Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50702 * 109.82732 * 2 1 4 4 H 1.08001 * 119.99679 * 239.11868 * 3 2 1 5 5 C 1.37876 * 120.00069 * 59.10810 * 3 2 1 6 6 N 1.31521 * 119.99700 * 0.02562 * 5 3 2 7 7 Si 1.86796 * 120.00264 * 180.02562 * 5 3 2 8 8 H 1.48493 * 109.47381 * 90.00193 * 7 5 3 9 9 H 1.48502 * 109.47316 * 210.00518 * 7 5 3 10 10 H 1.48503 * 109.46887 * 330.00436 * 7 5 3 11 11 C 1.54384 * 109.82953 * 239.10799 * 2 1 3 12 12 C 1.55304 * 102.25492 * 219.12964 * 11 2 1 13 13 C 1.54944 * 100.97800 * 34.11596 * 12 11 2 14 14 C 1.53002 * 110.31095 * 82.49036 * 13 12 11 15 15 C 1.53005 * 110.30859 * 204.65983 * 13 12 11 16 16 C 1.50700 * 109.46962 * 184.99858 * 15 13 12 17 17 C 1.33393 * 125.20077 * 89.99981 * 16 15 13 18 18 C 1.38427 * 114.92335 * 179.97438 * 17 16 15 19 19 C 1.33397 * 114.91572 * 0.02562 * 18 17 16 20 20 S 1.75878 * 125.20722 * 269.69269 * 16 15 13 21 21 O 1.43240 * 109.82863 * 120.98106 * 2 1 3 22 22 H 1.09001 * 109.47612 * 180.88519 * 1 2 3 23 23 H 1.09007 * 109.47334 * 300.88948 * 1 2 3 24 24 H 1.09003 * 109.47286 * 60.88578 * 1 2 3 25 25 H 0.97002 * 119.99613 * 179.97438 * 6 5 3 26 26 H 1.09006 * 110.84230 * 100.94085 * 11 2 1 27 27 H 1.08993 * 111.02705 * 337.40327 * 11 2 1 28 28 H 1.09002 * 111.12488 * 152.05572 * 12 11 2 29 29 H 1.08995 * 111.12730 * 276.17567 * 12 11 2 30 30 H 1.08999 * 109.46829 * 59.99957 * 14 13 12 31 31 H 1.09001 * 109.47326 * 179.97438 * 14 13 12 32 32 H 1.09002 * 109.46923 * 299.99789 * 14 13 12 33 33 H 1.08995 * 109.46917 * 304.99723 * 15 13 12 34 34 H 1.08997 * 109.47249 * 65.00210 * 15 13 12 35 35 H 1.08002 * 122.54245 * 359.97438 * 17 16 15 36 36 H 1.07992 * 122.54306 * 179.97438 * 18 17 16 37 37 H 1.07996 * 125.19828 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0411 1.4177 0.0000 4 1 2.6759 1.7628 -0.8027 5 6 1.6982 2.2741 1.0246 6 7 0.9255 1.8537 2.0023 7 14 2.3312 4.0316 1.0243 8 1 1.3684 4.9044 0.3058 9 1 2.4790 4.5048 2.4242 10 1 3.6496 4.0827 0.3428 11 6 2.0537 -0.7456 -1.2463 12 6 3.2729 -1.5217 -0.6779 13 6 2.7757 -1.8451 0.7535 14 6 1.8854 -3.0893 0.7380 15 6 3.9644 -2.0530 1.6942 16 6 3.4637 -2.4859 3.0481 17 6 3.2713 -3.7498 3.4287 18 6 2.8050 -3.9047 4.7229 19 6 2.6183 -2.7665 5.3930 20 16 3.0510 -1.4023 4.3706 21 8 2.0158 -0.6936 1.1552 22 1 -0.3634 -1.0275 0.0159 23 1 -0.3634 0.5276 0.8819 24 1 -0.3634 0.5000 -0.8978 25 1 0.6846 2.4561 2.7234 26 1 2.3671 -0.0410 -2.0166 27 1 1.3028 -1.4336 -1.6347 28 1 3.4571 -2.4340 -1.2453 29 1 4.1621 -0.8919 -0.6520 30 1 2.4541 -3.9382 0.3586 31 1 1.5440 -3.3044 1.7506 32 1 1.0241 -2.9117 0.0939 33 1 4.6202 -2.8221 1.2864 34 1 4.5173 -1.1189 1.7930 35 1 3.4646 -4.5887 2.7767 36 1 2.6067 -4.8735 5.1568 37 1 2.2611 -2.6940 6.4096 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690002002.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = -33.305306 kcal Electronic energy + Delta-G solvation = -19066.582447 eV Core-core repulsion = 16320.780228 eV Total energy + Delta-G solvation = -2745.802219 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.58658 -38.55278 -35.54008 -33.67011 -32.63005 -30.99689 -29.04418 -27.62477 -27.10503 -24.69662 -23.40364 -21.43897 -20.54016 -19.87507 -18.57989 -17.77086 -16.67965 -16.33839 -16.06652 -15.92881 -14.89913 -14.66723 -14.38614 -14.24377 -13.74925 -13.50598 -13.36504 -13.19678 -13.01206 -12.84382 -12.80301 -12.68142 -12.50185 -12.22688 -12.07297 -11.96828 -11.88583 -11.38160 -11.20980 -11.15444 -10.80791 -10.49128 -9.66985 -9.28347 -9.23291 -7.94168 -6.16133 0.28512 0.94485 1.39104 1.39534 1.41880 1.49701 2.00795 2.45987 3.15992 3.56426 3.98267 4.01800 4.25598 4.27727 4.34369 4.38831 4.62375 4.72712 4.74984 4.81949 4.86718 4.93306 4.97900 5.00378 5.12680 5.15136 5.20777 5.29702 5.37324 5.43530 5.51390 5.57047 5.64831 5.75248 5.81687 6.18173 6.44381 6.77491 7.29637 7.59359 9.04585 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019436 B = 0.008189 C = 0.006597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.304847 B = 3418.317101 C = 4243.215723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.219 3.781 3 C -0.547 4.547 4 H 0.049 0.951 5 C 0.038 3.962 6 N -0.879 5.879 7 Si 0.936 3.064 8 H -0.275 1.275 9 H -0.288 1.288 10 H -0.272 1.272 11 C -0.138 4.138 12 C -0.130 4.130 13 C 0.092 3.908 14 C -0.148 4.148 15 C -0.038 4.038 16 C -0.155 4.155 17 C -0.151 4.151 18 C -0.135 4.135 19 C -0.237 4.237 20 S 0.059 5.941 21 O -0.364 6.364 22 H 0.023 0.977 23 H 0.057 0.943 24 H 0.034 0.966 25 H 0.254 0.746 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.054 0.946 35 H 0.160 0.840 36 H 0.164 0.836 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.927 -12.315 1.169 13.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.181 3.819 3 C -0.585 4.585 4 H 0.067 0.933 5 C -0.164 4.164 6 N -0.516 5.516 7 Si 0.763 3.237 8 H -0.201 1.201 9 H -0.214 1.214 10 H -0.197 1.197 11 C -0.176 4.176 12 C -0.167 4.167 13 C 0.052 3.948 14 C -0.206 4.206 15 C -0.077 4.077 16 C -0.273 4.273 17 C -0.181 4.181 18 C -0.166 4.166 19 C -0.372 4.372 20 S 0.323 5.677 21 O -0.284 6.284 22 H 0.042 0.958 23 H 0.076 0.924 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.073 0.927 35 H 0.177 0.823 36 H 0.181 0.819 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 4.799 -10.620 1.764 11.787 hybrid contribution -0.031 0.036 -0.143 0.151 sum 4.769 -10.584 1.621 11.721 Atomic orbital electron populations 1.21912 0.98491 0.97736 1.00949 1.19590 0.90333 0.89947 0.82042 1.21560 1.32056 0.96669 1.08174 0.93288 1.25599 0.94676 1.01004 0.95159 1.70107 1.35309 1.35573 1.10649 0.85926 0.78970 0.81882 0.76958 1.20114 1.21408 1.19686 1.23093 0.97467 0.98468 0.98540 1.23121 0.97744 1.00406 0.95454 1.22336 0.91172 0.88644 0.92694 1.22158 0.99588 0.97233 1.01585 1.20299 0.96660 1.01538 0.89191 1.24437 1.07468 0.96028 0.99370 1.20327 1.04298 0.96185 0.97302 1.20407 1.02196 0.99576 0.94400 1.25889 1.11183 0.95420 1.04709 1.85212 1.64305 1.11933 1.06259 1.88759 1.69757 1.37838 1.32083 0.95784 0.92378 0.94652 0.93672 0.92001 0.91643 0.88482 0.91909 0.89795 0.93138 0.93832 0.86711 0.92711 0.82277 0.81862 0.80655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.62 8.52 71.98 0.61 -6.00 16 2 C 0.22 10.78 0.82 -11.07 -0.01 10.78 16 3 C -0.55 -30.13 8.23 25.60 0.21 -29.92 16 4 H 0.05 2.68 7.48 -2.91 -0.02 2.66 16 5 C 0.04 2.14 5.26 84.65 0.45 2.59 16 6 N -0.88 -51.46 10.92 21.45 0.23 -51.22 16 7 Si 0.94 44.42 29.54 68.60 2.03 46.44 16 8 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 9 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 11 C -0.14 -5.49 5.69 31.86 0.18 -5.31 16 12 C -0.13 -4.42 6.05 32.05 0.19 -4.23 16 13 C 0.09 3.42 0.86 -10.13 -0.01 3.41 16 14 C -0.15 -4.75 8.26 71.98 0.59 -4.15 16 15 C -0.04 -1.26 5.09 29.85 0.15 -1.11 16 16 C -0.16 -5.21 4.81 24.59 0.12 -5.09 16 17 C -0.15 -4.13 8.46 21.22 0.18 -3.96 16 18 C -0.14 -3.47 10.18 21.22 0.22 -3.26 16 19 C -0.24 -6.86 11.23 66.72 0.75 -6.11 16 20 S 0.06 2.19 23.33 -56.49 -1.32 0.87 16 21 O -0.36 -17.91 9.44 -148.98 -1.41 -19.32 16 22 H 0.02 1.07 7.92 -2.39 -0.02 1.05 16 23 H 0.06 3.26 6.01 -2.38 -0.01 3.25 16 24 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 26 H 0.06 2.47 7.60 -2.38 -0.02 2.45 16 27 H 0.06 2.36 7.55 -2.39 -0.02 2.34 16 28 H 0.10 2.56 8.03 -2.39 -0.02 2.54 16 29 H 0.06 2.23 8.05 -2.39 -0.02 2.21 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.72 6.14 -2.39 -0.01 1.70 16 32 H 0.04 1.47 7.32 -2.39 -0.02 1.45 16 33 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 34 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 36 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 37 H 0.18 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -64.26 309.15 4.21 -60.05 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 1.04 Total: 15.54 kcal Atomic # 6 Polarization: -56.00 SS G_CDS: 3.64 Total: -52.37 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.23 Total: -51.22 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -1.41 Total: -19.32 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.32 Total: 0.87 kcal Total: -64.26 4.21 -60.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002002.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.743 kcal (2) G-P(sol) polarization free energy of solvation -64.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds