16 18 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 C -0.15 -5.78 9.70 22.27 0.22 -5.56 16 21 C -0.12 -3.93 8.98 22.27 0.20 -3.73 16 22 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.90 7.39 -2.39 -0.02 0.88 16 25 H 0.05 0.99 7.53 -2.39 -0.02 0.97 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.02 7.50 -2.39 -0.02 1.00 16 28 H 0.07 1.01 7.39 -2.39 -0.02 0.99 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.15 2.68 7.10 -2.91 -0.02 2.66 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 33 H 0.05 2.43 8.09 -2.39 -0.02 2.41 16 34 H 0.14 4.68 8.09 -2.39 -0.02 4.66 16 35 H 0.29 15.32 8.31 -92.71 -0.77 14.55 16 36 H 0.09 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.13 3.67 5.90 -2.91 -0.02 3.65 16 Total: -1.00 -77.43 319.12 3.77 -73.66 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 1.04 Total: 16.86 kcal Atomic # 6 Polarization: -90.57 SS G_CDS: 3.82 Total: -86.75 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.28 Total: -51.68 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -2.65 Total: -66.19 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Atomic # 16 Polarization: 70.32 SS G_CDS: -0.73 Total: 69.58 kcal Total: -77.43 3.77 -73.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526857912.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.409 kcal (2) G-P(sol) polarization free energy of solvation -77.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds