Wall clock time and date at job start Mon Mar 30 2020 06:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46903 * 2 1 4 4 C 1.52999 * 109.46901 * 240.00006 * 2 1 3 5 5 C 1.50703 * 109.46771 * 120.00292 * 2 1 3 6 6 C 1.38234 * 120.00257 * 60.00257 * 5 2 1 7 7 C 1.38238 * 119.99675 * 180.27927 * 6 5 2 8 8 C 1.38228 * 120.00120 * 359.47825 * 7 6 5 9 9 C 1.50698 * 120.00201 * 180.23979 * 8 7 6 10 10 S 1.81402 * 109.47311 * 270.28249 * 9 8 7 11 11 O 1.42106 * 109.46751 * 289.05286 * 10 9 8 12 12 C 1.76194 * 103.00159 * 179.97438 * 10 9 8 13 13 H 1.08001 * 120.00391 * 359.97438 * 12 10 9 14 14 C 1.37877 * 119.99959 * 179.97438 * 12 10 9 15 15 N 1.31513 * 120.00468 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 120.00109 * 179.97438 * 14 12 10 17 17 H 1.48504 * 109.47267 * 59.99759 * 16 14 12 18 18 H 1.48494 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47039 * 300.00202 * 16 14 12 20 20 C 1.38234 * 120.00000 * 0.52176 * 8 7 6 21 21 C 1.38234 * 119.99503 * 240.01857 * 5 2 1 22 22 H 1.09007 * 109.47341 * 299.99607 * 1 2 3 23 23 H 1.08998 * 109.47273 * 59.99893 * 1 2 3 24 24 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.46371 * 179.97438 * 3 2 1 26 26 H 1.08998 * 109.47244 * 300.00125 * 3 2 1 27 27 H 1.08999 * 109.46950 * 60.00346 * 3 2 1 28 28 H 1.09001 * 109.46958 * 300.00030 * 4 2 1 29 29 H 1.08998 * 109.47075 * 59.99980 * 4 2 1 30 30 H 1.08997 * 109.46840 * 179.97438 * 4 2 1 31 31 H 1.08002 * 119.99744 * 359.97438 * 6 5 2 32 32 H 1.08004 * 119.99577 * 179.72816 * 7 6 5 33 33 H 1.09002 * 109.47258 * 30.27549 * 9 8 7 34 34 H 1.08998 * 109.47359 * 150.27651 * 9 8 7 35 35 H 0.96996 * 120.00577 * 180.02562 * 15 14 12 36 36 H 1.08001 * 120.00310 * 179.72161 * 20 8 7 37 37 H 1.07997 * 120.00460 * 0.02562 * 21 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.6983 -2.0340 1.4492 7 6 2.1544 -2.6839 2.5808 8 6 2.9531 -2.0136 3.4882 9 6 3.4547 -2.7237 4.7191 10 16 2.2588 -2.5150 6.0671 11 8 2.2868 -1.1686 6.5209 12 6 3.0034 -3.3979 7.3978 13 1 3.9555 -3.8875 7.2553 14 6 2.3706 -3.4638 8.6210 15 7 1.2110 -2.8681 8.7945 16 14 3.1596 -4.4005 10.0315 17 1 4.4828 -3.8029 10.3438 18 1 2.2850 -4.3211 11.2290 19 1 3.3381 -5.8226 9.6429 20 6 3.2870 -0.6901 3.2695 21 6 2.8267 -0.0386 2.1406 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6766 -1.7489 -1.2492 29 1 1.6766 -0.2074 -2.1392 30 1 3.1299 -0.7208 -1.2495 31 1 1.0771 -2.5587 0.7384 32 1 1.8898 -3.7166 2.7539 33 1 3.5760 -3.7850 4.5023 34 1 4.4146 -2.3015 5.0164 35 1 0.7660 -2.9141 9.6551 36 1 3.9074 -0.1650 3.9808 37 1 3.0870 0.9956 1.9701 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526857915.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:01 Heat of formation + Delta-G solvation = -70.214322 kcal Electronic energy + Delta-G solvation = -17634.266178 eV Core-core repulsion = 14886.863465 eV Total energy + Delta-G solvation = -2747.402714 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.73728 -37.47041 -35.82278 -34.90960 -32.61099 -31.94918 -28.20610 -28.13438 -28.00164 -27.32768 -23.18261 -22.85993 -20.12780 -19.91680 -17.53195 -17.35792 -17.00453 -16.30892 -15.84563 -15.48185 -15.16526 -15.04612 -14.60242 -14.55635 -14.35240 -13.96180 -13.62554 -13.44361 -13.03450 -12.97481 -12.85491 -12.78121 -12.52505 -12.47618 -12.40246 -12.21968 -12.02221 -11.76509 -11.44661 -11.28987 -11.10667 -10.59130 -9.75226 -9.40407 -8.75794 -8.37871 -6.97457 0.43249 0.56977 1.28871 1.34406 1.43969 1.78932 2.26214 2.76098 2.98725 3.28346 3.72766 3.81869 3.92112 4.05751 4.18851 4.20920 4.24813 4.45445 4.54479 4.66731 4.74615 4.86850 4.89436 4.90572 4.97113 5.07201 5.10550 5.12344 5.24230 5.25320 5.34570 5.36575 5.42946 5.53697 5.65439 5.79735 5.82690 6.05238 6.20758 6.96098 8.41589 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.047919 B = 0.004033 C = 0.003998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.175667 B = 6941.699249 C = 7001.173218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.028 4.028 3 C -0.146 4.146 4 C -0.134 4.134 5 C -0.085 4.085 6 C -0.108 4.108 7 C -0.120 4.120 8 C -0.070 4.070 9 C -0.426 4.426 10 S 1.369 4.631 11 O -0.972 6.972 12 C -0.859 4.859 13 H 0.081 0.919 14 C 0.066 3.934 15 N -0.889 5.889 16 Si 0.971 3.029 17 H -0.280 1.280 18 H -0.266 1.266 19 H -0.241 1.241 20 C -0.148 4.148 21 C -0.125 4.125 22 H 0.043 0.957 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.136 0.864 34 H 0.053 0.947 35 H 0.288 0.712 36 H 0.087 0.913 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.518 -0.891 -19.602 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.028 4.028 3 C -0.203 4.203 4 C -0.191 4.191 5 C -0.085 4.085 6 C -0.126 4.126 7 C -0.139 4.139 8 C -0.071 4.071 9 C -0.558 4.558 10 S 1.572 4.428 11 O -0.967 6.967 12 C -0.999 4.999 13 H 0.099 0.901 14 C -0.145 4.145 15 N -0.523 5.523 16 Si 0.792 3.208 17 H -0.205 1.205 18 H -0.191 1.191 19 H -0.164 1.164 20 C -0.168 4.168 21 C -0.142 4.142 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.092 0.908 30 H 0.067 0.933 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.154 0.846 34 H 0.072 0.928 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -3.521 -0.327 -19.507 19.825 hybrid contribution 2.901 0.694 2.165 3.686 sum -0.620 0.367 -17.342 17.357 Atomic orbital electron populations 1.21901 0.92878 1.02733 1.01992 1.19543 0.96285 0.94955 0.91985 1.21975 1.01001 0.95082 1.02211 1.21861 1.00729 1.00674 0.95822 1.20107 0.97340 0.94640 0.96443 1.21279 0.99782 0.94160 0.97378 1.21372 0.97309 1.01504 0.93721 1.19392 0.98701 0.93963 0.95029 1.26958 1.12396 1.06156 1.10319 1.68242 1.00740 0.86874 0.86946 1.92709 1.83107 1.39294 1.81574 1.27879 1.16242 1.44037 1.11788 0.90079 1.25765 0.94078 0.93431 1.01189 1.69972 1.15579 1.39367 1.27339 0.85438 0.78227 0.80070 0.77037 1.20533 1.19051 1.16439 1.21105 1.02106 0.95292 0.98248 1.21234 0.98794 1.00368 0.93848 0.93813 0.90724 0.91559 0.92698 0.90701 0.93270 0.91644 0.90847 0.93343 0.82823 0.82709 0.84614 0.92836 0.90283 0.89479 0.85063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 8.29 71.98 0.60 -1.72 16 2 C -0.03 -0.52 0.85 -52.93 -0.05 -0.57 16 3 C -0.15 -2.63 7.13 71.98 0.51 -2.12 16 4 C -0.13 -2.02 8.29 71.98 0.60 -1.43 16 5 C -0.08 -2.20 4.76 -19.87 -0.09 -2.29 16 6 C -0.11 -2.68 8.71 22.27 0.19 -2.48 16 7 C -0.12 -3.50 9.70 22.27 0.22 -3.29 16 8 C -0.07 -2.62 5.14 -19.87 -0.10 -2.72 16 9 C -0.43 -17.72 6.01 71.24 0.43 -17.29 16 10 S 1.37 70.29 12.96 -56.49 -0.73 69.55 16 11 O -0.97 -63.55 17.82 -148.98 -2.65 -66.20 16 12 C -0.86 -48.27 9.39 67.73 0.64 -47.64 16 13 H 0.08 4.35 7.81 -2.91 -0.02 4.32 16 14 C 0.07 3.66 5.46 84.65 0.46 4.13 16 15 N -0.89 -51.97 13.15 21.45 0.28 -51.69 16 16 Si 0.97 42.45 29.54 68.60 2.03 44.48 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 19 H -0.24 -9.52 7.11 99.48 0.71 -8.82 16 20 C -0.15 -5.78 9.70 22.27 0.22 -5.56 16 21 C -0.12 -3.93 8.98 22.27 0.20 -3.73 16 22 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 23 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 24 H 0.07 1.01 7.39 -2.39 -0.02 0.99 16 25 H 0.05 1.01 7.51 -2.38 -0.02 1.00 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 0.99 7.51 -2.39 -0.02 0.97 16 28 H 0.06 0.90 7.39 -2.39 -0.02 0.88 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.15 2.68 7.10 -2.91 -0.02 2.66 16 32 H 0.16 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.14 4.68 8.09 -2.39 -0.02 4.66 16 34 H 0.05 2.43 8.09 -2.39 -0.02 2.41 16 35 H 0.29 15.38 8.31 -92.71 -0.77 14.60 16 36 H 0.09 3.76 8.06 -2.91 -0.02 3.73 16 37 H 0.13 3.67 5.89 -2.91 -0.02 3.65 16 Total: -1.00 -77.37 319.12 3.77 -73.59 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 1.04 Total: 16.98 kcal Atomic # 6 Polarization: -90.52 SS G_CDS: 3.82 Total: -86.71 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: 0.28 Total: -51.69 kcal Atomic # 8 Polarization: -63.55 SS G_CDS: -2.65 Total: -66.20 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Atomic # 16 Polarization: 70.29 SS G_CDS: -0.73 Total: 69.55 kcal Total: -77.37 3.77 -73.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526857915.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.379 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds