Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.89617 * 2 1 4 4 H 1.07997 * 120.00263 * 120.52693 * 3 2 1 5 5 C 1.37875 * 119.99759 * 300.52442 * 3 2 1 6 6 N 1.31514 * 119.99819 * 179.97438 * 5 3 2 7 7 Si 1.86806 * 120.00124 * 359.97438 * 5 3 2 8 8 H 1.48498 * 109.46915 * 90.00136 * 7 5 3 9 9 H 1.48503 * 109.47138 * 209.99843 * 7 5 3 10 10 H 1.48496 * 109.47331 * 329.99813 * 7 5 3 11 11 C 1.54377 * 109.83754 * 120.93611 * 2 1 3 12 12 C 1.55300 * 102.25502 * 140.86713 * 11 2 1 13 13 C 1.54940 * 100.94415 * 325.86750 * 12 11 2 14 14 C 1.52999 * 110.31129 * 277.53131 * 13 12 11 15 15 C 1.53001 * 110.31180 * 155.36050 * 13 12 11 16 16 C 1.50697 * 109.47279 * 182.83943 * 15 13 12 17 17 C 1.33382 * 125.21090 * 89.99767 * 16 15 13 18 18 C 1.38420 * 114.92475 * 179.97438 * 17 16 15 19 19 C 1.33384 * 114.92019 * 359.97438 * 18 17 16 20 20 S 1.75888 * 125.19558 * 269.69194 * 16 15 13 21 21 O 1.43245 * 109.82895 * 239.06890 * 2 1 3 22 22 H 1.09007 * 109.47158 * 179.48464 * 1 2 3 23 23 H 1.09004 * 109.46822 * 299.47144 * 1 2 3 24 24 H 1.08993 * 109.47690 * 59.47811 * 1 2 3 25 25 H 0.97008 * 120.00040 * 180.02562 * 6 5 3 26 26 H 1.09006 * 110.84785 * 259.06444 * 11 2 1 27 27 H 1.09007 * 110.84761 * 22.67386 * 11 2 1 28 28 H 1.09007 * 111.12449 * 83.79023 * 12 11 2 29 29 H 1.09006 * 111.12576 * 207.94720 * 12 11 2 30 30 H 1.08996 * 109.47173 * 177.16490 * 14 13 12 31 31 H 1.09005 * 109.46663 * 297.16570 * 14 13 12 32 32 H 1.08994 * 109.47072 * 57.16254 * 14 13 12 33 33 H 1.09005 * 109.46631 * 302.83254 * 15 13 12 34 34 H 1.09000 * 109.47077 * 62.83028 * 15 13 12 35 35 H 1.08005 * 122.53745 * 359.97438 * 17 16 15 36 36 H 1.08006 * 122.53942 * 179.97438 * 18 17 16 37 37 H 1.08005 * 125.20591 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0428 1.4171 0.0000 4 1 2.6733 1.7632 0.8056 5 6 1.7072 2.2717 -1.0286 6 7 2.1543 3.5085 -1.0283 7 14 0.6172 1.6728 -2.4225 8 1 -0.8059 1.9241 -2.0810 9 1 0.9632 2.4014 -3.6694 10 1 0.8280 0.2169 -2.6253 11 6 2.0538 -0.7465 1.2456 12 6 3.2730 -1.5221 0.6765 13 6 2.7747 -1.8444 -0.7547 14 6 1.8838 -3.0882 -0.7394 15 6 3.9625 -2.0522 -1.6965 16 6 3.4578 -2.2951 -3.0955 17 6 3.2313 -1.3478 -4.0067 18 6 2.7687 -1.8104 -5.2265 19 6 2.6201 -3.1335 -5.3062 20 16 3.0847 -3.8722 -3.7790 21 8 2.0159 -0.6926 -1.1559 22 1 -0.3634 -1.0277 -0.0092 23 1 -0.3633 0.5056 0.8947 24 1 -0.3634 0.5219 -0.8852 25 1 1.9178 4.1099 -1.7518 26 1 2.3673 -0.0425 2.0165 27 1 1.3013 -1.4349 1.6303 28 1 4.1621 -0.8920 0.6504 29 1 3.4573 -2.4349 1.2432 30 1 1.5007 -3.2730 -1.7429 31 1 2.4663 -3.9482 -0.4087 32 1 1.0501 -2.9295 -0.0556 33 1 4.5933 -1.1632 -1.6871 34 1 4.5428 -2.9131 -1.3648 35 1 3.3962 -0.2991 -3.8078 36 1 2.5450 -1.1500 -6.0514 37 1 2.2716 -3.6697 -6.1765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690002009.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -28.261229 kcal Electronic energy + Delta-G solvation = -19278.922085 eV Core-core repulsion = 16533.338594 eV Total energy + Delta-G solvation = -2745.583491 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 266.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.83346 -38.63083 -35.68039 -34.00324 -32.88842 -31.49538 -29.43653 -27.52930 -27.03945 -24.98865 -23.52620 -21.46647 -20.89976 -19.92870 -18.83535 -17.85195 -17.08125 -16.43180 -16.27423 -15.80135 -15.22602 -14.86695 -14.60652 -14.33097 -14.17872 -13.84338 -13.71486 -13.32201 -13.17292 -13.00183 -12.92786 -12.78517 -12.55814 -12.33948 -12.08344 -11.87464 -11.76383 -11.64717 -11.38331 -11.26412 -10.72967 -10.66972 -9.93401 -9.39962 -9.22506 -8.31168 -6.39064 0.15977 0.79674 1.12057 1.30763 1.39219 1.68513 1.91121 2.41833 2.97011 3.37317 3.85009 3.91192 4.15940 4.19651 4.27439 4.33845 4.47922 4.53976 4.60655 4.71970 4.75769 4.78056 4.82887 4.90502 4.96403 5.01810 5.06627 5.22423 5.23332 5.30180 5.37779 5.50799 5.55581 5.58148 5.67259 5.74463 6.25845 6.62667 6.89946 7.38845 8.83549 Molecular weight = 266.11amu Principal moments of inertia in cm(-1) A = 0.019901 B = 0.009185 C = 0.007306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.639988 B = 3047.771830 C = 3831.594973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.187 3.813 3 C -0.514 4.514 4 H 0.037 0.963 5 C 0.032 3.968 6 N -0.946 5.946 7 Si 0.934 3.066 8 H -0.288 1.288 9 H -0.316 1.316 10 H -0.204 1.204 11 C -0.127 4.127 12 C -0.130 4.130 13 C 0.095 3.905 14 C -0.157 4.157 15 C -0.041 4.041 16 C -0.160 4.160 17 C -0.157 4.157 18 C -0.148 4.148 19 C -0.218 4.218 20 S 0.115 5.885 21 O -0.377 6.377 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.026 0.974 25 H 0.262 0.738 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.145 0.855 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.960 -18.448 -3.659 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.149 3.851 3 C -0.552 4.552 4 H 0.055 0.945 5 C -0.166 4.166 6 N -0.587 5.587 7 Si 0.763 3.237 8 H -0.216 1.216 9 H -0.246 1.246 10 H -0.127 1.127 11 C -0.165 4.165 12 C -0.168 4.168 13 C 0.055 3.945 14 C -0.214 4.214 15 C -0.080 4.080 16 C -0.277 4.277 17 C -0.186 4.186 18 C -0.179 4.179 19 C -0.353 4.353 20 S 0.378 5.622 21 O -0.297 6.297 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.162 0.838 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 0.985 -19.742 -3.426 20.061 hybrid contribution -0.463 2.595 -1.039 2.834 sum 0.522 -17.146 -4.465 17.726 Atomic orbital electron populations 1.22298 0.97214 1.00609 1.00453 1.19940 0.90758 0.90142 0.84239 1.21478 1.30958 0.95185 1.07571 0.94459 1.25712 0.96635 0.94263 1.00002 1.70066 1.47419 1.07058 1.34107 0.86195 0.77599 0.82267 0.77624 1.21566 1.24575 1.12661 1.22946 0.97757 0.98356 0.97411 1.23140 0.97773 1.00635 0.95239 1.22359 0.91101 0.88213 0.92842 1.22246 1.00145 0.96766 1.02290 1.20358 0.96577 1.02814 0.88265 1.24450 1.07177 0.96149 0.99931 1.20196 1.04083 1.00002 0.94346 1.20296 1.03167 0.95986 0.98410 1.25853 1.09692 0.97533 1.02269 1.83710 1.65023 1.07621 1.05876 1.88773 1.70096 1.39029 1.31838 0.91754 0.91960 0.95517 0.92961 0.92168 0.89899 0.92198 0.87863 0.92673 0.89762 0.92275 0.91367 0.87492 0.87233 0.83760 0.79322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.27 8.24 71.98 0.59 -5.67 16 2 C 0.19 8.46 0.78 -11.07 -0.01 8.45 16 3 C -0.51 -29.32 8.84 25.60 0.23 -29.09 16 4 H 0.04 2.34 7.72 -2.91 -0.02 2.31 16 5 C 0.03 1.92 5.45 84.65 0.46 2.38 16 6 N -0.95 -60.80 13.96 21.45 0.30 -60.50 16 7 Si 0.93 48.18 23.92 68.60 1.64 49.82 16 8 H -0.29 -14.47 6.87 99.48 0.68 -13.78 16 9 H -0.32 -16.69 7.11 99.48 0.71 -15.99 16 10 H -0.20 -10.04 5.36 99.48 0.53 -9.51 16 11 C -0.13 -4.63 5.69 31.85 0.18 -4.45 16 12 C -0.13 -4.11 6.05 32.05 0.19 -3.91 16 13 C 0.09 3.15 0.84 -10.13 -0.01 3.14 16 14 C -0.16 -4.28 8.45 71.98 0.61 -3.67 16 15 C -0.04 -1.25 5.04 29.85 0.15 -1.10 16 16 C -0.16 -5.04 4.70 24.59 0.12 -4.92 16 17 C -0.16 -5.51 9.93 21.21 0.21 -5.30 16 18 C -0.15 -4.35 10.18 21.21 0.22 -4.14 16 19 C -0.22 -5.29 11.23 66.72 0.75 -4.54 16 20 S 0.12 2.80 21.96 -56.49 -1.24 1.56 16 21 O -0.38 -16.44 6.64 -148.98 -0.99 -17.43 16 22 H 0.06 2.28 8.03 -2.38 -0.02 2.26 16 23 H 0.06 2.52 8.14 -2.38 -0.02 2.50 16 24 H 0.03 1.21 3.24 -2.39 -0.01 1.20 16 25 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 26 H 0.06 2.33 7.60 -2.38 -0.02 2.31 16 27 H 0.08 2.53 7.48 -2.38 -0.02 2.51 16 28 H 0.06 2.07 8.06 -2.38 -0.02 2.05 16 29 H 0.10 2.43 8.03 -2.38 -0.02 2.41 16 30 H 0.05 1.59 6.26 -2.39 -0.01 1.57 16 31 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.06 1.60 7.34 -2.39 -0.02 1.58 16 33 H 0.07 2.36 8.14 -2.38 -0.02 2.34 16 34 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.19 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -68.96 300.06 4.25 -64.71 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.85 Total: 14.65 kcal Atomic # 6 Polarization: -56.51 SS G_CDS: 3.69 Total: -52.82 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 0.30 Total: -60.50 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.99 Total: -17.43 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 1.64 Total: 49.82 kcal Atomic # 16 Polarization: 2.80 SS G_CDS: -1.24 Total: 1.56 kcal Total: -68.96 4.25 -64.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690002009.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.452 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds