Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.89617 * 2 1 4 4 H 1.07997 * 120.00263 * 120.52693 * 3 2 1 5 5 C 1.37875 * 119.99759 * 300.52442 * 3 2 1 6 6 N 1.31514 * 119.99819 * 179.97438 * 5 3 2 7 7 Si 1.86806 * 120.00124 * 359.97438 * 5 3 2 8 8 H 1.48498 * 109.46915 * 90.00136 * 7 5 3 9 9 H 1.48503 * 109.47138 * 209.99843 * 7 5 3 10 10 H 1.48496 * 109.47331 * 329.99813 * 7 5 3 11 11 C 1.54377 * 109.83754 * 120.93611 * 2 1 3 12 12 C 1.55300 * 102.25502 * 140.86713 * 11 2 1 13 13 C 1.54940 * 100.94415 * 325.86750 * 12 11 2 14 14 C 1.52999 * 110.31129 * 277.53131 * 13 12 11 15 15 C 1.53001 * 110.31180 * 155.36050 * 13 12 11 16 16 C 1.50697 * 109.47279 * 182.83943 * 15 13 12 17 17 C 1.33382 * 125.21090 * 89.99767 * 16 15 13 18 18 C 1.38420 * 114.92475 * 179.97438 * 17 16 15 19 19 C 1.33384 * 114.92019 * 359.97438 * 18 17 16 20 20 S 1.75888 * 125.19558 * 269.69194 * 16 15 13 21 21 O 1.43245 * 109.82895 * 239.06890 * 2 1 3 22 22 H 1.09007 * 109.47158 * 179.48464 * 1 2 3 23 23 H 1.09004 * 109.46822 * 299.47144 * 1 2 3 24 24 H 1.08993 * 109.47690 * 59.47811 * 1 2 3 25 25 H 0.97008 * 120.00040 * 180.02562 * 6 5 3 26 26 H 1.09006 * 110.84785 * 259.06444 * 11 2 1 27 27 H 1.09007 * 110.84761 * 22.67386 * 11 2 1 28 28 H 1.09007 * 111.12449 * 83.79023 * 12 11 2 29 29 H 1.09006 * 111.12576 * 207.94720 * 12 11 2 30 30 H 1.08996 * 109.47173 * 177.16490 * 14 13 12 31 31 H 1.09005 * 109.46663 * 297.16570 * 14 13 12 32 32 H 1.08994 * 109.47072 * 57.16254 * 14 13 12 33 33 H 1.09005 * 109.46631 * 302.83254 * 15 13 12 34 34 H 1.09000 * 109.47077 * 62.83028 * 15 13 12 35 35 H 1.08005 * 122.53745 * 359.97438 * 17 16 15 36 36 H 1.08006 * 122.53942 * 179.97438 * 18 17 16 37 37 H 1.08005 * 125.20591 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0428 1.4171 0.0000 4 1 2.6733 1.7632 0.8056 5 6 1.7072 2.2717 -1.0286 6 7 2.1543 3.5085 -1.0283 7 14 0.6172 1.6728 -2.4225 8 1 -0.8059 1.9241 -2.0810 9 1 0.9632 2.4014 -3.6694 10 1 0.8280 0.2169 -2.6253 11 6 2.0538 -0.7465 1.2456 12 6 3.2730 -1.5221 0.6765 13 6 2.7747 -1.8444 -0.7547 14 6 1.8838 -3.0882 -0.7394 15 6 3.9625 -2.0522 -1.6965 16 6 3.4578 -2.2951 -3.0955 17 6 3.2313 -1.3478 -4.0067 18 6 2.7687 -1.8104 -5.2265 19 6 2.6201 -3.1335 -5.3062 20 16 3.0847 -3.8722 -3.7790 21 8 2.0159 -0.6926 -1.1559 22 1 -0.3634 -1.0277 -0.0092 23 1 -0.3633 0.5056 0.8947 24 1 -0.3634 0.5219 -0.8852 25 1 1.9178 4.1099 -1.7518 26 1 2.3673 -0.0425 2.0165 27 1 1.3013 -1.4349 1.6303 28 1 4.1621 -0.8920 0.6504 29 1 3.4573 -2.4349 1.2432 30 1 1.5007 -3.2730 -1.7429 31 1 2.4663 -3.9482 -0.4087 32 1 1.0501 -2.9295 -0.0556 33 1 4.5933 -1.1632 -1.6871 34 1 4.5428 -2.9131 -1.3648 35 1 3.3962 -0.2991 -3.8078 36 1 2.5450 -1.1500 -6.0514 37 1 2.2716 -3.6697 -6.1765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690002009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -10.274625 kcal Electronic energy + Delta-G solvation = -19278.142127 eV Core-core repulsion = 16533.338594 eV Total energy + Delta-G solvation = -2744.803533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.29905 -37.39280 -34.03707 -32.06298 -31.26873 -30.01916 -28.05386 -26.25834 -25.00391 -23.60737 -22.20114 -19.88318 -19.28789 -18.69180 -16.88073 -16.66135 -15.25574 -15.14461 -14.81820 -14.11400 -13.65159 -13.28488 -13.09553 -12.62694 -12.58070 -12.49789 -12.14654 -11.99882 -11.83468 -11.65676 -11.50162 -11.11153 -11.03915 -10.87028 -10.51886 -10.27267 -10.13444 -9.91357 -9.88241 -9.64420 -8.87016 -8.50247 -8.30443 -8.12136 -8.06203 -6.05771 -4.12698 1.33022 1.93097 2.27574 3.14249 3.40092 3.49768 3.75716 4.57151 4.66083 5.11163 5.28558 5.30272 5.38011 5.52823 5.55175 5.68067 5.76891 5.91500 5.96241 5.97872 6.00670 6.20574 6.28102 6.30135 6.45284 6.51529 6.51957 6.57176 6.62263 6.73656 6.77720 6.84898 6.85712 6.93751 7.29595 7.75796 8.37348 8.53743 8.95309 9.60694 11.05025 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.009185 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.639988 B = 3047.771830 C = 3831.594973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.192 3.808 3 C -0.518 4.518 4 H 0.075 0.925 5 C 0.085 3.915 6 N -0.896 5.896 7 Si 0.874 3.126 8 H -0.292 1.292 9 H -0.304 1.304 10 H -0.216 1.216 11 C -0.129 4.129 12 C -0.137 4.137 13 C 0.105 3.895 14 C -0.163 4.163 15 C -0.041 4.041 16 C -0.139 4.139 17 C -0.131 4.131 18 C -0.125 4.125 19 C -0.229 4.229 20 S 0.063 5.937 21 O -0.354 6.354 22 H 0.032 0.968 23 H 0.058 0.942 24 H 0.045 0.955 25 H 0.263 0.737 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.057 0.943 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.134 0.866 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.717 -14.349 -3.375 14.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 C -0.555 4.555 4 H 0.093 0.907 5 C -0.118 4.118 6 N -0.534 5.534 7 Si 0.704 3.296 8 H -0.220 1.220 9 H -0.233 1.233 10 H -0.139 1.139 11 C -0.167 4.167 12 C -0.175 4.175 13 C 0.064 3.936 14 C -0.221 4.221 15 C -0.081 4.081 16 C -0.256 4.256 17 C -0.160 4.160 18 C -0.156 4.156 19 C -0.364 4.364 20 S 0.325 5.675 21 O -0.274 6.274 22 H 0.051 0.949 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.071 0.929 28 H 0.095 0.905 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.160 0.840 36 H 0.152 0.848 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.741 -15.614 -3.156 16.024 hybrid contribution -0.788 1.384 -1.177 1.980 sum 0.953 -14.230 -4.333 14.906 Atomic orbital electron populations 1.22336 0.98174 0.98857 1.01196 1.20033 0.90054 0.92331 0.82106 1.21096 1.32772 0.92205 1.09467 0.90719 1.24985 0.95070 0.94223 0.97562 1.69933 1.44895 1.05612 1.32952 0.87123 0.79249 0.82394 0.80843 1.21968 1.23278 1.13914 1.22991 0.96118 0.98181 0.99373 1.23143 0.99466 0.99530 0.95347 1.22018 0.90556 0.88724 0.92255 1.22306 1.00200 0.97112 1.02461 1.20358 0.97125 1.02374 0.88227 1.24318 1.07002 0.94338 0.99939 1.20195 1.02220 1.01067 0.92509 1.20208 1.01859 0.94772 0.98738 1.25412 1.11696 0.98049 1.01215 1.83971 1.66290 1.10531 1.06723 1.88875 1.69311 1.37154 1.32068 0.94909 0.92331 0.93637 0.92754 0.90791 0.92866 0.90541 0.91925 0.91981 0.92976 0.92425 0.89091 0.90737 0.83992 0.84798 0.82573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 8.24 37.16 0.31 -2.96 16 2 C 0.19 4.41 0.78 -91.05 -0.07 4.34 16 3 C -0.52 -14.31 8.84 -34.44 -0.30 -14.61 16 4 H 0.07 2.22 7.72 -52.49 -0.41 1.82 16 5 C 0.09 2.46 5.45 -17.82 -0.10 2.36 16 6 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 7 Si 0.87 22.48 23.92 -169.99 -4.07 18.41 16 8 H -0.29 -7.47 6.87 56.52 0.39 -7.08 16 9 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 10 H -0.22 -5.40 5.36 56.52 0.30 -5.10 16 11 C -0.13 -2.47 5.69 -24.79 -0.14 -2.61 16 12 C -0.14 -2.33 6.05 -24.49 -0.15 -2.48 16 13 C 0.11 1.88 0.84 -89.60 -0.08 1.81 16 14 C -0.16 -2.59 8.45 37.16 0.31 -2.28 16 15 C -0.04 -0.67 5.04 -27.88 -0.14 -0.81 16 16 C -0.14 -2.31 4.70 -36.01 -0.17 -2.48 16 17 C -0.13 -2.31 9.93 -41.21 -0.41 -2.72 16 18 C -0.12 -1.92 10.18 -41.21 -0.42 -2.34 16 19 C -0.23 -3.15 11.23 29.04 0.33 -2.82 16 20 S 0.06 0.88 21.96 -107.50 -2.36 -1.48 16 21 O -0.35 -7.90 6.64 -35.23 -0.23 -8.14 16 22 H 0.03 0.63 8.03 -51.92 -0.42 0.21 16 23 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.05 1.07 3.24 -51.93 -0.17 0.90 16 25 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 26 H 0.07 1.45 7.60 -51.93 -0.39 1.05 16 27 H 0.05 0.91 7.48 -51.93 -0.39 0.53 16 28 H 0.08 1.35 8.06 -51.93 -0.42 0.93 16 29 H 0.06 0.89 8.03 -51.93 -0.42 0.47 16 30 H 0.06 1.03 6.26 -51.93 -0.33 0.70 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.92 7.34 -51.93 -0.38 0.54 16 33 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.14 2.72 8.06 -52.48 -0.42 2.30 16 36 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 37 H 0.16 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 300.06 15.07 4.52 4.52 Total: -1.00 -30.58 300.06 -7.92 -38.49 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.52 Total: 2.49 kcal Atomic # 6 Polarization: -26.57 SS G_CDS: -1.03 Total: -27.60 kcal Atomic # 7 Polarization: -27.47 SS G_CDS: 0.77 Total: -26.70 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.23 Total: -8.14 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.07 Total: 18.41 kcal Atomic # 16 Polarization: 0.88 SS G_CDS: -2.36 Total: -1.48 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.58 -7.92 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.217 kcal (2) G-P(sol) polarization free energy of solvation -30.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds