Wall clock time and date at job start Mon Mar 30 2020 06:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.82732 * 2 1 4 4 H 1.08001 * 119.99679 * 239.11868 * 3 2 1 5 5 C 1.37876 * 120.00069 * 59.10810 * 3 2 1 6 6 N 1.31521 * 119.99700 * 0.02562 * 5 3 2 7 7 Si 1.86796 * 120.00264 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47381 * 90.00193 * 7 5 3 9 9 H 1.48502 * 109.47316 * 210.00518 * 7 5 3 10 10 H 1.48503 * 109.46887 * 330.00436 * 7 5 3 11 11 C 1.54384 * 109.82953 * 239.10799 * 2 1 3 12 12 C 1.55304 * 102.25492 * 219.12964 * 11 2 1 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 2 14 14 C 1.53002 * 110.31095 * 82.49036 * 13 12 11 15 15 C 1.53005 * 110.30859 * 204.65983 * 13 12 11 16 16 C 1.50700 * 109.46962 * 184.99858 * 15 13 12 17 17 C 1.33393 * 125.20077 * 89.99981 * 16 15 13 18 18 C 1.38427 * 114.92335 * 179.97438 * 17 16 15 19 19 C 1.33397 * 114.91572 * 0.02562 * 18 17 16 20 20 S 1.75878 * 125.20722 * 269.69269 * 16 15 13 21 21 O 1.43240 * 109.82863 * 120.98106 * 2 1 3 22 22 H 1.09001 * 109.47612 * 180.88519 * 1 2 3 23 23 H 1.09007 * 109.47334 * 300.88948 * 1 2 3 24 24 H 1.09003 * 109.47286 * 60.88578 * 1 2 3 25 25 H 0.97002 * 119.99613 * 179.97438 * 6 5 3 26 26 H 1.09006 * 110.84230 * 100.94085 * 11 2 1 27 27 H 1.08993 * 111.02705 * 337.40327 * 11 2 1 28 28 H 1.09002 * 111.12488 * 152.05572 * 12 11 2 29 29 H 1.08995 * 111.12730 * 276.17567 * 12 11 2 30 30 H 1.08999 * 109.46829 * 59.99957 * 14 13 12 31 31 H 1.09001 * 109.47326 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.46923 * 299.99789 * 14 13 12 33 33 H 1.08995 * 109.46917 * 304.99723 * 15 13 12 34 34 H 1.08997 * 109.47249 * 65.00210 * 15 13 12 35 35 H 1.08002 * 122.54245 * 359.97438 * 17 16 15 36 36 H 1.07992 * 122.54306 * 179.97438 * 18 17 16 37 37 H 1.07996 * 125.19828 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6759 1.7628 -0.8027 5 6 1.6982 2.2741 1.0246 6 7 0.9255 1.8537 2.0023 7 14 2.3312 4.0316 1.0243 8 1 1.3684 4.9044 0.3058 9 1 2.4790 4.5048 2.4242 10 1 3.6496 4.0827 0.3428 11 6 2.0537 -0.7456 -1.2463 12 6 3.2729 -1.5217 -0.6779 13 6 2.7757 -1.8451 0.7535 14 6 1.8854 -3.0893 0.7380 15 6 3.9644 -2.0530 1.6942 16 6 3.4637 -2.4859 3.0481 17 6 3.2713 -3.7498 3.4287 18 6 2.8050 -3.9047 4.7229 19 6 2.6183 -2.7665 5.3930 20 16 3.0510 -1.4023 4.3706 21 8 2.0158 -0.6936 1.1552 22 1 -0.3634 -1.0275 0.0159 23 1 -0.3634 0.5276 0.8819 24 1 -0.3634 0.5000 -0.8978 25 1 0.6846 2.4561 2.7234 26 1 2.3671 -0.0410 -2.0166 27 1 1.3028 -1.4336 -1.6347 28 1 3.4571 -2.4340 -1.2453 29 1 4.1621 -0.8919 -0.6520 30 1 2.4541 -3.9382 0.3586 31 1 1.5440 -3.3044 1.7506 32 1 1.0241 -2.9117 0.0939 33 1 4.6202 -2.8221 1.2864 34 1 4.5173 -1.1189 1.7930 35 1 3.4646 -4.5887 2.7767 36 1 2.6067 -4.8735 5.1568 37 1 2.2611 -2.6940 6.4096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690002002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:50 Heat of formation + Delta-G solvation = -18.320503 kcal Electronic energy + Delta-G solvation = -19065.932657 eV Core-core repulsion = 16320.780228 eV Total energy + Delta-G solvation = -2745.152429 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.00659 -37.27252 -33.82614 -31.89004 -30.95161 -29.43601 -27.50260 -26.29591 -25.05921 -23.27461 -21.97685 -19.70709 -18.99915 -18.63059 -16.66432 -16.46155 -15.06009 -14.77046 -14.47937 -14.27667 -13.29497 -13.06815 -12.88049 -12.62319 -12.39212 -12.17979 -11.94567 -11.63637 -11.45415 -11.26775 -11.09492 -10.91956 -10.82430 -10.57465 -10.38756 -10.34240 -10.08678 -9.97719 -9.68639 -9.47549 -9.01925 -8.41960 -8.13025 -7.87897 -7.75336 -5.87787 -4.03934 1.51970 2.22115 2.62826 3.17803 3.32284 3.40021 3.42277 4.46733 4.86724 5.28932 5.42858 5.47697 5.50033 5.61649 5.73371 5.79271 5.94324 5.99374 6.09983 6.13922 6.21388 6.34415 6.46120 6.57363 6.59562 6.68914 6.74190 6.79040 6.87118 6.96156 6.99886 7.06209 7.20345 7.45169 7.84183 8.17568 8.45417 8.72598 9.13694 9.66566 11.13119 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.008189 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.304847 B = 3418.317101 C = 4243.215723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.231 3.769 3 C -0.531 4.531 4 H 0.056 0.944 5 C 0.083 3.917 6 N -0.855 5.855 7 Si 0.882 3.118 8 H -0.281 1.281 9 H -0.286 1.286 10 H -0.275 1.275 11 C -0.141 4.141 12 C -0.139 4.139 13 C 0.105 3.895 14 C -0.158 4.158 15 C -0.042 4.042 16 C -0.141 4.141 17 C -0.165 4.165 18 C -0.137 4.137 19 C -0.248 4.248 20 S 0.157 5.843 21 O -0.334 6.334 22 H 0.010 0.990 23 H 0.090 0.910 24 H 0.032 0.968 25 H 0.258 0.742 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.135 -9.742 1.754 10.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.193 3.807 3 C -0.569 4.569 4 H 0.074 0.926 5 C -0.122 4.122 6 N -0.491 5.491 7 Si 0.710 3.290 8 H -0.208 1.208 9 H -0.212 1.212 10 H -0.200 1.200 11 C -0.179 4.179 12 C -0.176 4.176 13 C 0.063 3.937 14 C -0.215 4.215 15 C -0.081 4.081 16 C -0.260 4.260 17 C -0.195 4.195 18 C -0.169 4.169 19 C -0.384 4.384 20 S 0.422 5.578 21 O -0.254 6.254 22 H 0.029 0.971 23 H 0.109 0.891 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.148 0.852 36 H 0.145 0.855 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.001 -8.040 2.362 9.286 hybrid contribution 0.221 -0.665 -0.349 0.783 sum 4.223 -8.705 2.012 9.882 Atomic orbital electron populations 1.22022 0.97770 0.97494 1.02500 1.19583 0.90691 0.90354 0.80060 1.21200 1.32443 0.94702 1.08553 0.92619 1.24959 0.94299 0.97725 0.95242 1.69960 1.34177 1.34735 1.10228 0.86786 0.79375 0.85646 0.77229 1.20760 1.21194 1.20027 1.23188 0.96078 0.98307 1.00315 1.23140 0.99303 0.99282 0.95907 1.21988 0.90602 0.89378 0.91724 1.22254 0.99926 0.97039 1.02286 1.20324 0.97182 1.01521 0.89111 1.24442 1.05684 0.95938 0.99915 1.19941 1.06482 0.96387 0.96730 1.19973 1.03649 0.98445 0.94799 1.25668 1.11527 0.96996 1.04177 1.84873 1.61875 1.08070 1.02943 1.88818 1.68902 1.35861 1.31796 0.97119 0.89134 0.94859 0.93199 0.91598 0.93212 0.92345 0.91090 0.93502 0.92004 0.92749 0.90333 0.90190 0.85240 0.85476 0.82874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 8.52 37.16 0.32 -3.12 16 2 C 0.23 5.65 0.82 -91.05 -0.07 5.58 16 3 C -0.53 -14.37 8.23 -34.44 -0.28 -14.65 16 4 H 0.06 1.50 7.48 -52.49 -0.39 1.10 16 5 C 0.08 2.27 5.26 -17.82 -0.09 2.18 16 6 N -0.85 -24.14 10.92 55.43 0.61 -23.53 16 7 Si 0.88 21.13 29.54 -169.99 -5.02 16.11 16 8 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 C -0.14 -2.91 5.69 -24.78 -0.14 -3.05 16 12 C -0.14 -2.53 6.05 -24.48 -0.15 -2.68 16 13 C 0.10 2.03 0.86 -89.59 -0.08 1.95 16 14 C -0.16 -2.76 8.26 37.16 0.31 -2.46 16 15 C -0.04 -0.74 5.09 -27.88 -0.14 -0.88 16 16 C -0.14 -2.46 4.81 -36.00 -0.17 -2.64 16 17 C -0.17 -2.54 8.46 -41.20 -0.35 -2.89 16 18 C -0.14 -2.00 10.18 -41.20 -0.42 -2.42 16 19 C -0.25 -3.79 11.23 29.04 0.33 -3.46 16 20 S 0.16 2.87 23.33 -107.50 -2.51 0.36 16 21 O -0.33 -8.15 9.44 -35.23 -0.33 -8.48 16 22 H 0.01 0.23 7.92 -51.93 -0.41 -0.19 16 23 H 0.09 2.46 6.01 -51.93 -0.31 2.15 16 24 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 26 H 0.07 1.35 7.60 -51.93 -0.39 0.95 16 27 H 0.05 0.95 7.55 -51.93 -0.39 0.56 16 28 H 0.06 0.90 8.03 -51.93 -0.42 0.48 16 29 H 0.07 1.31 8.05 -51.93 -0.42 0.90 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.13 6.14 -51.93 -0.32 0.81 16 32 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.15 1.96 8.06 -52.49 -0.42 1.53 16 LS Contribution 309.15 15.07 4.66 4.66 Total: -1.00 -28.84 309.15 -9.08 -37.92 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.53 Total: 1.49 kcal Atomic # 6 Polarization: -27.58 SS G_CDS: -0.95 Total: -28.53 kcal Atomic # 7 Polarization: -24.14 SS G_CDS: 0.61 Total: -23.53 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: -0.33 Total: -8.48 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -2.51 Total: 0.36 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.84 -9.08 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.601 kcal (2) G-P(sol) polarization free energy of solvation -28.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds