Wall clock time and date at job start Mon Mar 30 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00201 * 180.23979 * 8 7 6 10 10 S 1.81402 * 109.47311 * 270.28249 * 9 8 7 11 11 O 1.42106 * 109.46751 * 289.05286 * 10 9 8 12 12 C 1.76194 * 103.00159 * 179.97438 * 10 9 8 13 13 H 1.08001 * 120.00391 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99959 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00468 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00109 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47267 * 59.99759 * 16 14 12 18 18 H 1.48494 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47039 * 300.00202 * 16 14 12 20 20 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 21 21 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 22 22 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 23 23 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 27 27 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 28 28 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 29 29 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 30 30 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 31 31 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 32 32 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 33 33 H 1.09002 * 109.47258 * 30.27549 * 9 8 7 34 34 H 1.08998 * 109.47359 * 150.27651 * 9 8 7 35 35 H 0.96996 * 120.00577 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.00310 * 179.72161 * 20 8 7 37 37 H 1.07997 * 120.00460 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9531 -2.0136 3.4882 9 6 3.4547 -2.7237 4.7191 10 16 2.2588 -2.5150 6.0671 11 8 2.2868 -1.1686 6.5209 12 6 3.0034 -3.3979 7.3978 13 1 3.9555 -3.8875 7.2553 14 6 2.3706 -3.4638 8.6210 15 7 1.2110 -2.8681 8.7945 16 14 3.1596 -4.4005 10.0315 17 1 4.4828 -3.8029 10.3438 18 1 2.2850 -4.3211 11.2290 19 1 3.3381 -5.8226 9.6429 20 6 3.2870 -0.6901 3.2695 21 6 2.8267 -0.0386 2.1406 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7208 -1.2495 31 1 1.0771 -2.5587 0.7384 32 1 1.8898 -3.7166 2.7539 33 1 3.5760 -3.7850 4.5023 34 1 4.4146 -2.3015 5.0164 35 1 0.7660 -2.9141 9.6551 36 1 3.9074 -0.1650 3.9808 37 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526857915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:01 Heat of formation + Delta-G solvation = -48.521539 kcal Electronic energy + Delta-G solvation = -17633.325509 eV Core-core repulsion = 14886.863465 eV Total energy + Delta-G solvation = -2746.462044 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.58711 -36.41415 -33.61653 -32.80204 -31.27104 -30.72700 -27.35008 -27.26359 -26.33975 -25.58883 -21.94933 -21.61086 -18.99278 -17.99738 -16.22210 -15.42656 -15.12296 -15.00024 -14.60768 -14.26338 -13.80068 -13.61357 -13.56539 -13.11797 -12.86588 -12.53778 -12.31869 -12.09267 -11.79622 -11.71243 -11.54258 -11.26597 -11.22057 -11.09243 -10.93040 -10.79834 -10.55222 -10.35448 -10.30838 -10.11977 -9.08762 -8.67171 -8.49128 -7.79572 -6.80189 -6.31004 -4.81348 1.75309 1.83424 3.12146 3.18119 3.20460 3.60355 4.13403 4.30714 4.67359 4.79192 4.85970 5.00919 5.21199 5.32359 5.35023 5.38442 5.52432 5.57612 5.61485 5.72633 5.75627 5.83038 5.84113 5.87495 6.00727 6.02772 6.07588 6.28012 6.29809 6.32245 6.39833 6.55965 6.70795 6.89257 6.97678 7.18410 7.45747 7.46728 8.17998 9.08209 10.47182 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047919 B = 0.004033 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.175667 B = 6941.699249 C = 7001.173218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.144 4.144 4 C -0.136 4.136 5 C -0.094 4.094 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.036 4.036 9 C -0.449 4.449 10 S 1.351 4.649 11 O -0.898 6.898 12 C -0.829 4.829 13 H 0.079 0.921 14 C 0.120 3.880 15 N -0.855 5.855 16 Si 0.906 3.094 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.120 4.120 21 C -0.116 4.116 22 H 0.057 0.943 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.281 0.719 36 H 0.115 0.885 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.880 0.634 -17.290 17.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 C -0.201 4.201 4 C -0.193 4.193 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.143 4.143 8 C -0.037 4.037 9 C -0.577 4.577 10 S 1.549 4.451 11 O -0.892 6.892 12 C -0.970 4.970 13 H 0.097 0.903 14 C -0.093 4.093 15 N -0.488 5.488 16 Si 0.731 3.269 17 H -0.197 1.197 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.139 4.139 21 C -0.134 4.134 22 H 0.076 0.924 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.135 0.865 32 H 0.144 0.856 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.852 1.200 -17.224 17.500 hybrid contribution 2.667 0.181 1.677 3.156 sum -0.185 1.381 -15.547 15.609 Atomic orbital electron populations 1.21891 0.93927 1.02074 1.01638 1.19430 0.95542 0.94799 0.92874 1.21956 1.01108 0.95313 1.01696 1.21874 1.01116 1.00203 0.96153 1.19627 0.99373 0.94347 0.96135 1.20844 1.00426 0.94215 0.97590 1.21026 0.98871 1.00228 0.94211 1.19425 0.96010 0.93694 0.94555 1.27329 1.15144 1.03931 1.11280 1.69446 0.99106 0.89308 0.87275 1.92809 1.80132 1.36303 1.79999 1.27512 1.15913 1.43327 1.10226 0.90296 1.24758 0.93641 0.92598 0.98330 1.69883 1.14283 1.38290 1.26333 0.86439 0.79787 0.80436 0.80244 1.19673 1.20454 1.19038 1.21091 1.00904 0.94673 0.97198 1.21049 0.98404 0.99604 0.94345 0.92355 0.92785 0.92354 0.92423 0.92744 0.92197 0.92434 0.92778 0.92681 0.86541 0.85572 0.87751 0.90597 0.90872 0.86648 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.29 37.16 0.31 -1.08 16 2 C -0.03 -0.29 0.85 -155.66 -0.13 -0.42 16 3 C -0.14 -1.45 7.13 37.16 0.27 -1.19 16 4 C -0.14 -1.29 8.29 37.16 0.31 -0.99 16 5 C -0.09 -1.32 4.76 -104.62 -0.50 -1.81 16 6 C -0.11 -1.57 8.71 -39.58 -0.34 -1.91 16 7 C -0.12 -1.94 9.70 -39.58 -0.38 -2.33 16 8 C -0.04 -0.67 5.14 -104.63 -0.54 -1.20 16 9 C -0.45 -9.18 6.01 36.00 0.22 -8.96 16 10 S 1.35 33.49 12.96 -107.50 -1.39 32.10 16 11 O -0.90 -27.84 17.82 -35.23 -0.63 -28.47 16 12 C -0.83 -22.83 9.39 30.60 0.29 -22.54 16 13 H 0.08 2.09 7.81 -52.49 -0.41 1.68 16 14 C 0.12 3.33 5.46 -17.82 -0.10 3.23 16 15 N -0.86 -24.50 13.15 55.43 0.73 -23.77 16 16 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 17 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 19 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 20 C -0.12 -2.23 9.70 -39.58 -0.38 -2.62 16 21 C -0.12 -1.83 8.98 -39.58 -0.36 -2.18 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.56 7.39 -51.93 -0.38 0.18 16 25 H 0.06 0.58 7.51 -51.93 -0.39 0.19 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.64 7.51 -51.93 -0.39 0.25 16 28 H 0.06 0.53 7.39 -51.93 -0.38 0.14 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.12 1.31 7.10 -52.49 -0.37 0.94 16 32 H 0.13 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.10 1.85 8.09 -51.92 -0.42 1.43 16 34 H 0.08 1.65 8.09 -51.93 -0.42 1.23 16 35 H 0.28 7.41 8.31 -40.82 -0.34 7.08 16 36 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 37 H 0.12 1.64 5.89 -52.49 -0.31 1.33 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -34.29 319.12 -8.43 -42.71 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.57 Total: 0.85 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: -1.35 Total: -44.00 kcal Atomic # 7 Polarization: -24.50 SS G_CDS: 0.73 Total: -23.77 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.63 Total: -28.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 33.49 SS G_CDS: -1.39 Total: 32.10 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -34.29 -8.43 -42.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526857915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.808 kcal (2) G-P(sol) polarization free energy of solvation -34.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds